Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1124.9 Capsicum annuum HOM05D002975 ORTHO05D115660 2.2e-46 188.7 102 100.0
CAN.G1370.2 Capsicum annuum HOM05D002975 ORTHO05D003564 2.0e-12 75.9 64 73.4
Peaxi162Scf00660g00052 Petunia axillaris HOM05D002975 ORTHO05D003564 3.5e-12 75.1 64 73.4
Nitab4.5_0000981g0030 Nicotiana tabacum HOM05D002975 ORTHO05D003564 1.3e-11 73.2 64 70.3
PGSC0003DMG400027875 Solanum tuberosum HOM05D002975 ORTHO05D003564 1.7e-11 72.8 64 70.3
Ca_14736_v3 Cicer arietinum L. HOM05D002975 ORTHO05D003564 3.9e-11 71.6 63 69.8
Solyc12g005060.1 Solanum lycopersicum HOM05D002975 ORTHO05D003564 3.9e-11 71.6 62 69.4
Sopen12g001060 Solanum pennellii HOM05D002975 ORTHO05D003564 3.9e-11 71.6 62 69.4
PGR083G0161 Punica granatum HOM05D002975 ORTHO05D003564 6.6e-11 70.9 88 51.1
CiPaw.10G071300 Carya illinoinensis HOM05D002975 ORTHO05D003564 2.5e-10 68.9 64 67.2
Ciclev10008444m.g Citrus clementina HOM05D002975 ORTHO05D003564 2.5e-10 68.9 63 68.3
Eucgr.F00755 Eucalyptus grandis HOM05D002975 ORTHO05D003564 3.3e-10 68.6 62 67.7
Nitab4.5_0007084g0010 Nicotiana tabacum HOM05D002975 ORTHO05D003564 3.3e-10 68.6 64 67.2
Zm00001eb322600 Zea mays HOM05D002975 ORTHO05D003564 4.3e-10 68.2 62 66.1
arahy.Tifrunner.gnm1.ann1.KSV0XM Arachis hypogaea HOM05D002975 ORTHO05D003564 5.6e-10 67.8 62 66.1
CAN.G166.1 Capsicum annuum HOM05D009823 ORTHO05D011888 5.6e-10 67.8 62 62.9
arahy.Tifrunner.gnm1.ann1.F6CLKD Arachis hypogaea HOM05D002975 ORTHO05D003564 7.3e-10 67.4 62 66.1
Cc05_g13860 Coffea canephora HOM05D002975 ORTHO05D003564 7.3e-10 67.4 62 64.5
THA.LOC104808203 Tarenaya hassleriana HOM05D002975 ORTHO05D003564 7.3e-10 67.4 62 66.1
Migut.H01823 Erythranthe guttata HOM05D002975 ORTHO05D003564 9.5e-10 67.0 62 66.1
Glyma.13G204800 Glycine max HOM05D002975 ORTHO05D003564 1.6e-09 66.2 62 62.9
Glyma.15G107900 Glycine max HOM05D002975 ORTHO05D003564 1.6e-09 66.2 62 62.9
Os07g0513000 Oryza sativa ssp. japonica HOM05D002975 ORTHO05D003564 1.6e-09 66.2 64 64.1
MSTRG.12977 Avicennia marina HOM05D002975 ORTHO05D003564 2.1e-09 65.9 62 64.5
COL.COLO4_31778 Corchorus olitorius HOM05D002975 ORTHO05D003564 2.1e-09 65.9 64 65.6
Aa31LG9G9750 Aethionema arabicum HOM05D002975 ORTHO05D003564 2.8e-09 65.5 58 69.0
CSS0000198 Camellia sinensis var. sinensis HOM05D002975 ORTHO05D003564 2.8e-09 65.5 62 66.1
Peaxi162Scf01102g00015 Petunia axillaris HOM05D002975 ORTHO05D003564 2.8e-09 65.5 64 64.1
Psat5g178400 Pisum sativum HOM05D002975 ORTHO05D003564 2.8e-09 65.5 88 48.9
TWI63G1627 Tripterygium wilfordii HOM05D002975 ORTHO05D003564 2.8e-09 65.5 64 64.1
Ah.04g165920 Amaranthus hybridus HOM05D002975 ORTHO05D003564 3.6e-09 65.1 58 69.0
