Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G11.1 Capsicum annuum HOM05D006144 ORTHO05D006357 0.0e+00 2582.0 1325 100.0
PGSC0003DMG400019754 Solanum tuberosum HOM05D006144 ORTHO05D006357 0.0e+00 2140.9 1284 85.8
Nitab4.5_0000382g0030 Nicotiana tabacum HOM05D006144 ORTHO05D006357 0.0e+00 2118.6 1322 81.8
Nitab4.5_0001684g0030 Nicotiana tabacum HOM05D006144 ORTHO05D006357 0.0e+00 2111.6 1322 81.7
Solyc03g044620.4 Solanum lycopersicum HOM05D006144 ORTHO05D006357 0.0e+00 2078.9 1319 81.0
Sopen03g008900 Solanum pennellii HOM05D006144 ORTHO05D006357 0.0e+00 2059.6 1318 81.6
Peaxi162Scf00183g00711 Petunia axillaris HOM05D006144 ORTHO05D006357 0.0e+00 2020.4 1329 79.5
Actinidia36503 Actinidia chinensis HOM05D006144 ORTHO05D006357 0.0e+00 1187.9 1328 49.6
CSS0009151 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 0.0e+00 1186.4 1334 49.7
Cc07_g05860 Coffea canephora HOM05D006144 ORTHO05D006357 0.0e+00 1183.7 1332 49.8
CSS0011451 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 0.0e+00 1179.1 1327 49.4
Actinidia12060 Actinidia chinensis HOM05D006144 ORTHO05D006357 0.0e+00 1166.8 1328 48.6
Atru.chr3.396 Acer truncatum HOM05D006144 ORTHO05D006357 0.0e+00 1140.2 1325 47.2
Oeu003786.1 Olea europaea HOM05D006144 ORTHO05D006357 0.0e+00 1107.0 1232 49.9
Oeu049306.1 Olea europaea HOM05D006144 ORTHO05D006357 0.0e+00 1099.7 1280 48.4
QL06p042250 Quercus lobata HOM05D006144 ORTHO05D006357 0.0e+00 1091.6 1335 47.3
vmacro05326 Vaccinium macrocarpon HOM05D006144 ORTHO05D006357 0.0e+00 1083.2 1467 43.0
Haze_15426 Corylus avellana HOM05D006144 ORTHO05D006357 0.0e+00 1077.8 1336 46.1
CSS0044544 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 1.8e-311 1073.2 1245 48.4
Cfa003998 Carpinus fangiana HOM05D006144 ORTHO05D006357 1.8e-311 1072.8 1334 46.3
Ciclev10024721m.g Citrus clementina HOM05D006144 ORTHO05D006357 4.5e-311 1071.6 1330 45.4
Rhsim10G0119800 Rhododendron simsii HOM05D006144 ORTHO05D006357 2.1e-303 1046.2 1223 46.1
Potri.005G136600 Populus trichocarpa HOM05D006144 ORTHO05D006357 1.4e-302 1043.5 1337 44.4
Hma1.2p1_0200F.1_g086100 Hydrangea macrophylla HOM05D006144 ORTHO05D006357 2.0e-301 1039.6 1326 45.6
Potri.007G041300 Populus trichocarpa HOM05D006144 ORTHO05D006357 4.5e-301 1038.5 1344 44.6
Thecc.01G052700 Theobroma cacao HOM05D006144 ORTHO05D006357 1.3e-300 1036.9 1319 44.3
Prupe.7G136200 Prunus persica HOM05D006144 ORTHO05D006357 2.4e-299 1032.7 1328 45.2
Duzib147G1467 Durio zibethinus HOM05D006144 ORTHO05D006357 3.2e-299 1032.3 1324 44.7
MD02G1169100 Malus domestica HOM05D006144 ORTHO05D006357 2.7e-298 1029.2 1338 44.9
Dinv39873 Davidia involucrata HOM05D006144 ORTHO05D006357 6.0e-298 1028.1 1343 44.5
MD15G1281500 Malus domestica HOM05D006144 ORTHO05D006357 3.9e-297 1025.4 1335 44.1
Gohir.A11G046100 Gossypium hirsutum HOM05D006144 ORTHO05D006357 1.5e-293 1013.4 1328 43.3
Gorai.007G053500 Gossypium raimondii HOM05D006144 ORTHO05D006357 2.6e-293 1012.7 1334 43.9
