Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1126.17 Capsicum annuum HOM05D007745 ORTHO05D009771 9.9e-214 746.5 374 100.0
CAN.G1126.15 Capsicum annuum HOM05D007745 ORTHO05D009771 3.1e-127 459.1 372 69.1
PGSC0003DMG400027855 Solanum tuberosum HOM05D007745 ORTHO05D009771 3.3e-108 396.0 388 61.3
Nitab4.5_0010511g0010 Nicotiana tabacum HOM05D007745 ORTHO05D009771 4.9e-96 355.5 400 55.2
Nitab4.5_0000110g0250 Nicotiana tabacum HOM05D007745 ORTHO05D009771 4.2e-95 352.4 403 54.8
Peaxi162Scf00057g00084 Petunia axillaris HOM05D007745 ORTHO05D009771 1.6e-94 350.5 389 56.0
Sopen04g033520 Solanum pennellii HOM05D007745 ORTHO05D009771 5.3e-90 335.5 406 52.5
Solyc04g079940.3 Solanum lycopersicum HOM05D007745 ORTHO05D009771 6.0e-86 322.0 407 51.8
Rhsim06G0036400 Rhododendron simsii HOM05D007745 ORTHO05D009771 1.7e-51 207.6 390 38.2
vmacro21613 Vaccinium macrocarpon HOM05D007745 ORTHO05D009771 1.1e-50 204.9 397 36.8
Hma1.2p1_0203F.1_g086690 Hydrangea macrophylla HOM05D007745 ORTHO05D009771 1.5e-49 201.1 393 36.9
Dinv36046 Davidia involucrata HOM05D007745 ORTHO05D009771 3.4e-49 199.9 377 41.1
Lj4A44T41 Lonicera japonica HOM05D007745 ORTHO05D009771 3.6e-46 189.9 389 36.5
MSTRG.24305 Avicennia marina HOM05D007745 ORTHO05D009771 1.1e-44 184.9 388 34.3
Dinv39385 Davidia involucrata HOM05D000626 ORTHO05D000824 2.8e-43 180.3 307 39.1
Oeu015593.1 Olea europaea HOM05D007745 ORTHO05D009771 1.1e-42 178.3 376 36.4
Actinidia22565 Actinidia chinensis HOM05D007745 ORTHO05D009771 2.6e-41 173.7 343 37.9
PGR031G1654 Punica granatum HOM05D007745 ORTHO05D009771 3.5e-41 173.3 381 34.1
Ciclev10001389m.g Citrus clementina HOM05D007745 ORTHO05D009771 7.7e-41 172.2 395 33.4
Prupe.1G383200 Prunus persica HOM05D007745 ORTHO05D009771 1.7e-40 171.0 370 36.5
Cc10_g03330 Coffea canephora HOM05D007745 ORTHO05D009771 2.2e-40 170.6 385 34.8
Potri.014G041300 Populus trichocarpa HOM05D007745 ORTHO05D009771 8.5e-40 168.7 385 33.0
SalBow8G3493 Salvia bowleyana HOM05D007745 ORTHO05D009771 4.2e-39 166.4 317 34.1
SalBow8G4556 Salvia bowleyana HOM05D007745 ORTHO05D009771 4.2e-39 166.4 317 34.1
Manes.05G163200 Manihot esculenta HOM05D007745 ORTHO05D009771 8.0e-38 162.2 402 32.3
HanXRQChr04g0104881 Helianthus annuus HOM05D007745 ORTHO05D009771 1.4e-37 161.4 377 31.8
DCAR_012752 Daucus carota HOM05D007745 ORTHO05D009771 3.0e-37 160.2 302 38.4
Cfa018439 Carpinus fangiana HOM05D007745 ORTHO05D009771 8.8e-37 158.7 407 31.9
Haze_17626 Corylus avellana HOM05D007745 ORTHO05D009771 3.3e-36 156.8 385 31.4
Duzib041G0319 Durio zibethinus HOM05D007745 ORTHO05D009771 9.7e-36 155.2 392 32.4
Gohir.A06G011800 Gossypium hirsutum HOM05D007745 ORTHO05D009771 1.3e-35 154.8 382 30.4
Sc02g0006490 Simmondsia chinensis HOM05D007745 ORTHO05D009771 1.3e-35 154.8 394 32.5
Gohir.D06G009200 Gossypium hirsutum HOM05D007745 ORTHO05D009771 1.7e-35 154.5 371 32.9
ECA247G2825 Erigeron canadensis HOM05D000121 ORTHO05D001726 2.8e-35 153.7 291 34.4
