Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G11.21 Capsicum annuum HOM05D003733 ORTHO05D004035 5.2e-219 764.6 555 100.0
Nitab4.5_0000465g0130 Nicotiana tabacum HOM05D003733 ORTHO05D004035 3.7e-156 555.8 513 74.9
Nitab4.5_0014307g0010 Nicotiana tabacum HOM05D003733 ORTHO05D004035 8.2e-156 554.7 519 73.8
Solyc03g043760.4 Solanum lycopersicum HOM05D003733 ORTHO05D004035 4.3e-149 532.3 582 79.9
Sopen03g007620 Solanum pennellii HOM05D003733 ORTHO05D004035 2.4e-147 526.6 582 79.6
Peaxi162Scf00118g00109 Petunia axillaris HOM05D003733 ORTHO05D004035 1.8e-139 500.4 536 72.9
PGSC0003DMG400016686 Solanum tuberosum HOM05D003733 ORTHO05D004035 1.6e-130 470.7 377 78.0
Nitab4.5_0000396g0250 Nicotiana tabacum HOM05D003733 ORTHO05D004035 2.5e-104 383.6 516 52.5
CAN.G1061.16 Capsicum annuum HOM05D003733 ORTHO05D004035 1.0e-102 378.3 564 51.4
PGSC0003DMG400030618 Solanum tuberosum HOM05D003733 ORTHO05D004035 1.7e-100 370.9 563 51.7
Sopen02g036340 Solanum pennellii HOM05D003733 ORTHO05D004035 1.9e-83 314.3 562 46.4
Nitab4.5_0000093g0190 Nicotiana tabacum HOM05D003733 ORTHO05D004035 4.3e-80 303.1 495 46.9
GSVIVG01003708001 Vitis vinifera HOM05D003733 ORTHO05D004035 1.7e-68 264.6 528 41.1
Actinidia36390 Actinidia chinensis HOM05D003733 ORTHO05D004035 5.1e-65 253.1 567 43.0
CSS0008611 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 5.6e-64 249.6 582 39.0
Dinv26992 Davidia involucrata HOM05D003733 ORTHO05D004035 2.1e-63 247.7 564 41.3
Cfa006814 Carpinus fangiana HOM05D003733 ORTHO05D004035 8.1e-63 245.7 555 39.1
QL06p037705 Quercus lobata HOM05D003733 ORTHO05D004035 3.1e-62 243.8 498 37.6
Lj4A174T33 Lonicera japonica HOM05D003733 ORTHO05D004035 1.2e-61 241.9 506 37.7
Actinidia11935 Actinidia chinensis HOM05D003733 ORTHO05D004035 1.7e-60 238.0 569 42.2
Cc07_g07720 Coffea canephora HOM05D003733 ORTHO05D004035 6.4e-60 236.1 566 36.9
Solyc02g091730.3 Solanum lycopersicum HOM05D003733 ORTHO05D004035 1.1e-59 235.3 349 50.7
TAR376G0930 Trochodendron aralioides HOM05D003733 ORTHO05D004035 3.0e-57 227.3 521 38.4
SalBow7G4044 Salvia bowleyana HOM05D003733 ORTHO05D004035 4.8e-55 219.9 580 36.9
vmacro07413 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 1.1e-54 218.8 525 35.8
Manes.12G120000 Manihot esculenta HOM05D003733 ORTHO05D004035 1.8e-54 218.0 333 45.6
CiPaw.12G004300 Carya illinoinensis HOM05D003733 ORTHO05D004035 9.0e-54 215.7 566 38.0
TWI53G0148 Tripterygium wilfordii HOM05D003733 ORTHO05D004035 2.0e-53 214.5 558 40.0
MSTRG.3501 Avicennia marina HOM05D003733 ORTHO05D004035 4.5e-53 213.4 589 35.8
Rhsim10G0187300 Rhododendron simsii HOM05D006560 ORTHO05D008164 1.3e-52 211.8 547 36.6
vmacro20437 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 6.4e-52 209.5 524 34.9
TAR381G0096 Trochodendron aralioides HOM05D003733 ORTHO05D004035 1.1e-51 208.8 531 37.3
Migut.L00442 Erythranthe guttata HOM05D003733 ORTHO05D004035 1.4e-51 208.4 575 35.1