Gohir.D11G049700 Gossypium hirsutum HOM05D006144 ORTHO05D006357 7.6e-293 1011.1 1334 43.8
MSTRG.2895 Avicennia marina HOM05D006144 ORTHO05D006357 1.3e-292 1010.4 1316 45.2
CiPaw.01G021400 Carya illinoinensis HOM05D006144 ORTHO05D006357 2.7e-290 1002.7 1320 44.0
COL.COLO4_22183 Corchorus olitorius HOM05D006144 ORTHO05D006357 2.3e-289 999.6 1312 43.2
FAN26G0177 Fragaria x ananassa HOM05D006144 ORTHO05D006357 3.7e-287 992.3 1337 44.6
Manes.12G100500 Manihot esculenta HOM05D006144 ORTHO05D006357 4.8e-287 991.9 1326 43.7
RcHm_v2.0_Chr2g0105021 Rosa chinensis HOM05D006144 ORTHO05D006357 8.4e-284 981.1 1295 44.9
Dinv29969 Davidia involucrata HOM05D006144 ORTHO05D006357 1.2e-282 977.2 1192 46.6
FAN19G3143 Fragaria x ananassa HOM05D006144 ORTHO05D006357 1.2e-282 977.2 1338 44.5
Nn1g05861 Nelumbo nucifera HOM05D006144 ORTHO05D006357 2.1e-282 976.5 1352 43.8
Migut.H00451 Erythranthe guttata HOM05D006144 ORTHO05D006357 2.7e-282 976.1 1318 43.9
FAN28G0789 Fragaria x ananassa HOM05D006144 ORTHO05D006357 6.0e-282 974.9 1286 44.6
FvH4_1g15710 Fragaria vesca HOM05D006144 ORTHO05D006357 3.0e-281 972.6 1338 44.3
FAN23G0857 Fragaria x ananassa HOM05D006144 ORTHO05D006357 8.7e-281 971.1 1350 43.3
CANSAT01G0270 Cannabis sativa HOM05D006144 ORTHO05D006357 1.5e-277 960.3 1326 42.5
Sabra07G0036900 Salix brachista HOM05D006144 ORTHO05D006357 1.5e-277 960.3 1303 42.9
TWI09G0039 Tripterygium wilfordii HOM05D006144 ORTHO05D006357 4.2e-275 952.2 1331 41.2
DCAR_025720 Daucus carota HOM05D006144 ORTHO05D006357 3.3e-272 942.6 1341 42.9
Nn5g30196 Nelumbo nucifera HOM05D006144 ORTHO05D006357 7.4e-272 941.4 1328 42.5
Glyma.11G057500 Glycine max HOM05D006144 ORTHO05D006357 2.4e-254 883.2 1314 42.5
Oeu004869.1 Olea europaea HOM05D006144 ORTHO05D006357 5.0e-252 875.5 1324 40.9
CsaV3_6G043130 Cucumis sativus L. HOM05D006144 ORTHO05D006357 1.2e-250 870.9 1320 40.9
ClCG01G016710 Citrullus lanatus HOM05D006144 ORTHO05D006357 3.7e-247 859.4 1279 41.8
Ca_24781_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 1.8e-246 857.1 1307 41.3
Glyma.01G184700 Glycine max HOM05D006144 ORTHO05D006357 1.2e-245 854.4 1312 41.6
Aqoxy6G01406 Aquilegia oxysepala HOM05D006144 ORTHO05D006357 1.5e-243 847.4 1291 39.5
Eucgr.H01999 Eucalyptus grandis HOM05D006144 ORTHO05D006357 1.6e-242 844.0 1278 40.3
TPR.G31101 Trifolium pratense HOM05D006144 ORTHO05D006357 4.7e-242 842.4 1325 41.3
Lj2g0024358 Lotus japonicus HOM05D006144 ORTHO05D006357 6.1e-242 842.0 1325 41.4
MELO3C007550.2 Cucumis melo HOM05D006144 ORTHO05D006357 1.5e-240 837.4 1228 41.9
VMungo1215G0092 Vigna mungo HOM05D006144 ORTHO05D006357 3.7e-239 832.8 1324 40.9
Phvul.002G020300 Phaseolus vulgaris HOM05D006144 ORTHO05D006357 1.8e-238 830.5 1309 40.3
PGR102G0121 Punica granatum HOM05D006144 ORTHO05D006357 9.1e-238 828.2 1267 40.6
Sed0018548 Sechium edule HOM05D006144 ORTHO05D006357 1.0e-236 824.7 1328 39.6
