Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1129.14 Capsicum annuum HOM05D003094 ORTHO05D003482 1.1e-51 206.5 111 100.0
PGSC0003DMG401005733 Solanum tuberosum HOM05D003094 ORTHO05D003482 6.9e-30 134.0 112 71.4
Nitab4.5_0001986g0080 Nicotiana tabacum HOM05D003094 ORTHO05D003482 7.6e-29 130.6 103 72.8
Solyc03g119160.3 Solanum lycopersicum HOM05D003094 ORTHO05D003482 7.6e-29 130.6 104 74.0
Sopen03g038050 Solanum pennellii HOM05D003094 ORTHO05D003482 1.6e-26 122.9 104 72.1
Peaxi162Scf00683g00019 Petunia axillaris HOM05D003094 ORTHO05D003482 4.6e-26 121.3 103 68.9
Nitab4.5_0008678g0040 Nicotiana tabacum HOM05D003094 ORTHO05D003482 5.5e-19 97.8 113 54.0
Nitab4.5_0004028g0060 Nicotiana tabacum HOM05D003094 ORTHO05D003482 1.0e-17 93.6 137 48.2
Gohir.A13G146300 Gossypium hirsutum HOM05D003094 ORTHO05D003482 3.8e-12 75.1 67 56.7
Gohir.D13G151300 Gossypium hirsutum HOM05D003094 ORTHO05D003482 3.8e-12 75.1 67 56.7
Gohir.D13G152004 Gossypium hirsutum HOM05D003094 ORTHO05D003482 3.8e-12 75.1 67 56.7
Atru.chr9.906 Acer truncatum HOM05D003094 ORTHO05D003482 5.0e-12 74.7 111 43.2
Gohir.D07G064100 Gossypium hirsutum HOM05D003094 ORTHO05D003482 8.5e-12 73.9 78 55.1
Dinv17506 Davidia involucrata HOM05D003094 ORTHO05D003482 1.1e-11 73.6 113 45.1
Gohir.A13G146900 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.1e-11 73.6 68 55.9
Gorai.013G170500 Gossypium raimondii HOM05D003094 ORTHO05D003482 1.1e-11 73.6 68 55.9
TWI81G0976 Tripterygium wilfordii HOM05D003094 ORTHO05D003482 1.1e-11 73.6 93 48.4
Cc04_g06850 Coffea canephora HOM05D003094 ORTHO05D003482 1.4e-11 73.2 113 43.4
Gohir.A07G059300 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.9e-11 72.8 78 53.8
Gorai.001G067600 Gossypium raimondii HOM05D003094 ORTHO05D003482 1.9e-11 72.8 78 53.8
Gorai.003G056600 Gossypium raimondii HOM05D003094 ORTHO05D003482 1.9e-11 72.8 67 56.7
MD06G1220600 Malus domestica HOM05D003094 ORTHO05D003482 2.5e-11 72.4 104 45.2
Gohir.D08G096900 Gossypium hirsutum HOM05D003094 ORTHO05D003482 3.2e-11 72.0 66 54.5
ECA233G5083 Erigeron canadensis HOM05D003094 ORTHO05D003482 4.2e-11 71.6 94 48.9
Lsat_1_v5_gn_8_141460 Lactuca sativa HOM05D003094 ORTHO05D003482 4.2e-11 71.6 81 50.6
QL10p026559 Quercus lobata HOM05D003094 ORTHO05D003482 7.2e-11 70.9 101 48.5
Sed0019035 Sechium edule HOM05D003094 ORTHO05D003482 7.2e-11 70.9 97 48.5
Duzib213G0897 Durio zibethinus HOM05D003094 ORTHO05D003482 2.1e-10 69.3 67 53.7
Dinv07353 Davidia involucrata HOM05D003094 ORTHO05D003482 2.7e-10 68.9 113 43.4
Dinv09627 Davidia involucrata HOM05D003094 ORTHO05D003482 3.6e-10 68.6 113 43.4
CiPaw.16G089100 Carya illinoinensis HOM05D003094 ORTHO05D003482 4.6e-10 68.2 113 39.8
FAN08G1507 Fragaria x ananassa HOM05D003094 ORTHO05D003482 4.6e-10 68.2 111 39.6
HanXRQChr17g0558961 Helianthus annuus HOM05D003094 ORTHO05D003482 4.6e-10 68.2 96 44.8
