Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1104.7 Capsicum annuum HOM05D005286 ORTHO05D006348 1.5e-278 962.2 492 100.0
PGSC0003DMG400045338 Solanum tuberosum HOM05D005286 ORTHO05D006348 4.8e-224 781.2 495 81.0
Solyc12g088020.1 Solanum lycopersicum HOM05D005286 ORTHO05D006348 3.0e-218 761.9 495 78.0
Sopen12g030050 Solanum pennellii HOM05D005286 ORTHO05D006348 4.3e-217 758.1 495 78.2
Peaxi162Scf00151g00811 Petunia axillaris HOM05D005286 ORTHO05D006348 7.4e-209 730.7 528 72.5
Nitab4.5_0000954g0020 Nicotiana tabacum HOM05D005286 ORTHO05D006348 2.1e-195 686.0 490 72.2
GSVIVG01022340001 Vitis vinifera HOM05D005286 ORTHO05D006348 2.9e-181 639.0 477 66.9
Actinidia16523 Actinidia chinensis HOM05D005286 ORTHO05D006348 2.5e-180 636.0 500 66.8
Ciclev10000962m.g Citrus clementina HOM05D005286 ORTHO05D006348 3.2e-180 635.6 492 65.0
Thecc.01G137300 Theobroma cacao HOM05D005286 ORTHO05D006348 3.6e-179 632.1 491 66.2
MSTRG.23499 Avicennia marina HOM05D005286 ORTHO05D006348 3.9e-178 628.6 482 66.2
CSS0034769 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 8.8e-178 627.5 472 67.8
Rhsim08G0000400 Rhododendron simsii HOM05D005286 ORTHO05D006348 1.1e-177 627.1 470 67.4
CSS0004303 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 7.4e-177 624.4 472 67.6
Duzib147G1331 Durio zibethinus HOM05D005286 ORTHO05D006348 9.7e-177 624.0 508 63.8
CiPaw.03G118000 Carya illinoinensis HOM05D005286 ORTHO05D006348 3.7e-176 622.1 477 66.7
Oeu037874.1 Olea europaea HOM05D005286 ORTHO05D006348 4.8e-176 621.7 477 65.8
TAR625G0087 Trochodendron aralioides HOM05D005286 ORTHO05D006348 1.4e-175 620.2 481 65.7
Manes.12G159000 Manihot esculenta HOM05D005286 ORTHO05D006348 3.5e-174 615.5 472 65.3
vmacro18685 Vaccinium macrocarpon HOM05D005286 ORTHO05D006348 4.5e-174 615.1 495 64.2
TWI75G1712 Tripterygium wilfordii HOM05D005286 ORTHO05D006348 7.7e-174 614.4 492 64.2
CANSAT35G0194 Cannabis sativa HOM05D005286 ORTHO05D006348 1.7e-173 613.2 488 64.8
Prupe.4G274700 Prunus persica HOM05D005286 ORTHO05D006348 2.9e-173 612.5 490 63.9
Lj4A421T8 Lonicera japonica HOM05D005286 ORTHO05D006348 6.5e-173 611.3 483 64.8
Gohir.A12G085400 Gossypium hirsutum HOM05D005286 ORTHO05D006348 1.5e-172 610.1 491 64.0
Migut.H00797 Erythranthe guttata HOM05D005286 ORTHO05D006348 2.5e-172 609.4 468 66.2
Gohir.D12G083400 Gossypium hirsutum HOM05D005286 ORTHO05D006348 2.5e-172 609.4 491 64.0
MD15G1135000 Malus domestica HOM05D005286 ORTHO05D006348 3.2e-172 609.0 490 64.3
Duzib187G0999 Durio zibethinus HOM05D005286 ORTHO05D006348 5.5e-172 608.2 492 63.8
HanXRQChr01g0017141 Helianthus annuus HOM05D005286 ORTHO05D006348 5.5e-172 608.2 472 64.4
Sed0025698 Sechium edule HOM05D005286 ORTHO05D006348 7.2e-172 607.8 478 65.5
QL10p041275 Quercus lobata HOM05D005286 ORTHO05D006348 1.2e-171 607.1 472 65.7
ClCG04G002290 Citrullus lanatus HOM05D005286 ORTHO05D006348 2.1e-171 606.3 495 64.6
Cfa021278 Carpinus fangiana HOM05D005286 ORTHO05D006348 1.8e-170 603.2 488 63.5
SGA_v2.0_scaffold189G40378 Striga asiatica HOM05D005286 ORTHO05D006348 3.0e-170 602.4 475 64.6
Lsat_1_v5_gn_1_78000 Lactuca sativa HOM05D005286 ORTHO05D006348 8.8e-170 600.9 488 62.9
