Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G111.42 Capsicum annuum HOM05D002160 ORTHO05D002012 6.7e-32 140.2 77 100.0
Sopen06g001440 Solanum pennellii HOM05D002160 ORTHO05D002012 4.6e-25 117.5 77 85.7
Solyc06g005465.1 Solanum lycopersicum HOM05D002160 ORTHO05D002012 8.7e-24 113.2 77 80.5
Peaxi162Scf00946g00028 Petunia axillaris HOM05D002160 ORTHO05D002012 9.0e-21 103.2 77 76.6
CAN.G394.56 Capsicum annuum HOM05D002160 ORTHO05D002012 6.5e-19 97.1 78 74.4
Sopen06g032540 Solanum pennellii HOM05D002160 ORTHO05D002012 2.2e-14 82.0 78 69.2
Dinv17000 Davidia involucrata HOM05D002160 ORTHO05D002012 2.4e-13 78.6 80 70.0
Dinv42949 Davidia involucrata HOM05D002160 ORTHO05D002012 2.4e-13 78.6 80 70.0
Dinv43151 Davidia involucrata HOM05D002160 ORTHO05D002012 2.4e-13 78.6 80 70.0
Hma1.2p1_0418F.1_g149080 Hydrangea macrophylla HOM05D002160 ORTHO05D002012 2.4e-13 78.6 79 64.6
Hma1.2p1_0035F.1_g022400 Hydrangea macrophylla HOM05D002160 ORTHO05D002012 4.1e-13 77.8 81 64.2
Hma1.2p1_0418F.1_g149100 Hydrangea macrophylla HOM05D002160 ORTHO05D002012 9.1e-13 76.6 81 66.7
Nitab4.5_0022803g0010 Nicotiana tabacum HOM05D002160 ORTHO05D002012 9.1e-13 76.6 77 67.5
Dinv12424 Davidia involucrata HOM05D002160 ORTHO05D002012 1.2e-12 76.3 80 68.8
Peaxi162Scf00774g00011 Petunia axillaris HOM05D002160 ORTHO05D002012 1.5e-12 75.9 78 66.7
Nitab4.5_0000317g0020 Nicotiana tabacum HOM05D002160 ORTHO05D002012 3.4e-12 74.7 99 54.5
Sp6g40100 Schrenkiella parvula HOM05D002160 ORTHO05D002012 4.5e-12 74.3 81 51.9
CSS0035762 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 1.3e-11 72.8 80 65.0
CSS0001348 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 1.7e-11 72.4 79 60.8
Hma1.2p1_0035F.1_g022410 Hydrangea macrophylla HOM05D002160 ORTHO05D002012 1.7e-11 72.4 83 53.0
Cc01_g12850 Coffea canephora HOM05D002160 ORTHO05D002012 2.9e-11 71.6 78 60.3
Thhalv10015167m.g Eutrema salsugineum HOM05D002160 ORTHO05D002012 1.1e-10 69.7 80 48.8
CAN.G405.1 Capsicum annuum HOM05D002160 ORTHO05D002012 1.9e-10 68.9 80 67.5
Solyc06g076140.4 Solanum lycopersicum HOM05D002160 ORTHO05D002012 2.5e-10 68.6 78 65.4
Nitab4.5_0003635g0040 Nicotiana tabacum HOM05D002160 ORTHO05D002012 4.2e-10 67.8 66 54.5
BcaC06g31984 Brassica carinata HOM05D002160 ORTHO05D002012 5.5e-10 67.4 80 47.5
BcaNung02128 Brassica carinata HOM05D002160 ORTHO05D002012 5.5e-10 67.4 80 47.5
A03p00650 Brassica napus HOM05D002160 ORTHO05D002012 5.5e-10 67.4 81 48.1
A10p33280 Brassica napus HOM05D002160 ORTHO05D002012 5.5e-10 67.4 80 47.5
C09p74190 Brassica napus HOM05D002160 ORTHO05D002012 5.5e-10 67.4 80 47.5
BolC9t60152H Brassica oleracea HOM05D002160 ORTHO05D002012 5.5e-10 67.4 80 47.5
BraA03t09455Z Brassica rapa HOM05D002160 ORTHO05D002012 5.5e-10 67.4 81 48.1
