Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1110.21 Capsicum annuum HOM05D002799 ORTHO05D008889 1.5e-104 382.9 198 100.0
Sopen10g002540 Solanum pennellii HOM05D002799 ORTHO05D008889 1.9e-94 349.4 198 90.4
Nitab4.5_0002229g0090 Nicotiana tabacum HOM05D002799 ORTHO05D008889 4.7e-90 334.7 198 84.3
Nitab4.5_0000207g0420 Nicotiana tabacum HOM05D002799 ORTHO05D008889 5.2e-89 331.3 198 83.8
PGSC0003DMG400024993 Solanum tuberosum HOM05D002799 ORTHO05D008889 8.4e-87 323.9 182 92.3
Peaxi162Scf00257g00081 Petunia axillaris HOM05D002799 ORTHO05D008889 3.4e-72 275.4 157 89.2
Solyc10g006600.4 Solanum lycopersicum HOM05D002799 ORTHO05D008889 2.9e-71 272.3 140 97.1
Cc05_g12950 Coffea canephora HOM05D002799 ORTHO05D008889 1.8e-65 253.1 177 71.8
Haze_00591 Corylus avellana HOM05D002799 ORTHO05D008889 5.3e-65 251.5 180 70.0
RcHm_v2.0_Chr1g0383841 Rosa chinensis HOM05D002799 ORTHO05D008889 5.3e-65 251.5 176 71.0
CiPaw.05G237000 Carya illinoinensis HOM05D002799 ORTHO05D008889 6.9e-65 251.1 182 69.2
Prupe.2G323800 Prunus persica HOM05D002799 ORTHO05D008889 2.6e-64 249.2 176 71.0
FAN01G1859 Fragaria x ananassa HOM05D002799 ORTHO05D007076 4.5e-64 248.4 176 69.9
Dinv29173 Davidia involucrata HOM05D002799 ORTHO05D008889 5.8e-64 248.1 176 70.5
FvH4_7g33591 Fragaria vesca HOM05D002799 ORTHO05D008889 1.3e-63 246.9 176 68.8
FAN03G1078 Fragaria x ananassa HOM05D002799 ORTHO05D007076 2.2e-63 246.1 177 68.9
FvH4_7g33580 Fragaria vesca HOM05D002799 ORTHO05D008889 6.5e-63 244.6 176 68.2
CSS0012005 Camellia sinensis var. sinensis HOM05D002799 ORTHO05D008889 1.1e-62 243.8 180 68.3
CSS0036576 Camellia sinensis var. sinensis HOM05D002799 ORTHO05D008889 1.1e-62 243.8 180 68.3
DCAR_010548 Daucus carota HOM05D002799 ORTHO05D008889 1.1e-62 243.8 182 69.2
FAN10G0267 Fragaria x ananassa HOM05D002799 ORTHO05D007076 1.1e-62 243.8 176 68.8
MSTRG.17884 Avicennia marina HOM05D002799 ORTHO05D008889 1.4e-62 243.4 171 71.9
Manes.08G164500 Manihot esculenta HOM05D002799 ORTHO05D008889 1.9e-62 243.0 174 71.3
Actinidia08736 Actinidia chinensis HOM05D002799 ORTHO05D008889 2.5e-62 242.7 176 69.3
Rhsim03G0220500 Rhododendron simsii HOM05D000526 ORTHO05D000956 2.5e-62 242.7 170 70.6
Migut.M01834 Erythranthe guttata HOM05D002799 ORTHO05D008889 2.1e-61 239.6 172 68.6
MD07G1305700 Malus domestica HOM05D002799 ORTHO05D008889 3.5e-61 238.8 177 68.4
TWI60G0329 Tripterygium wilfordii HOM05D002799 ORTHO05D008889 1.3e-60 236.9 172 68.6