Prupe.6G211200 Prunus persica HOM05D003733 ORTHO05D004035 1.2e-50 205.3 582 34.7
Nn1g05776 Nelumbo nucifera HOM05D003733 ORTHO05D004035 7.4e-48 196.1 496 33.9
Oeu054739.1 Olea europaea HOM05D003733 ORTHO05D004035 1.8e-46 191.4 482 35.1
RcHm_v2.0_Chr2g0109681 Rosa chinensis HOM05D003733 ORTHO05D004035 1.8e-46 191.4 552 34.4
Potri.007G009700 Populus trichocarpa HOM05D003733 ORTHO05D004035 3.1e-46 190.7 329 42.2
Potri.005G148700 Populus trichocarpa HOM05D003733 ORTHO05D004035 4.0e-46 190.3 278 44.6
Medtr5g030610 Medicago truncatula HOM05D003733 ORTHO05D004035 6.9e-46 189.5 531 34.8
Medtr5g430710 Medicago truncatula HOM05D003733 ORTHO05D008786 6.9e-46 189.5 531 34.8
Haze_03945 Corylus avellana HOM05D003733 ORTHO05D004035 1.5e-45 188.3 334 44.0
ClCG01G018090 Citrullus lanatus HOM05D003733 ORTHO05D008786 5.8e-45 186.4 516 33.9
Manes.13G105200 Manihot esculenta HOM05D003733 ORTHO05D004035 8.4e-44 182.6 379 41.7
Glyma.01G097200 Glycine max HOM05D003733 ORTHO05D004035 5.5e-43 179.9 357 39.5
TPR.G1045 Trifolium pratense HOM05D003733 ORTHO05D008786 9.3e-43 179.1 503 34.2
CSS0020555 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 1.6e-42 178.3 454 35.9
PGR102G0988 Punica granatum HOM05D003733 ORTHO05D004035 1.6e-42 178.3 632 33.9
Thecc.01G082000 Theobroma cacao HOM05D003733 ORTHO05D004035 1.6e-42 178.3 529 35.7
Lj4g0014652 Lotus japonicus HOM05D003733 ORTHO05D004035 2.1e-42 177.9 398 39.2
DCAR_025843 Daucus carota HOM05D003733 ORTHO05D004035 1.3e-41 175.3 568 34.7
Aqoxy4G03244 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 5.1e-41 173.3 496 32.7
Glyma.08G272800 Glycine max HOM05D003733 ORTHO05D004035 6.7e-41 172.9 552 33.7
SGA_v2.0_scaffold13G06400 Striga asiatica HOM05D003733 ORTHO05D004035 8.7e-41 172.6 592 32.1
Atru.chr3.1125_Atru.chr3.1126 Acer truncatum HOM05D003733 ORTHO05D004035 4.3e-40 170.2 525 36.2
Atru.chr3.1134_Atru.chr3.1135 Acer truncatum HOM05D003733 ORTHO05D004035 4.3e-40 170.2 525 36.2
Psat2g135720 Pisum sativum HOM05D003733 ORTHO05D004035 5.7e-40 169.9 488 31.4
Sabra07G0007400 Salix brachista HOM05D003733 ORTHO05D008786 5.7e-40 169.9 484 33.1
VMungo1215G3108 Vigna mungo HOM05D003733 ORTHO05D004035 7.4e-40 169.5 569 33.7
Lj3g0005458 Lotus japonicus HOM05D003733 ORTHO05D004035 9.7e-40 169.1 321 42.1
CiPaw.12G004100 Carya illinoinensis HOM05D003733 ORTHO05D004035 1.6e-39 168.3 347 44.1
Ca_06073_v3 Cicer arietinum L. HOM05D003733 ORTHO05D004035 2.8e-39 167.5 348 39.4
HanXRQChr17g0561681 Helianthus annuus HOM05D003733 ORTHO05D004035 6.3e-39 166.4 551 35.0
Phvul.003G285300 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 6.3e-39 166.4 323 44.0
CSS0006986 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 1.1e-38 165.6 445 34.6
TAR625G0952 Trochodendron aralioides HOM05D003733 ORTHO05D004035 9.0e-38 162.5 529 34.2
SalBow5G1957 Salvia bowleyana HOM05D003733 ORTHO05D004035 1.5e-37 161.8 567 32.3