PGSC0003DMG400030321 Solanum tuberosum HOM05D002160 ORTHO05D002012 5.5e-10 67.4 78 64.1
CiPaw.14G068500 Carya illinoinensis HOM05D002160 ORTHO05D002012 2.1e-09 65.5 82 52.4
HanXRQChr11g0350841 Helianthus annuus HOM05D002160 ORTHO05D002012 3.6e-09 64.7 80 58.8
QL07p048278 Quercus lobata HOM05D002160 ORTHO05D002012 3.6e-09 64.7 79 58.2
DCAR_005972 Daucus carota HOM05D002160 ORTHO05D002012 4.6e-09 64.3 119 44.5
SalBow3G1981 Salvia bowleyana HOM05D002160 ORTHO05D002012 4.6e-09 64.3 52 63.5
Lsat_1_v5_gn_9_23460 Lactuca sativa HOM05D002160 ORTHO05D002012 6.1e-09 63.9 80 57.5
C03p00920 Brassica napus HOM05D002160 ORTHO05D002012 7.9e-09 63.5 81 48.1
BolC3t12655H Brassica oleracea HOM05D002160 ORTHO05D002012 7.9e-09 63.5 81 48.1
CiPaw.13G094600 Carya illinoinensis HOM05D002160 ORTHO05D002012 7.9e-09 63.5 81 63.0
Carub.0006s0117 Capsella rubella HOM05D002160 ORTHO05D002012 1.0e-08 63.2 77 59.7
Manes.08G079200 Manihot esculenta HOM05D002160 ORTHO05D002012 1.0e-08 63.2 80 56.2
CiPaw.09G192500 Carya illinoinensis HOM05D002160 ORTHO05D002012 1.4e-08 62.8 80 62.5
Duzib093G1046 Durio zibethinus HOM05D002160 ORTHO05D002012 1.4e-08 62.8 81 61.7
QL07p048273 Quercus lobata HOM05D002160 ORTHO05D002012 1.4e-08 62.8 79 62.0
TAR369G0024 Trochodendron aralioides HOM05D002160 ORTHO05D002012 1.8e-08 62.4 80 61.2
CiPaw.10G145500 Carya illinoinensis HOM05D002160 ORTHO05D002012 2.3e-08 62.0 80 55.0
PGR004G1599 Punica granatum HOM05D002160 ORTHO05D002012 2.3e-08 62.0 80 57.5
Solyc04g058150.3 Solanum lycopersicum HOM05D002160 ORTHO05D002012 3.0e-08 61.6 78 62.8
Sopen04g025910 Solanum pennellii HOM05D002160 ORTHO05D002012 3.0e-08 61.6 78 60.3
Sopen04g026050 Solanum pennellii HOM05D002160 ORTHO05D002012 3.0e-08 61.6 78 62.8
AL6G11600 Arabidopsis lyrata HOM05D002160 ORTHO05D002012 3.9e-08 61.2 77 58.4
PGR102G1600 Punica granatum HOM05D002160 ORTHO05D002012 3.9e-08 61.2 80 57.5
Aa31LG3G1880 Aethionema arabicum HOM05D002160 ORTHO05D002012 5.1e-08 60.8 82 45.1
BcaC05g29516 Brassica carinata HOM05D002160 ORTHO05D002012 5.1e-08 60.8 84 58.3
Manes.08G079262 Manihot esculenta HOM05D002160 ORTHO05D002012 5.1e-08 60.8 81 55.6
Solyc04g058100.3 Solanum lycopersicum HOM05D002160 ORTHO05D002012 5.1e-08 60.8 78 60.3
THA.LOC104816271 Tarenaya hassleriana HOM05D002160 ORTHO05D002012 5.1e-08 60.8 81 59.3
VMungo1383G3367 Vigna mungo HOM05D002160 ORTHO05D002012 5.1e-08 60.8 80 58.8
Lj3g0021630 Lotus japonicus HOM05D002160 ORTHO05D002012 6.7e-08 60.5 83 59.0
Nitab4.5_0002557g0020 Nicotiana tabacum HOM05D002160 ORTHO05D002012 6.7e-08 60.5 78 61.5
Rhsim04G0157100 Rhododendron simsii HOM05D002160 ORTHO05D002012 6.7e-08 60.5 77 61.0