TAR629G0193 Trochodendron aralioides HOM05D002799 ORTHO05D008889 1.3e-60 236.9 180 66.7
QL09p025834 Quercus lobata HOM05D002799 ORTHO05D008889 1.8e-60 236.5 180 67.2
Sabra19G0057600 Salix brachista HOM05D002799 ORTHO05D008889 3.0e-60 235.7 181 66.3
GSVIVG01024450001 Vitis vinifera HOM05D002799 ORTHO05D008889 1.9e-59 233.0 182 64.8
Ciclev10032834m.g Citrus clementina HOM05D002799 ORTHO05D008889 3.3e-59 232.3 176 67.6
Thecc.04G001600 Theobroma cacao HOM05D002799 ORTHO05D008889 3.3e-59 232.3 181 66.3
ECA236G2689 Erigeron canadensis HOM05D002799 ORTHO05D008889 1.3e-58 230.3 177 65.5
Potri.019G048200 Populus trichocarpa HOM05D002799 ORTHO05D008889 2.1e-58 229.6 174 66.1
THA.LOC104803694 Tarenaya hassleriana HOM05D002799 ORTHO05D008889 2.8e-58 229.2 193 59.1
Eucgr.K03383 Eucalyptus grandis HOM05D002799 ORTHO05D008889 6.3e-58 228.0 181 65.2
CANSAT21G1155 Cannabis sativa HOM05D002799 ORTHO05D008889 1.1e-57 227.3 171 67.8
vmacro06499 Vaccinium macrocarpon HOM05D002799 ORTHO05D008889 2.4e-57 226.1 155 72.9
arahy.Tifrunner.gnm1.ann1.31RF02 Arachis hypogaea HOM05D002799 ORTHO05D008889 6.9e-57 224.6 173 64.2
Gohir.D11G175400 Gossypium hirsutum HOM05D002799 ORTHO05D008889 9.0e-57 224.2 180 64.4
Gorai.007G188000 Gossypium raimondii HOM05D002799 ORTHO05D008889 9.0e-57 224.2 180 64.4
Nn1g02011 Nelumbo nucifera HOM05D002799 ORTHO05D008889 9.0e-57 224.2 180 65.0
Oeu053393.1 Olea europaea HOM05D002799 ORTHO05D008889 9.0e-57 224.2 155 71.0
arahy.Tifrunner.gnm1.ann1.LMI616 Arachis hypogaea HOM05D002799 ORTHO05D008889 1.2e-56 223.8 173 63.6
arahy.Tifrunner.gnm1.ann1.10QB4Z Arachis hypogaea HOM05D002799 ORTHO05D008889 3.4e-56 222.2 173 63.6
Medtr8g063470 Medicago truncatula HOM05D002799 ORTHO05D008889 3.4e-56 222.2 177 64.4
Gohir.A11G169200 Gossypium hirsutum HOM05D002799 ORTHO05D008889 4.5e-56 221.9 180 63.9
arahy.Tifrunner.gnm1.ann1.B4EAVD Arachis hypogaea HOM05D002799 ORTHO05D008889 1.3e-55 220.3 173 63.0
Lalb_Chr09g0335071 Lupinus albus HOM05D002799 ORTHO05D008889 1.7e-55 219.9 167 63.5
TPR.G670 Trifolium pratense HOM05D002799 ORTHO05D008889 2.2e-55 219.5 170 63.5
AL3G49530 Arabidopsis lyrata HOM05D002799 ORTHO05D008889 1.9e-54 216.5 176 62.5
Carub.0003s3061 Capsella rubella HOM05D002799 ORTHO05D008889 5.5e-54 214.9 181 60.8
Atru.chr12.2012 Acer truncatum HOM05D002799 ORTHO05D008889 7.2e-54 214.5 192 58.3
Glyma.08G289900 Glycine max HOM05D002799 ORTHO05D008889 9.3e-54 214.2 171 63.7
unitig_746.g26651 Utricularia gibba HOM05D002799 ORTHO05D008889 9.3e-54 214.2 174 60.3