CSS0036766 Camellia sinensis var. sinensis HOM05D007745 ORTHO05D009771 6.3e-35 152.5 306 36.9
CANSAT25G3090 Cannabis sativa HOM05D007745 ORTHO05D009771 6.3e-35 152.5 391 31.7
GSVIVG01009651001 Vitis vinifera HOM05D007745 ORTHO05D009771 1.4e-34 151.4 365 34.2
MD15G1032200 Malus domestica HOM05D007745 ORTHO05D009771 1.8e-34 151.0 371 34.0
FAN27G0058 Fragaria x ananassa HOM05D007745 ORTHO05D009771 3.1e-34 150.2 384 33.1
HanXRQChr04g0104891 Helianthus annuus HOM05D007745 ORTHO05D009771 4.1e-34 149.8 381 31.2
FvH4_2g40240 Fragaria vesca HOM05D007745 ORTHO05D009771 5.3e-34 149.4 384 32.0
FAN15G0796 Fragaria x ananassa HOM05D007745 ORTHO05D009771 7.0e-34 149.1 382 32.5
FAN20G1509 Fragaria x ananassa HOM05D007745 ORTHO05D009771 7.0e-34 149.1 384 33.6
SGA_v2.0_scaffold14G07060 Striga asiatica HOM05D007745 ORTHO05D009771 7.0e-34 149.1 400 31.5
Duzib093G2234 Durio zibethinus HOM05D007745 ORTHO05D009771 1.6e-33 147.9 313 33.2
Gorai.010G012000 Gossypium raimondii HOM05D007745 ORTHO05D009771 7.7e-33 145.6 371 31.0
HanXRQChr02g0038981 Helianthus annuus HOM05D007745 ORTHO05D009771 3.8e-32 143.3 245 37.1
Gohir.D05G199500 Gossypium hirsutum HOM05D007745 ORTHO05D009771 1.5e-31 141.4 382 31.2
MSTRG.22294 Avicennia marina HOM05D007745 ORTHO05D009771 3.2e-31 140.2 413 29.8
Gorai.009G204700 Gossypium raimondii HOM05D007745 ORTHO05D009771 3.2e-31 140.2 383 30.5
Thecc.08G022500 Theobroma cacao HOM05D007745 ORTHO05D009771 4.2e-31 139.8 375 30.1
Gohir.A05G196400 Gossypium hirsutum HOM05D007745 ORTHO05D009771 1.2e-30 138.3 382 30.9
RcHm_v2.0_Chr6g0300521 Rosa chinensis HOM05D007745 ORTHO05D009771 1.2e-30 138.3 393 31.8
Lsat_1_v5_gn_1_18141 Lactuca sativa HOM05D007745 ORTHO05D009771 9.7e-28 128.6 312 32.1
MELO3C010923.2 Cucumis melo HOM05D007745 ORTHO05D009771 1.3e-27 128.3 253 33.6
CiPaw.15G073300 Carya illinoinensis HOM05D007745 ORTHO05D009771 2.2e-27 127.5 375 30.9
ClCG08G015320 Citrullus lanatus HOM05D007745 ORTHO05D009771 4.8e-27 126.3 275 32.4
Sabra14G0030100 Salix brachista HOM05D007745 ORTHO05D009771 8.3e-27 125.6 343 30.6
Eucgr.A00494 Eucalyptus grandis HOM05D007745 ORTHO05D009771 5.3e-26 122.9 374 29.4
TAR628G0088 Trochodendron aralioides HOM05D007745 ORTHO05D009771 5.3e-26 122.9 380 28.9
Migut.N00516 Erythranthe guttata HOM05D007745 ORTHO05D009771 5.9e-25 119.4 383 27.7
Nn5g29499 Nelumbo nucifera HOM05D007745 ORTHO05D009771 6.1e-22 109.4 418 28.2
CiPaw.16G054300 Carya illinoinensis HOM05D007745 ORTHO05D009771 2.3e-21 107.5 351 30.8
HanXRQChr09g0268481 Helianthus annuus HOM05D007745 ORTHO05D009771 3.0e-21 107.1 316 31.0
Nn1g05100 Nelumbo nucifera HOM05D000010 ORTHO05D009771 3.4e-20 103.6 281 32.4
Sed0012259 Sechium edule HOM05D007745 ORTHO05D009771 9.8e-20 102.1 274 28.1
QL02p007506 Quercus lobata HOM05D007745 ORTHO05D009771 1.7e-19 101.3 388 25.0
ECA232G0976 Erigeron canadensis HOM05D007745 ORTHO05D009771 2.8e-19 100.5 391 30.7