THA.LOC104823261 Tarenaya hassleriana HOM05D002160 ORTHO05D002012 6.7e-08 60.5 81 56.8
GSVIVG01034174001 Vitis vinifera HOM05D002160 ORTHO05D002012 6.7e-08 60.5 81 61.7
Actinidia26465 Actinidia chinensis HOM05D002160 ORTHO05D002012 8.8e-08 60.1 80 61.2
DCAR_018908 Daucus carota HOM05D002160 ORTHO05D002012 8.8e-08 60.1 80 58.8
BcaB01g06159 Brassica carinata HOM05D002160 ORTHO05D002012 1.1e-07 59.7 81 46.9
Carub.0003s0850 Capsella rubella HOM05D002160 ORTHO05D002012 1.1e-07 59.7 82 59.8
Duzib106G1044 Durio zibethinus HOM05D002160 ORTHO05D002012 1.1e-07 59.7 80 58.8
Duzib128G1340 Durio zibethinus HOM05D002160 ORTHO05D002012 1.1e-07 59.7 80 58.8
TWI31G0095 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 1.1e-07 59.7 77 48.1
AT3G09390 Arabidopsis thaliana HOM05D002160 ORTHO05D002012 1.5e-07 59.3 82 58.5
Gorai.012G103800 Gossypium raimondii HOM05D002160 ORTHO05D002012 1.5e-07 59.3 81 60.5
Oeu051437.1 Olea europaea HOM05D002160 ORTHO05D002012 1.5e-07 59.3 66 53.0
AT5G02380 Arabidopsis thaliana HOM05D002160 ORTHO05D002012 2.0e-07 58.9 77 57.1
C05p58620 Brassica napus HOM05D002160 ORTHO05D002012 2.0e-07 58.9 84 57.1
Os12g0571100 Oryza sativa ssp. japonica HOM05D002160 ORTHO05D002012 2.0e-07 58.9 79 43.0
Atru.chr3.3902 Acer truncatum HOM05D002160 ORTHO05D002012 2.6e-07 58.5 81 60.5
Gohir.A04G082400 Gossypium hirsutum HOM05D002160 ORTHO05D002012 2.6e-07 58.5 81 60.5
Gohir.D04G121400 Gossypium hirsutum HOM05D002160 ORTHO05D002012 2.6e-07 58.5 81 60.5
Os12g0567800 Oryza sativa ssp. japonica HOM05D002160 ORTHO05D002012 2.6e-07 58.5 79 43.0
Os12g0570700 Oryza sativa ssp. japonica HOM05D002160 ORTHO05D002012 2.6e-07 58.5 80 52.5
BcaC05g29670 Brassica carinata HOM05D002160 ORTHO05D002012 3.3e-07 58.2 84 57.1
A05p39590 Brassica napus HOM05D002160 ORTHO05D002012 3.3e-07 58.2 82 57.3
BolC5t34512H Brassica oleracea HOM05D002160 ORTHO05D002012 3.3e-07 58.2 84 57.1
BraA05t22740Z Brassica rapa HOM05D002160 ORTHO05D002012 3.3e-07 58.2 82 57.3
CARHR083780 Cardamine hirsuta HOM05D002160 ORTHO05D002012 3.3e-07 58.2 82 57.3
ECA247G1660 Erigeron canadensis HOM05D002160 ORTHO05D002012 3.3e-07 58.2 80 56.2
Potri.009G030800 Populus trichocarpa HOM05D002160 ORTHO05D002012 3.3e-07 58.2 80 60.0
CARHR211040 Cardamine hirsuta HOM05D002160 ORTHO05D002012 4.4e-07 57.8 79 58.2
AL3G20560 Arabidopsis lyrata HOM05D002160 ORTHO05D002012 5.7e-07 57.4 82 57.3
Thhalv10022195m.g Eutrema salsugineum HOM05D002160 ORTHO05D002012 5.7e-07 57.4 82 56.1
Gohir.A13G224300 Gossypium hirsutum HOM05D002160 ORTHO05D002012 5.7e-07 57.4 50 64.0
Gohir.D13G229100 Gossypium hirsutum HOM05D002160 ORTHO05D002012 5.7e-07 57.4 50 64.0
Gorai.013G260000 Gossypium raimondii HOM05D002160 ORTHO05D002012 5.7e-07 57.4 50 64.0