CANSAT80G1577 Cannabis sativa HOM05D003094 ORTHO05D003482 6.1e-10 67.8 101 45.5
Gorai.002G151500 Gossypium raimondii HOM05D003094 ORTHO05D003482 6.1e-10 67.8 51 62.7
Actinidia35101 Actinidia chinensis HOM05D003094 ORTHO05D003482 7.9e-10 67.4 81 48.1
FAN13G1164 Fragaria x ananassa HOM05D003094 ORTHO05D003482 1.0e-09 67.0 91 42.9
Gorai.012G098500 Gossypium raimondii HOM05D000575 ORTHO05D003482 1.0e-09 67.0 60 56.7
MD06G1220500 Malus domestica HOM05D003094 ORTHO05D003482 1.0e-09 67.0 118 41.5
QL10p026547 Quercus lobata HOM05D003094 ORTHO05D003482 1.0e-09 67.0 67 52.2
GSVIVG01008338001 Vitis vinifera HOM05D003094 ORTHO05D003482 1.0e-09 67.0 66 51.5
COL.COLO4_38537 Corchorus olitorius HOM05D003094 ORTHO05D003482 1.4e-09 66.6 52 59.6
Gohir.D10G153150 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.4e-09 66.6 60 56.7
Prupe.5G225000 Prunus persica HOM05D003094 ORTHO05D003482 1.4e-09 66.6 113 36.3
Duzib084G0458 Durio zibethinus HOM05D003094 ORTHO05D003482 1.8e-09 66.2 70 51.4
FAN04G1950 Fragaria x ananassa HOM05D003094 ORTHO05D003482 1.8e-09 66.2 87 44.8
Gohir.D09G047900 Gossypium hirsutum HOM05D003094 ORTHO05D003482 2.3e-09 65.9 73 50.7
Gorai.001G159100 Gossypium raimondii HOM05D003094 ORTHO05D003482 2.3e-09 65.9 60 55.0
Rhsim12G0141600 Rhododendron simsii HOM05D003094 ORTHO05D003482 2.3e-09 65.9 83 49.4
ClCG04G010900 Citrullus lanatus HOM05D003094 ORTHO05D003482 3.0e-09 65.5 91 48.4
MELO3C017325.2 Cucumis melo HOM05D003094 ORTHO05D003482 3.0e-09 65.5 89 43.8
Gohir.A02G112001 Gossypium hirsutum HOM05D003094 ORTHO05D003482 3.0e-09 65.5 61 55.7
VMungo0251G1973 Vigna mungo HOM05D003094 ORTHO05D003482 3.0e-09 65.5 66 50.0
Actinidia19943 Actinidia chinensis HOM05D003094 ORTHO05D003482 3.9e-09 65.1 68 54.4
Actinidia36579 Actinidia chinensis HOM05D003094 ORTHO05D003482 3.9e-09 65.1 68 54.4
ClCG06G014600 Citrullus lanatus HOM05D003094 ORTHO05D003482 3.9e-09 65.1 102 41.2
CsaV3_1G006930 Cucumis sativus L. HOM05D003094 ORTHO05D003482 3.9e-09 65.1 65 53.8
MD14G1229900 Malus domestica HOM05D003094 ORTHO05D003482 3.9e-09 65.1 118 41.5
Ciclev10020325m.g Citrus clementina HOM05D003094 ORTHO05D003482 6.7e-09 64.3 67 49.3
PGR044G0078 Punica granatum HOM05D003094 ORTHO05D003482 8.8e-09 63.9 112 39.3
vmacro16434 Vaccinium macrocarpon HOM05D003094 ORTHO05D003482 8.8e-09 63.9 102 44.1
Atru.chr9.905 Acer truncatum HOM05D003094 ORTHO05D003482 1.1e-08 63.5 122 36.1
Cfa019732 Carpinus fangiana HOM05D003094 ORTHO05D003482 1.1e-08 63.5 65 50.8
CSS0029576 Camellia sinensis var. sinensis HOM05D003094 ORTHO05D003482 1.5e-08 63.2 67 49.3
MELO3C002109.2 Cucumis melo HOM05D003094 ORTHO05D003482 1.5e-08 63.2 81 49.4
Phvul.002G182800 Phaseolus vulgaris HOM05D003094 ORTHO05D003482 1.5e-08 63.2 75 48.0
SHI53281 Sapria himalayana HOM05D003094 ORTHO05D003482 1.5e-08 63.2 74 48.6
EL10Ac7g16627 Beta vulgaris HOM05D003094 ORTHO05D003482 1.9e-08 62.8 67 50.7