CsaV3_2G028480 Cucumis sativus L. HOM05D007745 ORTHO05D009771 8.3e-19 99.0 221 32.6
MBI16_g27546_MAGBIO Magnolia biondii HOM05D007745 ORTHO05D009771 3.1e-18 97.1 322 28.6
Eucgr.F01537 Eucalyptus grandis HOM05D007745 ORTHO05D009771 7.0e-18 95.9 386 26.9
HanXRQChr16g0508531 Helianthus annuus HOM05D007745 ORTHO05D009771 2.0e-17 94.4 382 30.4
Lsat_1_v5_gn_4_122120 Lactuca sativa HOM05D007745 ORTHO05D009771 3.5e-17 93.6 338 26.3
Sed0003155 Sechium edule HOM05D007745 ORTHO05D009771 3.5e-17 93.6 257 28.0
Eucgr.F01536 Eucalyptus grandis HOM05D007745 ORTHO05D009771 7.7e-17 92.4 296 27.0
PSO541G3078 Papaver somniferum HOM05D007745 ORTHO05D009771 1.7e-16 91.3 390 26.2
Eucgr.F01538 Eucalyptus grandis HOM05D007745 ORTHO05D009771 2.9e-16 90.5 299 27.4
MBI16_g33266_MAGBIO Magnolia biondii HOM05D007745 ORTHO05D009771 5.0e-16 89.7 387 27.4
Eucgr.F01539 Eucalyptus grandis HOM05D007745 ORTHO05D009771 1.5e-15 88.2 293 28.7
Cpa.g.sc64.53 Carica papaya HOM05D007745 ORTHO05D009771 1.9e-15 87.8 124 37.9
PSO675G1126 Papaver somniferum HOM05D007745 ORTHO05D009771 1.9e-15 87.8 396 28.5
HPP92_020403 Vanilla planifolia HOM05D007745 ORTHO05D009771 7.2e-15 85.9 297 25.9
Prupe.1G390000 Prunus persica HOM05D007745 ORTHO05D009771 3.0e-13 80.5 64 53.1
Sed0005896 Sechium edule HOM05D007745 ORTHO05D009771 2.6e-12 77.4 124 33.1
Eucgr.F01535 Eucalyptus grandis HOM05D007745 ORTHO05D009771 1.7e-11 74.7 112 33.9
Sed0002042 Sechium edule HOM05D007745 ORTHO05D009771 2.2e-11 74.3 124 33.9
Duzib205G1785 Durio zibethinus HOM05D000010 ORTHO05D000063 4.5e-09 66.6 147 31.3
Gohir.A03G002000 Gossypium hirsutum HOM05D000010 ORTHO05D000063 7.8e-09 65.9 169 31.4
Thecc.03G230900 Theobroma cacao HOM05D000010 ORTHO05D000063 7.8e-09 65.9 147 31.3
HanXRQChr02g0038991 Helianthus annuus HOM05D007745 ORTHO05D009771 1.0e-08 65.5 156 34.6
Duzib084G0346 Durio zibethinus HOM05D000010 ORTHO05D000063 1.3e-08 65.1 147 30.6
Gohir.D03G170300 Gossypium hirsutum HOM05D000010 ORTHO05D000063 1.3e-08 65.1 169 30.8
Gohir.D12G212200 Gossypium hirsutum HOM05D000010 ORTHO05D000063 1.3e-08 65.1 147 31.3
Gorai.008G227800 Gossypium raimondii HOM05D000010 ORTHO05D000063 1.3e-08 65.1 147 31.3
CSS0006031 Camellia sinensis var. sinensis HOM05D007745 ORTHO05D009771 2.3e-08 64.3 274 28.8
Gorai.003G180600 Gossypium raimondii HOM05D000010 ORTHO05D000063 2.3e-08 64.3 169 30.8
COL.COLO4_26369 Corchorus olitorius HOM05D007745 ORTHO05D009771 2.9e-08 63.9 213 31.5
Os10g0359500 Oryza sativa ssp. japonica HOM05D052549 ORTHO05D000063 2.9e-08 63.9 364 23.6
COL.COLO4_17071 Corchorus olitorius HOM05D000010 ORTHO05D000063 3.9e-08 63.5 147 29.9
TWI15G0592 Tripterygium wilfordii HOM05D000010 ORTHO05D000063 6.6e-08 62.8 171 28.1
TWI81G0881 Tripterygium wilfordii HOM05D000010 ORTHO05D000063 8.6e-08 62.4 168 28.6
CsaV3_3G049360 Cucumis sativus L. HOM05D000010 ORTHO05D000063 2.5e-07 60.8 167 28.7
THA.LOC104806103 Tarenaya hassleriana HOM05D000010 ORTHO05D000063 2.5e-07 60.8 156 30.8