FAN23G2334 Fragaria x ananassa HOM05D005286 ORTHO05D006348 1.2e-169 600.5 473 63.6
FvH4_1g24860 Fragaria vesca HOM05D005286 ORTHO05D006348 1.5e-169 600.1 473 63.6
FAN19G2916 Fragaria x ananassa HOM05D005286 ORTHO05D006348 1.5e-169 600.1 473 63.6
Atru.chr4.988 Acer truncatum HOM05D005286 ORTHO05D006348 2.0e-169 599.7 487 62.8
Ah.06g191030 Amaranthus hybridus HOM05D005286 ORTHO05D006348 2.6e-169 599.4 472 63.1
Aqoxy5G02419 Aquilegia oxysepala HOM05D005286 ORTHO05D006348 5.7e-169 598.2 479 63.9
ECA248G0233 Erigeron canadensis HOM05D005286 ORTHO05D006348 9.7e-169 597.4 497 63.0
Gorai.008G094500 Gossypium raimondii HOM05D005286 ORTHO05D006348 1.3e-168 597.0 505 61.8
Potri.007G101600 Populus trichocarpa HOM05D005286 ORTHO05D006348 1.7e-168 596.7 481 63.2
MELO3C008897.2 Cucumis melo HOM05D005286 ORTHO05D006348 3.7e-168 595.5 494 63.0
FAN28G1250 Fragaria x ananassa HOM05D005286 ORTHO05D006348 3.7e-168 595.5 473 63.4
RcHm_v2.0_Chr2g0122521 Rosa chinensis HOM05D005286 ORTHO05D006348 3.7e-168 595.5 490 61.8
CsaV3_4G030380 Cucumis sativus L. HOM05D005286 ORTHO05D006348 1.1e-167 594.0 494 63.0
Sabra07G0083800 Salix brachista HOM05D005286 ORTHO05D006348 1.4e-167 593.6 483 63.4
CARHR277830 Cardamine hirsuta HOM05D005286 ORTHO05D006348 1.8e-167 593.2 471 64.1
Sc09g0002230 Simmondsia chinensis HOM05D005286 ORTHO05D006348 3.1e-167 592.4 467 63.8
THA.LOC104819345 Tarenaya hassleriana HOM05D005286 ORTHO05D006348 3.1e-167 592.4 463 63.7
PGR119G0364 Punica granatum HOM05D005286 ORTHO05D006348 4.1e-167 592.0 503 60.8
FAN26G1990 Fragaria x ananassa HOM05D005286 ORTHO05D006348 9.1e-167 590.9 473 63.0
VMungo1309G1016 Vigna mungo HOM05D005286 ORTHO05D006348 2.0e-166 589.7 483 62.3
Cc07_g21020 Coffea canephora HOM05D005286 ORTHO05D006348 2.7e-166 589.3 492 62.4
AT5G63910 Arabidopsis thaliana HOM05D005286 ORTHO05D006348 4.5e-166 588.6 469 62.7
AL8G41150 Arabidopsis lyrata HOM05D005286 ORTHO05D006348 5.9e-166 588.2 471 62.4
Lj1g0003788 Lotus japonicus HOM05D003519 ORTHO05D004443 7.7e-166 587.8 498 61.4
EL10Ac4g09623 Beta vulgaris HOM05D005286 ORTHO05D006348 1.3e-165 587.0 521 58.5
Hma1.2p1_3117F.1_g332810 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 1.7e-165 586.6 510 60.4
A06p30530 Brassica napus HOM05D005286 ORTHO05D006348 3.8e-165 585.5 468 63.2
BraA06t26002Z Brassica rapa HOM05D005286 ORTHO05D006348 3.8e-165 585.5 468 63.2
arahy.Tifrunner.gnm1.ann1.7K8RK5 Arachis hypogaea HOM05D005286 ORTHO05D006348 5.0e-165 585.1 483 61.9
Glyma.06G155750 Glycine max HOM05D005286 ORTHO05D006348 5.0e-165 585.1 479 62.2
Aa31LG1G17980 Aethionema arabicum HOM05D005286 ORTHO05D006348 6.5e-165 584.7 441 65.8
Nn1g08960 Nelumbo nucifera HOM05D005286 ORTHO05D006348 8.5e-165 584.3 467 64.2
BcaB02g09762 Brassica carinata HOM05D005286 ORTHO05D006348 1.5e-164 583.6 492 61.8
Lalb_Chr23g0272691 Lupinus albus HOM05D005286 ORTHO05D006348 1.5e-164 583.6 464 64.4
Carub.0008s2471 Capsella rubella HOM05D005286 ORTHO05D006348 1.9e-164 583.2 493 60.2
Sp2g26980 Schrenkiella parvula HOM05D005286 ORTHO05D006348 3.2e-164 582.4 492 59.6
Hund21799 Selenicereus undatus HOM05D005286 ORTHO05D006348 4.2e-164 582.0 492 60.2