HanXRQChr12g0366081 Helianthus annuus HOM05D003733 ORTHO05D004035 2.6e-37 161.0 529 34.2
Oeu054741.2 Olea europaea HOM05D003733 ORTHO05D004035 2.6e-37 161.0 490 33.5
arahy.Tifrunner.gnm1.ann1.DCX0GA Arachis hypogaea HOM05D003733 ORTHO05D004035 5.9e-37 159.8 366 37.2
arahy.Tifrunner.gnm1.ann1.KS8TVJ Arachis hypogaea HOM05D003733 ORTHO05D004035 5.9e-37 159.8 366 37.2
Ciclev10025536m.g Citrus clementina HOM05D003733 ORTHO05D004035 5.9e-37 159.8 587 32.9
Lsat_1_v5_gn_8_34760 Lactuca sativa HOM05D003733 ORTHO05D004035 5.9e-37 159.8 324 44.4
FAN23G1272 Fragaria x ananassa HOM05D003733 ORTHO05D004035 1.0e-36 159.1 598 29.3
MD16G1281700 Malus domestica HOM05D003733 ORTHO05D004035 1.0e-36 159.1 581 31.7
MD01G1046400 Malus domestica HOM05D003733 ORTHO05D004035 1.9e-35 154.8 591 31.5
Phvul.002G139100 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 2.5e-35 154.5 605 32.4
Lalb_Chr16g0381411 Lupinus albus HOM05D003733 ORTHO05D004035 5.5e-35 153.3 547 32.7
unitig_0.g2606 Utricularia gibba HOM05D003733 ORTHO05D004035 2.7e-34 151.0 564 33.0
VMungo1309G1560 Vigna mungo HOM05D003733 ORTHO05D004035 2.7e-34 151.0 283 40.3
VMungo0251G1204 Vigna mungo HOM05D003733 ORTHO05D004035 6.1e-34 149.8 279 39.8
Duzib264G0286 Durio zibethinus HOM05D003733 ORTHO05D004035 1.0e-33 149.1 381 36.0
ECA233G0477 Erigeron canadensis HOM05D003733 ORTHO05D004035 3.0e-33 147.5 274 46.0
MELO3C007686.2 Cucumis melo HOM05D003733 ORTHO05D004035 3.9e-33 147.1 525 31.0
Duzib147G1539 Durio zibethinus HOM05D003733 ORTHO05D004035 6.7e-33 146.4 336 35.4
arahy.Tifrunner.gnm1.ann1.24SHUP Arachis hypogaea HOM05D003733 ORTHO05D004035 2.0e-32 144.8 480 30.6
COL.COLO4_11664 Corchorus olitorius HOM05D000513 ORTHO05D008786 3.3e-32 144.1 271 46.5
Sed0009716 Sechium edule HOM05D003733 ORTHO05D004035 3.3e-32 144.1 546 31.0
Lj2g0016248 Lotus japonicus HOM05D003733 ORTHO05D004035 1.3e-31 142.1 541 30.9
CDE10G0903 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 1.7e-31 141.7 521 35.5
PSO761G0336 Papaver somniferum HOM05D003733 ORTHO05D004035 3.7e-31 140.6 491 29.3
PSO210G1228 Papaver somniferum HOM05D003733 ORTHO05D004035 8.2e-31 139.4 503 29.4
Sc03g0000640 Simmondsia chinensis HOM05D003733 ORTHO05D004035 1.4e-30 138.7 579 30.7
arahy.Tifrunner.gnm1.ann1.EGH0HL Arachis hypogaea HOM05D003733 ORTHO05D004035 4.1e-30 137.1 480 30.2
CAN.G630.65 Capsicum annuum HOM05D003733 ORTHO05D004035 4.1e-30 137.1 509 32.2
CANSAT01G3253 Cannabis sativa HOM05D003733 ORTHO05D004035 6.9e-30 136.3 523 36.9
CDE10G0649 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 7.7e-29 132.9 519 38.5
Gohir.D03G033400 Gossypium hirsutum HOM05D003733 ORTHO05D004035 2.2e-28 131.3 275 44.7
Gorai.003G035000 Gossypium raimondii HOM05D003733 ORTHO05D004035 2.2e-28 131.3 229 45.0
Sed0014908 Sechium edule HOM05D003733 ORTHO05D004035 8.5e-28 129.4 493 29.6
CsaV3_6G044630 Cucumis sativus L. HOM05D003733 ORTHO05D004035 2.5e-27 127.9 503 30.2