Oeu007792.1 Olea europaea HOM05D002160 ORTHO05D002012 5.7e-07 57.4 80 52.5
Rhsim05G0192600 Rhododendron simsii HOM05D002160 ORTHO05D002012 5.7e-07 57.4 80 58.8
TAR633G1907 Trochodendron aralioides HOM05D002160 ORTHO05D002012 5.7e-07 57.4 80 56.2
arahy.Tifrunner.gnm1.ann1.EU8JQM Arachis hypogaea HOM05D002160 ORTHO05D002012 7.4e-07 57.0 81 55.6
arahy.Tifrunner.gnm1.ann1.FFQQ4A Arachis hypogaea HOM05D002160 ORTHO05D002012 7.4e-07 57.0 81 55.6
Cpa.g.sc228.19 Carica papaya HOM05D002160 ORTHO05D002012 7.4e-07 57.0 82 56.1
Oeu036147.1 Olea europaea HOM05D002160 ORTHO05D002012 7.4e-07 57.0 81 58.0
BcaC09g48025 Brassica carinata HOM05D002160 ORTHO05D002012 9.7e-07 56.6 83 56.6
BraA01t04299Z Brassica rapa HOM05D002269 ORTHO05D002421 9.7e-07 56.6 82 57.3
Cpa.g.sc81.153 Carica papaya HOM05D002160 ORTHO05D002012 9.7e-07 56.6 60 51.7
MBI14_g20107_MAGBIO Magnolia biondii HOM05D002160 ORTHO05D002012 9.7e-07 56.6 81 58.0
Actinidia05312 Actinidia chinensis HOM05D002160 ORTHO05D002012 1.3e-06 56.2 80 57.5
Cc06_g02650 Coffea canephora HOM05D002160 ORTHO05D002012 1.3e-06 56.2 80 56.2
Gorai.002G257700 Gossypium raimondii HOM05D002160 ORTHO05D002012 1.3e-06 56.2 80 55.0
Aa31LG1G22420 Aethionema arabicum HOM05D002160 ORTHO05D002012 1.7e-06 55.8 82 54.9
BcaB03g11601 Brassica carinata HOM05D002160 ORTHO05D002012 1.7e-06 55.8 83 47.0
Os12g0568200 Oryza sativa ssp. japonica HOM05D002160 ORTHO05D002012 1.7e-06 55.8 82 47.6
SEGI_13620 Sequoiadendron giganteum HOM05D002160 ORTHO05D002012 1.7e-06 55.8 80 55.0
Gohir.A01G222400 Gossypium hirsutum HOM05D002160 ORTHO05D002012 2.2e-06 55.5 80 55.0
Os12g0568500 Oryza sativa ssp. japonica HOM05D002160 ORTHO05D002012 2.2e-06 55.5 82 45.1
Sp3g07770 Schrenkiella parvula HOM05D002160 ORTHO05D002012 2.2e-06 55.5 82 56.1
Migut.L01944 Erythranthe guttata HOM05D002160 ORTHO05D002012 2.8e-06 55.1 81 56.8
ATR0559G129 Amborella trichopoda HOM05D002160 ORTHO05D002012 3.7e-06 54.7 81 54.3
SalBow3G1804 Salvia bowleyana HOM05D002160 ORTHO05D002012 4.8e-06 54.3 81 50.6
ECA236G3652 Erigeron canadensis HOM05D002160 ORTHO05D002012 6.3e-06 53.9 81 51.9
Gohir.D11G345700 Gossypium hirsutum HOM05D002160 ORTHO05D002012 6.3e-06 53.9 79 53.2
Lalb_Chr19g0125331 Lupinus albus HOM05D002160 ORTHO05D002012 6.3e-06 53.9 77 55.8
TWI79G1473 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 6.3e-06 53.9 79 58.2
CSS0020810 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 8.2e-06 53.5 66 59.1
Haze_11621 Corylus avellana HOM05D002160 ORTHO05D002012 8.2e-06 53.5 79 59.5
Lsat_1_v5_gn_8_73001 Lactuca sativa HOM05D002160 ORTHO05D002012 8.2e-06 53.5 61 49.2
SEGI_28885 Sequoiadendron giganteum HOM05D002160 ORTHO05D002012 8.2e-06 53.5 82 54.9


User provided reference genes

Program Settings