AT2G16790 Arabidopsis thaliana HOM05D002799 ORTHO05D008889 1.6e-53 213.4 179 60.9
BcaB07g31750 Brassica carinata HOM05D002799 ORTHO05D008889 2.7e-53 212.6 181 61.3
Glyma.18G134600 Glycine max HOM05D002799 ORTHO05D008889 4.6e-53 211.8 171 62.0
BcaC04g23004 Brassica carinata HOM05D002799 ORTHO05D008889 1.0e-52 210.7 181 58.6
C09p13130 Brassica napus HOM05D002799 ORTHO05D008889 1.0e-52 210.7 181 58.6
Sed0001745 Sechium edule HOM05D002799 ORTHO05D008889 1.0e-52 210.7 171 63.2
CARHR107040 Cardamine hirsuta HOM05D002799 ORTHO05D008889 1.3e-52 210.3 179 59.8
SGA_v2.0_scaffold70G23573 Striga asiatica HOM05D002799 ORTHO05D008889 1.3e-52 210.3 165 63.0
A09p11140 Brassica napus HOM05D002799 ORTHO05D008889 2.3e-52 209.5 178 59.0
Lj1P1032T28 Lonicera japonica HOM05D002799 ORTHO05D008889 1.5e-51 206.8 154 68.2
Sp3g29930 Schrenkiella parvula HOM05D002799 ORTHO05D008889 1.9e-51 206.5 180 59.4
MELO3C005426.2 Cucumis melo HOM05D002799 ORTHO05D008889 2.5e-51 206.1 174 60.9
BraA09t36756Z Brassica rapa HOM05D002799 ORTHO05D008889 3.3e-51 205.7 172 59.3
Phvul.003G054200 Phaseolus vulgaris HOM05D002799 ORTHO05D008889 3.3e-51 205.7 174 59.2
Lsat_1_v5_gn_5_146100 Lactuca sativa HOM05D002799 ORTHO05D008889 7.4e-51 204.5 175 58.3
Aa31LG8G14030 Aethionema arabicum HOM05D002799 ORTHO05D008889 9.7e-51 204.1 175 57.7
VMungo0251G2787 Vigna mungo HOM05D002799 ORTHO05D008889 9.7e-51 204.1 171 60.2
Lsat_1_v5_gn_8_74380 Lactuca sativa HOM05D002799 ORTHO05D008889 1.6e-50 203.4 178 56.7
AUR62028150 Chenopodium quinoa HOM05D002799 ORTHO05D008889 3.7e-50 202.2 170 61.8
Thhalv10022876m.g Eutrema salsugineum HOM05D002799 ORTHO05D008889 3.7e-50 202.2 170 62.9
BolC9t54208H Brassica oleracea HOM05D002799 ORTHO05D008889 8.2e-50 201.1 169 59.8
Phvul.003G053900 Phaseolus vulgaris HOM05D002799 ORTHO05D008889 8.2e-50 201.1 174 58.0
CsaV3_5G005340 Cucumis sativus L. HOM05D002799 ORTHO05D008889 2.4e-49 199.5 166 61.4
EL10Ac3g05099 Beta vulgaris HOM05D002799 ORTHO05D008889 3.1e-49 199.1 170 59.4
Lj4g0019925 Lotus japonicus HOM05D002799 ORTHO05D008889 2.0e-48 196.4 156 61.5
Ah.04g157280 Amaranthus hybridus HOM05D002799 ORTHO05D008889 5.9e-48 194.9 175 56.0
Nn3g19277 Nelumbo nucifera HOM05D002799 ORTHO05D008889 7.7e-48 194.5 151 62.9
Duzib133G0126 Durio zibethinus HOM05D002799 ORTHO05D008889 1.0e-47 194.1 153 65.4
Os06g0114650 Oryza sativa ssp. japonica HOM05D002799 ORTHO05D008889 9.4e-46 187.6 170 57.6
PSO717G0064 Papaver somniferum HOM05D002799 ORTHO05D008889 3.9e-44 182.2 192 54.2