Ca_16981_v3 Cicer arietinum L. HOM05D005286 ORTHO05D006348 1.6e-163 580.1 496 60.5
arahy.Tifrunner.gnm1.ann1.ZN9YLD Arachis hypogaea HOM05D005286 ORTHO05D006348 2.7e-163 579.3 481 61.3
Nitab4.5_0000432g0040 Nicotiana tabacum HOM05D005286 ORTHO05D006348 6.1e-163 578.2 489 64.4
PSO170G0528 Papaver somniferum HOM05D005286 ORTHO05D006348 8.0e-163 577.8 492 60.4
Medtr3g096675 Medicago truncatula HOM05D005286 ORTHO05D006348 1.4e-162 577.0 501 60.1
Phvul.009G154600 Phaseolus vulgaris HOM05D005286 ORTHO05D006348 1.8e-162 576.6 478 62.1
Potri.007G101700 Populus trichocarpa HOM05D005286 ORTHO05D006348 4.0e-162 575.5 478 60.7
C03p62500 Brassica napus HOM05D005286 ORTHO05D006348 5.2e-162 575.1 492 60.2
BolC3t18507H Brassica oleracea HOM05D005286 ORTHO05D006348 5.2e-162 575.1 492 60.2
BcaC01g02644 Brassica carinata HOM05D005286 ORTHO05D006348 2.6e-161 572.8 472 62.1
TPR.G33580 Trifolium pratense HOM05D005286 ORTHO05D006348 2.6e-161 572.8 488 61.1
THA.LOC104818420 Tarenaya hassleriana HOM05D005286 ORTHO05D006348 2.4e-159 566.2 492 60.4
CSS0028284 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 1.6e-158 563.5 423 66.0
Thhalv10004131m.g Eutrema salsugineum HOM05D005286 ORTHO05D006348 3.7e-152 542.3 494 58.3
ATR0138G018 Amborella trichopoda HOM05D005286 ORTHO05D006348 1.3e-149 533.9 467 61.2
AUR62006858 Chenopodium quinoa HOM05D005286 ORTHO05D006348 6.6e-149 531.6 425 62.1
AUR62000514 Chenopodium quinoa HOM05D005286 ORTHO05D006348 7.3e-148 528.1 425 61.2
Eucgr.I00123 Eucalyptus grandis HOM05D005286 ORTHO05D006348 1.6e-147 526.9 532 54.3
HPP92_011629 Vanilla planifolia HOM05D005286 ORTHO05D006348 2.8e-147 526.2 478 58.6
MBI06_g35210_MAGBIO Magnolia biondii HOM05D005286 ORTHO05D006348 6.4e-144 515.0 561 51.0
CSS0025452 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 1.5e-140 503.8 494 55.5
COL.COLO4_35813 Corchorus olitorius HOM05D005286 ORTHO05D006348 2.1e-139 500.0 491 55.0
Nn5g28436 Nelumbo nucifera HOM05D005286 ORTHO05D006348 3.1e-138 496.1 488 54.9
Zm00001eb434510 Zea mays HOM05D005286 ORTHO05D006348 6.8e-138 495.0 497 53.5
Hund07236 Selenicereus undatus HOM05D005286 ORTHO05D006348 1.1e-135 487.6 407 61.4
Sabra07G0083900 Salix brachista HOM05D005286 ORTHO05D006348 1.9e-135 486.9 386 62.4
Gohir.D12G083401 Gossypium hirsutum HOM05D005286 ORTHO05D006348 4.0e-130 469.2 387 62.8
DCAR_019994 Daucus carota HOM05D005286 ORTHO05D006348 7.5e-129 464.9 483 53.2
SMO119G0327 Selaginella moellendorffii HOM05D005286 ORTHO05D006348 7.8e-118 428.3 476 48.5
Mapoly0032s0088 Marchantia polymorpha HOM05D005286 ORTHO05D006348 8.7e-117 424.9 459 49.5
Psat5g059680 Pisum sativum HOM05D005286 ORTHO05D006348 2.8e-107 393.3 352 59.4
QL10p041264 Quercus lobata HOM05D005286 ORTHO05D006348 2.8e-99 366.7 267 67.0
Hma1.2p1_0310F.1_g121020 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 1.1e-95 354.8 231 73.2
SEGI_22884 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 8.2e-91 338.6 260 65.0
SEGI_35897 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 8.2e-91 338.6 260 65.0
Cpa.g.sc37.7 Carica papaya HOM05D005286 ORTHO05D006348 2.7e-86 323.6 277 60.6
Haze_10873 Corylus avellana HOM05D005286 ORTHO05D006348 1.5e-84 317.8 294 57.8