Eucgr.K02236 Eucalyptus grandis HOM05D003094 ORTHO05D003482 1.9e-08 62.8 66 51.5
Gorai.013G169300 Gossypium raimondii HOM05D003094 ORTHO05D003482 1.9e-08 62.8 67 47.8
ATR0757G079 Amborella trichopoda HOM05D003094 ORTHO05D003482 2.5e-08 62.4 73 47.9
AUR62040348 Chenopodium quinoa HOM05D003094 ORTHO05D003482 2.5e-08 62.4 67 49.3
Thecc.07G091700 Theobroma cacao HOM05D003094 ORTHO05D003482 2.5e-08 62.4 67 46.3
Ca_11586_v3 Cicer arietinum L. HOM05D003094 ORTHO05D003482 3.3e-08 62.0 67 49.3
FvH4_5g16690 Fragaria vesca HOM05D003094 ORTHO05D003482 3.3e-08 62.0 115 37.4
Gohir.D07G182700 Gossypium hirsutum HOM05D003094 ORTHO05D003482 3.3e-08 62.0 60 53.3
EL10Ac4g10181 Beta vulgaris HOM05D003094 ORTHO05D003482 4.3e-08 61.6 67 47.8
vmacro07219 Vaccinium macrocarpon HOM05D003094 ORTHO05D003482 4.3e-08 61.6 66 50.0
Sed0020442 Sechium edule HOM05D003094 ORTHO05D003482 5.7e-08 61.2 102 38.2
Hund02353 Selenicereus undatus HOM05D003094 ORTHO05D003482 5.7e-08 61.2 80 43.8
CiPaw.16G089200 Carya illinoinensis HOM05D003094 ORTHO05D003482 7.4e-08 60.8 113 41.6
Glyma.05G139400 Glycine max HOM05D003094 ORTHO05D003482 7.4e-08 60.8 67 46.3
Haze_18734 Corylus avellana HOM05D003094 ORTHO05D003482 9.7e-08 60.5 62 51.6
Gohir.D05G318800 Gossypium hirsutum HOM05D003094 ORTHO05D003482 9.7e-08 60.5 60 53.3
RcHm_v2.0_Chr7g0179411 Rosa chinensis HOM05D003094 ORTHO05D003482 9.7e-08 60.5 107 37.4
Sc04g0003380 Simmondsia chinensis HOM05D003094 ORTHO05D003482 9.7e-08 60.5 111 37.8
Glyma.08G094700 Glycine max HOM05D003094 ORTHO05D003482 1.3e-07 60.1 103 38.8
Cpa.g.sc3.463 Carica papaya HOM05D003094 ORTHO05D003482 1.7e-07 59.7 57 57.9
CsaV3_1G004020 Cucumis sativus L. HOM05D003094 ORTHO05D003482 1.7e-07 59.7 66 48.5
Nitab4.5_0004955g0040 Nicotiana tabacum HOM05D003094 ORTHO05D003482 1.7e-07 59.7 141 37.6
THA.LOC104812151 Tarenaya hassleriana HOM05D003094 ORTHO05D003482 1.7e-07 59.7 65 53.8
TPR.G35824 Trifolium pratense HOM05D003094 ORTHO05D003482 1.7e-07 59.7 54 48.1
AUR62042498 Chenopodium quinoa HOM05D003094 ORTHO05D003482 2.2e-07 59.3 67 46.3
Haze_18735 Corylus avellana HOM05D003094 ORTHO05D003482 2.2e-07 59.3 89 44.9
FAN18G0043 Fragaria x ananassa HOM05D003094 ORTHO05D003482 2.2e-07 59.3 105 40.0
THA.LOC104820380 Tarenaya hassleriana HOM05D003094 ORTHO05D003482 2.2e-07 59.3 112 34.8
Ah.11g047710 Amaranthus hybridus HOM05D003094 ORTHO05D003482 2.8e-07 58.9 112 34.8
AT4G21460 Arabidopsis thaliana HOM05D003094 ORTHO05D003482 2.8e-07 58.9 101 35.6
EL10Ac5g11481 Beta vulgaris HOM05D003094 ORTHO05D003482 2.8e-07 58.9 91 37.4
Thhalv10020806m.g Eutrema salsugineum HOM05D003094 ORTHO05D003482 2.8e-07 58.9 111 36.9
Manes.01G015200 Manihot esculenta HOM05D003094 ORTHO05D003482 2.8e-07 58.9 95 36.8
Cfa019731 Carpinus fangiana HOM05D003094 ORTHO05D003482 3.7e-07 58.5 109 42.2
Dinv12225 Davidia involucrata HOM05D003094 ORTHO05D003482 3.7e-07 58.5 108 39.8