ATR0584G133 Amborella trichopoda HOM05D003733 ORTHO05D004035 4.2e-27 127.1 523 29.3
A09p57340 Brassica napus HOM05D003733 ORTHO05D004035 4.2e-27 127.1 550 28.5
MD02G1269400 Malus domestica HOM05D003733 ORTHO05D004035 4.2e-27 127.1 555 29.9
Eucgr.D00182 Eucalyptus grandis HOM05D003733 ORTHO05D004035 5.5e-27 126.7 171 46.8
SGA_v2.0_scaffold174G39242 Striga asiatica HOM05D003733 ORTHO05D004035 7.2e-27 126.3 560 27.9
THA.LOC104804189 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 1.6e-26 125.2 537 30.9
Gohir.A02G147000 Gossypium hirsutum HOM05D003733 ORTHO05D004035 7.9e-26 122.9 529 33.5
AT2G22720 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 1.0e-25 122.5 184 46.2
ATR0706G065 Amborella trichopoda HOM05D003733 ORTHO05D004035 1.4e-25 122.1 513 27.9
BcaB06g27818 Brassica carinata HOM05D003733 ORTHO05D004035 1.8e-25 121.7 528 28.2
THA.LOC104807653 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 1.8e-25 121.7 193 45.1
Carub.0004s0185 Capsella rubella HOM05D003733 ORTHO05D004035 6.7e-25 119.8 173 47.4
Lalb_Chr09g0325721 Lupinus albus HOM05D003733 ORTHO05D004035 1.1e-24 119.0 390 31.8
C08p40430 Brassica napus HOM05D003733 ORTHO05D004035 2.6e-24 117.9 531 28.6
BolC8t51612H Brassica oleracea HOM05D003733 ORTHO05D004035 2.6e-24 117.9 531 28.6
Sp4g01710 Schrenkiella parvula HOM05D003733 ORTHO05D004035 5.7e-24 116.7 518 28.4
FAN19G3013 Fragaria x ananassa HOM05D003733 ORTHO05D004035 1.7e-23 115.2 160 47.5
PSO782G1301 Papaver somniferum HOM05D003733 ORTHO05D004035 3.7e-23 114.0 298 33.2
PSO832G4530 Papaver somniferum HOM05D003733 ORTHO05D004035 4.8e-23 113.6 498 29.5
FvH4_1g18820 Fragaria vesca HOM05D003733 ORTHO05D004035 6.3e-23 113.2 192 42.2
MBI16_g20893_MAGBIO Magnolia biondii HOM05D003733 ORTHO05D004035 6.3e-23 113.2 165 44.2
AL4G12240 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 1.4e-22 112.1 553 30.7
BraA09t41127Z Brassica rapa HOM05D003733 ORTHO05D004035 7.0e-22 109.8 539 34.1
A04p17190 Brassica napus HOM05D002219 ORTHO05D002713 9.1e-22 109.4 239 38.9
EL10As13g24049 Beta vulgaris HOM05D003733 ORTHO05D004035 5.9e-21 106.7 331 36.3
Hund23622 Selenicereus undatus HOM05D003733 ORTHO05D004035 2.9e-20 104.4 246 37.4
CARHR114000 Cardamine hirsuta HOM05D003733 ORTHO05D004035 6.5e-20 103.2 534 32.8
HPP92_024603 Vanilla planifolia HOM05D003733 ORTHO05D004035 3.2e-19 100.9 512 27.1
SEGI_33741 Sequoiadendron giganteum HOM05D003733 ORTHO05D004035 4.7e-18 97.1 530 28.9
Cpa.g.sc129.28 Carica papaya HOM05D003733 ORTHO05D004035 6.1e-18 96.7 320 29.7
Sc16g0000790 Simmondsia chinensis HOM05D003733 ORTHO05D004035 6.1e-18 96.7 188 47.3
unitig_88.g27718 Utricularia gibba HOM05D003733 ORTHO05D004035 6.1e-18 96.7 562 28.5
Aa31LG7G14100 Aethionema arabicum HOM05D003733 ORTHO05D004035 3.0e-17 94.4 556 27.0
BraA04t17347Z Brassica rapa HOM05D003733 ORTHO05D004035 3.0e-17 94.4 530 30.0
MBI16_g41329_MAGBIO Magnolia biondii HOM05D003733 ORTHO05D004035 3.0e-17 94.4 460 27.8