PSO675G5486 Papaver somniferum HOM05D002799 ORTHO05D008889 2.5e-43 179.5 191 53.9
ATR0829G224 Amborella trichopoda HOM05D002799 ORTHO05D008889 2.4e-41 172.9 190 49.5
Aqoxy7G00884 Aquilegia oxysepala HOM05D002799 ORTHO05D008889 1.0e-39 167.5 131 63.4
Sc19g0000240 Simmondsia chinensis HOM05D002799 ORTHO05D008889 2.9e-39 166.0 131 61.8
ClCG01G005050 Citrullus lanatus HOM05D002799 ORTHO05D008889 1.9e-38 163.3 134 62.7
COL.COLO4_19775 Corchorus olitorius HOM05D002799 ORTHO05D008889 2.5e-38 162.9 127 65.4
Psat4g127040 Pisum sativum HOM05D002799 ORTHO05D008889 7.2e-38 161.4 127 64.6
AagrBONN_evm.TU.Sc2ySwM_362.1504 Anthoceros agrestis HOM05D002799 ORTHO05D008889 2.7e-37 159.5 180 46.7
Ca_14681_v3 Cicer arietinum L. HOM05D002799 ORTHO05D008889 3.6e-37 159.1 127 63.8
TPR.G26908 Trifolium pratense HOM05D002799 ORTHO05D008889 7.9e-37 157.9 122 62.3
Mapoly0046s0106 Marchantia polymorpha HOM05D002799 ORTHO05D008889 1.8e-36 156.8 174 49.4
PGR004G1571 Punica granatum HOM05D002799 ORTHO05D008889 4.4e-35 152.1 130 61.5
Pp3c5_2750 Physcomitrium patens HOM05D002799 ORTHO05D008889 5.7e-35 151.8 195 45.1
MD01G1233600 Malus domestica HOM05D002799 ORTHO05D008889 1.2e-32 144.1 98 68.4
Rhsim03G0164800 Rhododendron simsii HOM05D002799 ORTHO05D008889 1.0e-31 141.0 103 68.9
SMO174G0264 Selaginella moellendorffii HOM05D002799 ORTHO05D008889 4.7e-29 132.1 163 46.0
PSO675G4133 Papaver somniferum HOM05D002799 ORTHO05D008889 3.1e-25 119.4 148 48.6
SHI03438 Sapria himalayana HOM05D002799 ORTHO05D008889 9.1e-25 117.9 133 49.6
HPP92_002455 Vanilla planifolia HOM05D002799 ORTHO05D008889 1.9e-22 110.2 175 38.9
Cre08.g385750 Chlamydomonas reinhardtii HOM05D002799 ORTHO05D008889 1.5e-19 100.5 172 37.2
MCO08G110 Micromonas commoda HOM05D002799 ORTHO05D008889 1.2e-16 90.9 156 37.8
BcaB03g16409 Brassica carinata HOM05D002799 ORTHO05D008889 5.9e-16 88.6 109 47.7
PRCOL_00003203 Prasinoderma coloniale HOM05D002799 ORTHO05D008889 2.2e-15 86.7 156 37.2
C07p06790 Brassica napus HOM05D002799 ORTHO05D008889 2.9e-15 86.3 132 40.2
Cfa026682 Carpinus fangiana HOM05D002799 ORTHO05D008889 4.0e-12 75.9 169 32.0
Ca_28676_v3 Cicer arietinum L. HOM05D002799 ORTHO05D008889 5.2e-12 75.5 158 33.5
HanXRQChr10g0305151 Helianthus annuus HOM05D002799 ORTHO05D008889 4.9e-10 68.9 48 62.5
Zm00001eb177740 Zea mays HOM05D002799 ORTHO05D008889 1.9e-06 57.0 41 65.9


User provided reference genes

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