Dinv15529 Davidia involucrata HOM05D005286 ORTHO05D006348 4.1e-82 309.7 220 67.7
Dinv24561 Davidia involucrata HOM05D005286 ORTHO05D006348 5.3e-82 309.3 200 72.5
CBR_g8546 Chara braunii HOM05D005286 ORTHO05D006348 4.6e-78 296.2 304 50.0
AagrBONN_evm.TU.Sc2ySwM_362.2029 Anthoceros agrestis HOM05D005286 ORTHO05D006348 1.4e-77 294.7 322 49.4
Pp3c3_10560 Physcomitrium patens HOM05D005286 ORTHO05D006348 2.9e-72 276.9 344 44.8
unitig_748.g8003 Utricularia gibba HOM05D005286 ORTHO05D006348 5.1e-69 266.2 240 56.7
unitig_748.g8002 Utricularia gibba HOM05D005286 ORTHO05D006348 6.7e-69 265.8 201 64.7
DCAR_000205 Daucus carota HOM05D005286 ORTHO05D006348 1.7e-67 261.2 186 65.1
CSS0038762 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 3.5e-65 253.4 217 62.2
Oeu039334.1 Olea europaea HOM05D005286 ORTHO05D006348 7.7e-65 252.3 178 69.1
Dinv24565 Davidia involucrata HOM05D005286 ORTHO05D006348 2.1e-62 244.2 218 59.2
QL10p041267 Quercus lobata HOM05D005286 ORTHO05D006348 8.0e-62 242.3 215 58.6
CDE08G1426 Ceratophyllum demersum HOM05D005286 ORTHO05D006348 8.8e-61 238.8 244 52.0
CSS0007937 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 2.8e-59 233.8 202 59.9
CDE08G1664 Ceratophyllum demersum HOM05D005286 ORTHO05D006348 3.4e-52 210.3 163 60.1
Cpa.g.sc37.6 Carica papaya HOM05D005286 ORTHO05D006348 9.8e-52 208.8 156 64.1
RcHm_v2.0_Chr6g0261231 Rosa chinensis HOM05D005286 ORTHO05D006348 1.3e-48 198.4 170 57.6
Nitab4.5_0004530g0050 Nicotiana tabacum HOM05D005286 ORTHO05D006348 2.3e-45 187.6 166 61.4
CBR_g864 Chara braunii HOM05D005286 ORTHO05D006348 4.0e-37 160.2 426 27.7
Nitab4.5_0008592g0010 Nicotiana tabacum HOM05D005286 ORTHO05D006348 7.8e-33 146.0 141 60.3
PRCOL_00003919 Prasinoderma coloniale HOM05D005286 ORTHO05D006348 1.5e-28 131.7 515 28.9
CSS0025385 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 2.2e-27 127.9 179 44.1
SEGI_37681 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 8.6e-24 115.9 165 40.6
Nitab4.5_0008217g0010 Nicotiana tabacum HOM05D005286 ORTHO05D006348 4.3e-23 113.6 100 56.0
Os04g0692800 Oryza sativa ssp. japonica HOM05D005286 ORTHO05D006348 2.6e-20 104.4 141 44.0
Glyma.04G210301 Glycine max HOM05D005286 ORTHO05D006348 2.2e-19 101.3 55 85.5
Nitab4.5_0005379g0060 Nicotiana tabacum HOM05D005286 ORTHO05D006348 8.1e-14 82.8 118 49.2
Cfa022134 Carpinus fangiana HOM05D005286 ORTHO05D006348 1.8e-13 81.6 267 30.3
Nitab4.5_0002142g0070 Nicotiana tabacum HOM05D005286 ORTHO05D006348 2.3e-13 81.3 89 50.6
Hma1.2p1_0310F.1_g121040 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 1.2e-12 79.0 63 61.9
Oeu039336.1 Olea europaea HOM05D001574 ORTHO05D006348 5.8e-12 76.6 57 56.1
Cre10.g425200 Chlamydomonas reinhardtii HOM05D005286 ORTHO05D006348 6.4e-11 73.2 158 32.9
SalBow2G0549 Salvia bowleyana HOM05D002652 ORTHO05D002739 1.6e-09 68.6 74 56.8
CBR_g8549 Chara braunii HOM05D005286 ORTHO05D006348 2.7e-09 67.8 165 33.3
Peaxi162Scf00151g00815 Petunia axillaris HOM05D005286 ORTHO05D006348 1.3e-08 65.5 76 50.0
Peaxi162Scf00151g00817 Petunia axillaris HOM05D005286 ORTHO05D006348 9.6e-07 59.3 47 66.0


User provided reference genes

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