Eucgr.D02182 Eucalyptus grandis HOM05D000010 ORTHO05D000063 3.3e-07 60.5 168 27.4
Gohir.A12G209500 Gossypium hirsutum HOM05D000010 ORTHO05D000063 3.3e-07 60.5 147 29.9
ClCG09G012160 Citrullus lanatus HOM05D000010 ORTHO05D000063 4.3e-07 60.1 169 28.4
THA.LOC104827746 Tarenaya hassleriana HOM05D000010 ORTHO05D000063 5.6e-07 59.7 155 29.0
Gohir.A11G030100 Gossypium hirsutum HOM05D000010 ORTHO05D000063 1.2e-06 58.5 158 29.7
Gohir.D11G028700 Gossypium hirsutum HOM05D000010 ORTHO05D000063 1.2e-06 58.5 158 29.7
Gorai.007G031300 Gossypium raimondii HOM05D000010 ORTHO05D000063 1.2e-06 58.5 158 29.7
Hma1.2p1_2785F.1_g328430 Hydrangea macrophylla HOM05D000010 ORTHO05D000063 1.2e-06 58.5 148 30.4
Sed0001300 Sechium edule HOM05D000010 ORTHO05D000063 1.2e-06 58.5 168 27.4
CAN.G1659.1 Capsicum annuum HOM05D000010 ORTHO05D000063 1.6e-06 58.2 181 28.2
Eucgr.E00298 Eucalyptus grandis HOM05D000010 ORTHO05D000063 1.6e-06 58.2 154 27.9
Gohir.A08G158200 Gossypium hirsutum HOM05D000010 ORTHO05D000063 1.6e-06 58.2 147 30.6
HanXRQChr03g0085841 Helianthus annuus HOM05D000010 ORTHO05D000063 1.6e-06 58.2 151 31.8
Sabra01G0112800 Salix brachista HOM05D000010 ORTHO05D000063 2.1e-06 57.8 148 31.1
TAR636G1308 Trochodendron aralioides HOM05D000010 ORTHO05D000063 2.1e-06 57.8 148 30.4
Ah.12g054600 Amaranthus hybridus HOM05D000010 ORTHO05D000063 2.8e-06 57.4 171 29.2
PSO782G4105 Papaver somniferum HOM05D000010 ORTHO05D000063 2.8e-06 57.4 155 31.6
Peaxi162Scf00102g00626 Petunia axillaris HOM05D000010 ORTHO05D000063 2.8e-06 57.4 148 30.4
Potri.001G144400 Populus trichocarpa HOM05D000010 ORTHO05D000063 2.8e-06 57.4 148 29.7
Gorai.004G186700 Gossypium raimondii HOM05D000010 ORTHO05D000063 3.6e-06 57.0 147 29.9
PSO063G0265 Papaver somniferum HOM05D000010 ORTHO05D000063 3.6e-06 57.0 152 32.2
ECA240G3972 Erigeron canadensis HOM05D000010 ORTHO05D000063 4.7e-06 56.6 151 29.8
Manes.15G169500 Manihot esculenta HOM05D000010 ORTHO05D000063 4.7e-06 56.6 148 29.7
Nn1g00574 Nelumbo nucifera HOM05D000010 ORTHO05D000063 4.7e-06 56.6 148 29.7
PGR031G0073 Punica granatum HOM05D000010 ORTHO05D000063 4.7e-06 56.6 168 29.2
CiPaw.11G091300 Carya illinoinensis HOM05D000010 ORTHO05D000063 6.1e-06 56.2 154 27.9
Potri.003G089800 Populus trichocarpa HOM05D000010 ORTHO05D000063 6.1e-06 56.2 148 29.7
Actinidia14817 Actinidia chinensis HOM05D000010 ORTHO05D000063 8.0e-06 55.8 148 29.1
CAN.G195.5 Capsicum annuum HOM05D000010 ORTHO05D000302 8.0e-06 55.8 82 34.1
Lsat_1_v5_gn_6_64840 Lactuca sativa HOM05D000010 ORTHO05D000063 8.0e-06 55.8 167 28.1
Os02g0579000 Oryza sativa ssp. japonica HOM05D000010 ORTHO05D000302 8.0e-06 55.8 83 39.8
Hund14418 Selenicereus undatus HOM05D000010 ORTHO05D000063 8.0e-06 55.8 257 24.5
PGSC0003DMG400017505 Solanum tuberosum HOM05D000010 ORTHO05D000063 8.0e-06 55.8 262 25.6


User provided reference genes

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