Potri.011G024700 Populus trichocarpa HOM05D002975 ORTHO05D003564 4.7e-09 64.7 64 64.1
Lsat_1_v5_gn_7_16100 Lactuca sativa HOM05D002975 ORTHO05D003564 6.2e-09 64.3 64 65.6
VMungo0540G1725 Vigna mungo HOM05D002975 ORTHO05D003564 6.2e-09 64.3 63 66.7
FvH4_3g02060 Fragaria vesca HOM05D002975 ORTHO05D003564 8.0e-09 63.9 64 62.5
FAN25G2171 Fragaria x ananassa HOM05D002975 ORTHO05D003564 8.0e-09 63.9 64 62.5
THA.LOC104818017 Tarenaya hassleriana HOM05D002975 ORTHO05D003564 1.1e-08 63.5 64 64.1
Actinidia05514 Actinidia chinensis HOM05D002975 ORTHO05D003564 1.4e-08 63.2 64 62.5
ATR0794G024 Amborella trichopoda HOM05D002975 ORTHO05D003564 1.4e-08 63.2 64 60.9
Lj2P268T28 Lonicera japonica HOM05D002975 ORTHO05D003564 1.4e-08 63.2 62 66.1
Medtr2g023290 Medicago truncatula HOM05D002975 ORTHO05D005855 1.4e-08 63.2 64 64.1
Ah.09g234900 Amaranthus hybridus HOM05D002975 ORTHO05D003564 2.3e-08 62.4 64 62.5
Phvul.006G044600 Phaseolus vulgaris HOM05D002975 ORTHO05D003564 4.0e-08 61.6 63 61.9
RcHm_v2.0_Chr5g0002961 Rosa chinensis HOM05D002975 ORTHO05D003564 4.0e-08 61.6 64 60.9
SEGI_20692 Sequoiadendron giganteum HOM05D002975 ORTHO05D003564 4.0e-08 61.6 88 48.9
Aqoxy1G02146 Aquilegia oxysepala HOM05D002975 ORTHO05D003564 5.2e-08 61.2 62 62.9
CiPaw.09G092200 Carya illinoinensis HOM05D002975 ORTHO05D003564 5.2e-08 61.2 64 60.9
Rhsim13G0154000 Rhododendron simsii HOM05D002975 ORTHO05D003564 5.2e-08 61.2 62 62.9
ClCG10G005390 Citrullus lanatus HOM05D002975 ORTHO05D003564 6.8e-08 60.8 62 58.1
Sc05g0009160 Simmondsia chinensis HOM05D002975 ORTHO05D020141 6.8e-08 60.8 64 60.9
Sc05g0009230 Simmondsia chinensis HOM05D002975 ORTHO05D003564 6.8e-08 60.8 64 60.9
Sc05g0009940 Simmondsia chinensis HOM05D002975 ORTHO05D003564 6.8e-08 60.8 64 60.9
SGA_v2.0_scaffold18G08542 Striga asiatica HOM05D002975 ORTHO05D003564 6.8e-08 60.8 64 59.4
RhsimUnG0249800 Rhododendron simsii HOM05D002975 ORTHO05D003564 1.2e-07 60.1 60 66.7
CsaV3_3G005120 Cucumis sativus L. HOM05D002975 ORTHO05D003564 1.5e-07 59.7 62 56.5
Glyma.08G317100 Glycine max HOM05D002975 ORTHO05D003564 4.4e-07 58.2 62 59.7
arahy.Tifrunner.gnm1.ann1.B1KDZW Arachis hypogaea HOM05D002975 ORTHO05D003564 5.8e-07 57.8 62 61.3
MELO3C025376.2 Cucumis melo HOM05D002975 ORTHO05D003564 5.8e-07 57.8 62 56.5
HPP92_015982 Vanilla planifolia HOM05D002975 ORTHO05D003564 1.7e-06 56.2 62 56.5
Oeu051209.1 Olea europaea HOM05D002975 ORTHO05D003564 2.2e-06 55.8 64 59.4
CAN.G177.16 Capsicum annuum HOM05D000004 ORTHO05D011888 6.4e-06 54.3 53 56.6
GSVIVG01012724001 Vitis vinifera HOM05D002890 ORTHO05D005855 8.3e-06 53.9 51 64.7


User provided reference genes

Program Settings