Glyma.09G180400 Glycine max HOM05D003094 ORTHO05D003482 3.7e-07 58.5 50 60.0
HanXRQChr06g0180771 Helianthus annuus HOM05D003094 ORTHO05D003482 3.7e-07 58.5 65 53.8
Lj9A424T34 Lonicera japonica HOM05D003094 ORTHO05D003482 3.7e-07 58.5 60 51.7
Hund11930 Selenicereus undatus HOM05D003094 ORTHO05D003482 3.7e-07 58.5 121 33.9
arahy.Tifrunner.gnm1.ann1.D1K70W Arachis hypogaea HOM05D003094 ORTHO05D003482 4.8e-07 58.2 101 36.6
Nitab4.5_0001986g0070 Nicotiana tabacum HOM05D003094 ORTHO05D003482 6.3e-07 57.8 68 50.0
Psat7g083520 Pisum sativum HOM05D003094 ORTHO05D003482 6.3e-07 57.8 93 38.7
RcHm_v2.0_Chr2g0128201 Rosa chinensis HOM05D003094 ORTHO05D003482 6.3e-07 57.8 117 36.8
TAR374G0309 Trochodendron aralioides HOM05D003094 ORTHO05D003482 6.3e-07 57.8 68 50.0
Potri.015G044100 Populus trichocarpa HOM05D003094 ORTHO05D003482 8.2e-07 57.4 117 33.3
AT3G18240 Arabidopsis thaliana HOM05D003094 ORTHO05D003482 1.1e-06 57.0 109 32.1
arahy.Tifrunner.gnm1.ann1.53L2ET Arachis hypogaea HOM05D010130 ORTHO05D010480 1.1e-06 57.0 106 38.7
arahy.Tifrunner.gnm1.ann1.J45ZPD Arachis hypogaea HOM05D003094 ORTHO05D003482 1.1e-06 57.0 108 38.9
TPR.G5116 Trifolium pratense HOM05D003094 ORTHO05D003482 1.1e-06 57.0 54 46.3
VMungo0464G0085 Vigna mungo HOM05D013688 ORTHO05D013355 1.1e-06 57.0 96 41.7
Sc10g0009380 Simmondsia chinensis HOM05D003094 ORTHO05D003482 1.4e-06 56.6 116 39.7
Manes.05G133000 Manihot esculenta HOM05D003094 ORTHO05D003482 1.8e-06 56.2 90 40.0
Rhsim10G0183200 Rhododendron simsii HOM05D003094 ORTHO05D003482 1.8e-06 56.2 111 37.8
TAR374G0733 Trochodendron aralioides HOM05D003094 ORTHO05D003482 1.8e-06 56.2 68 48.5
Ciclev10023622m.g Citrus clementina HOM05D003094 ORTHO05D003482 2.4e-06 55.8 63 46.0
Cc04_g06860 Coffea canephora HOM05D003094 ORTHO05D003482 2.4e-06 55.8 108 39.8
COL.COLO4_27184 Corchorus olitorius HOM05D003094 ORTHO05D003482 2.4e-06 55.8 68 44.1
Solyc03g119170.3 Solanum lycopersicum HOM05D003094 ORTHO05D003482 2.4e-06 55.8 68 47.1
Sopen03g038060 Solanum pennellii HOM05D003094 ORTHO05D003482 2.4e-06 55.8 68 47.1
AUR62029914 Chenopodium quinoa HOM05D003094 ORTHO05D003482 3.1e-06 55.5 60 46.7
MBI16_g44830_MAGBIO Magnolia biondii HOM05D003094 ORTHO05D003482 3.1e-06 55.5 107 36.4
arahy.Tifrunner.gnm1.ann1.2IG2A1 Arachis hypogaea HOM05D003094 ORTHO05D003482 4.1e-06 55.1 104 38.5
Aa31LG8G5090 Aethionema arabicum HOM05D003094 ORTHO05D003482 5.3e-06 54.7 104 33.7
BraA02t06932Z Brassica rapa HOM05D003094 ORTHO05D003482 5.3e-06 54.7 95 37.9
HPP92_008848 Vanilla planifolia HOM05D003094 ORTHO05D003482 5.3e-06 54.7 67 43.3
HPP92_008864 Vanilla planifolia HOM05D003094 ORTHO05D003482 5.3e-06 54.7 67 43.3
Medtr6g082590 Medicago truncatula HOM05D003094 ORTHO05D003482 6.9e-06 54.3 50 50.0
AL3G31470 Arabidopsis lyrata HOM05D003094 ORTHO05D003482 9.1e-06 53.9 88 34.1


User provided reference genes

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