AUR62027209 Chenopodium quinoa HOM05D003733 ORTHO05D004035 2.6e-16 91.3 487 29.8
Hma1.2p1_0723F.1_g208790 Hydrangea macrophylla HOM05D003733 ORTHO05D004035 3.3e-16 90.9 320 31.9
BolC4t26775H Brassica oleracea HOM05D003733 ORTHO05D004035 5.7e-16 90.1 527 29.2
SHI12093 Sapria himalayana HOM05D003733 ORTHO05D004035 7.4e-16 89.7 145 44.1
C04p52030 Brassica napus HOM05D002219 ORTHO05D002713 1.7e-15 88.6 520 30.2
Prupe.1G068500 Prunus persica HOM05D003733 ORTHO05D004035 3.7e-15 87.4 175 41.7
Thhalv10000080m.g Eutrema salsugineum HOM05D003733 ORTHO05D004035 4.8e-15 87.0 180 36.7
Prupe.2G308100 Prunus persica HOM05D003733 ORTHO05D004035 6.3e-15 86.7 203 37.4
AUR62003259 Chenopodium quinoa HOM05D003733 ORTHO05D004035 8.2e-15 86.3 492 28.7
A01p01170 Brassica napus HOM05D003733 ORTHO05D004035 1.1e-14 85.9 231 35.1
Os11g0296800 Oryza sativa ssp. japonica HOM05D003733 ORTHO05D004035 1.4e-14 85.5 563 33.9
C01p01330 Brassica napus HOM05D003733 ORTHO05D004035 4.1e-14 84.0 133 45.1
Oeu012608.1 Olea europaea HOM05D003733 ORTHO05D004035 2.0e-13 81.6 90 58.9
CARHR246250 Cardamine hirsuta HOM05D003733 ORTHO05D004035 4.5e-13 80.5 497 25.2
SEGI_29083 Sequoiadendron giganteum HOM05D003733 ORTHO05D004035 1.0e-12 79.3 526 36.3
BraA01t00115Z Brassica rapa HOM05D003733 ORTHO05D004035 3.8e-12 77.4 264 33.7
Zm00001eb429410 Zea mays HOM05D003733 ORTHO05D004035 3.8e-12 77.4 554 29.8
AT4G37860 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 5.0e-12 77.0 218 34.4
Aqoxy6G00872 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 1.1e-11 75.9 287 30.3
BolC1t00129H Brassica oleracea HOM05D003733 ORTHO05D004035 1.5e-11 75.5 133 42.9
Dinv36994 Davidia involucrata HOM05D003733 ORTHO05D004035 2.7e-10 71.2 138 41.3
AL7G12820 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 3.6e-10 70.9 201 33.8
COL.COLO4_36255 Corchorus olitorius HOM05D003733 ORTHO05D004035 1.8e-09 68.6 79 53.2
MD15G1405500 Malus domestica HOM05D005427 ORTHO05D006461 6.8e-09 66.6 147 50.3
BcaNung00967 Brassica carinata HOM05D003733 ORTHO05D004035 1.5e-08 65.5 228 33.8
Lalb_Chr05g0216131 Lupinus albus HOM05D001142 ORTHO05D003453 2.0e-08 65.1 278 29.1
Sp7g35500 Schrenkiella parvula HOM05D003733 ORTHO05D004035 2.6e-08 64.7 92 45.7
SGA_v2.0_scaffold55G19776 Striga asiatica HOM05D003733 ORTHO05D004035 2.6e-08 64.7 56 60.7
Potri.001G257300 Populus trichocarpa HOM05D003733 ORTHO05D004035 1.7e-07 62.0 163 33.7
Manes.06G161600 Manihot esculenta HOM05D003733 ORTHO05D004035 2.2e-07 61.6 185 33.0
Ah.03g142000 Amaranthus hybridus HOM05D000288 ORTHO05D000173 6.3e-07 60.1 83 45.8
Zm00001eb186830 Zea mays HOM05D003733 ORTHO05D004035 1.1e-06 59.3 238 28.6
Sc16g0000800 Simmondsia chinensis HOM05D003733 ORTHO05D004035 7.0e-06 56.6 80 42.5
Zm00001eb074340 Zea mays HOM05D003733 ORTHO05D004035 9.1e-06 56.2 49 59.2


User provided reference genes

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