Lalb_Chr16g0388301 Lupinus albus HOM05D006144 ORTHO05D006357 6.8e-233 812.0 1335 40.2
Psat0s3889g0080 Pisum sativum HOM05D006144 ORTHO05D006357 2.6e-232 810.1 1339 40.0
arahy.Tifrunner.gnm1.ann1.IY5EPV Arachis hypogaea HOM05D006144 ORTHO05D006357 2.2e-231 807.0 1287 41.0
SGA_v2.0_scaffold204G41590 Striga asiatica HOM05D006144 ORTHO05D006357 4.1e-230 802.7 1341 37.8
arahy.Tifrunner.gnm1.ann1.AH11HU Arachis hypogaea HOM05D006144 ORTHO05D006357 2.0e-229 800.4 1302 40.1
MBI06_g08189_MAGBIO Magnolia biondii HOM05D006144 ORTHO05D006357 9.2e-222 775.0 1343 38.3
Hund13563 Selenicereus undatus HOM05D006144 ORTHO05D006357 2.1e-213 747.3 1306 36.5
Lalb_Chr09g0333701 Lupinus albus HOM05D006144 ORTHO05D006357 2.8e-210 736.9 1309 37.4
Sc03g0001430 Simmondsia chinensis HOM05D006144 ORTHO05D006357 1.3e-207 728.0 1314 36.1
ATR0104G015 Amborella trichopoda HOM05D006144 ORTHO05D006357 2.2e-207 727.2 1328 38.3
THA.LOC104826201 Tarenaya hassleriana HOM05D006144 ORTHO05D006357 3.9e-204 716.5 1333 36.7
HPP92_004081 Vanilla planifolia HOM05D006144 ORTHO05D006357 3.0e-196 690.3 1355 35.4
EL10Ac6g15152 Beta vulgaris HOM05D006144 ORTHO05D006357 3.9e-196 689.9 1323 35.1
HanXRQChr14g0430551 Helianthus annuus HOM05D006144 ORTHO05D006357 6.9e-193 679.1 1112 38.5
ECA232G0891 Erigeron canadensis HOM05D006144 ORTHO05D006357 5.3e-177 626.3 1059 38.1
THA.LOC104804508 Tarenaya hassleriana HOM05D006144 ORTHO05D006357 2.2e-175 620.9 1079 38.1
AUR62003855 Chenopodium quinoa HOM05D006144 ORTHO05D006357 1.4e-174 618.2 1306 33.3
Os03g0186500 Oryza sativa ssp. japonica HOM05D006144 ORTHO05D006357 4.6e-173 613.2 1119 35.7
Lj4C140T7 Lonicera japonica HOM05D006144 ORTHO05D006357 4.9e-167 593.2 693 48.5
AUR62001952 Chenopodium quinoa HOM05D006144 ORTHO05D006357 1.6e-165 588.2 942 37.0
TAR381G1042 Trochodendron aralioides HOM05D006144 ORTHO05D006357 1.6e-165 588.2 716 46.6
GSVIVG01002633001 Vitis vinifera HOM05D006144 ORTHO05D006357 1.6e-162 578.2 692 48.0
Zm00001eb006470 Zea mays HOM05D006144 ORTHO05D006357 3.7e-162 577.0 1118 35.0
Lsat_1_v5_gn_4_167780 Lactuca sativa HOM05D006144 ORTHO05D006357 6.3e-162 576.2 1113 34.4
Lj4A140T30 Lonicera japonica HOM05D006144 ORTHO05D006357 4.1e-161 573.5 634 47.6
Ah.03g144510 Amaranthus hybridus HOM05D006144 ORTHO05D006357 1.2e-160 572.0 1322 32.5
Cpa.g.sc55.182 Carica papaya HOM05D006144 ORTHO05D006357 6.5e-159 566.2 700 47.4
CDE03G0440 Ceratophyllum demersum HOM05D006144 ORTHO05D006357 7.4e-155 552.7 1256 33.4
TAR381G0606 Trochodendron aralioides HOM05D006144 ORTHO05D006357 1.4e-129 468.8 549 46.4
HPP92_004109 Vanilla planifolia HOM05D006144 ORTHO05D006357 3.7e-122 444.1 793 35.1
PSO675G0817 Papaver somniferum HOM05D006144 ORTHO05D006357 3.6e-117 427.6 717 38.4
Psat4g089200 Pisum sativum HOM05D006144 ORTHO05D006357 4.7e-117 427.2 840 37.6
Ca_22186_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 1.2e-112 412.5 788 36.9
Cpa.g.sc55.178 Carica papaya HOM05D006144 ORTHO05D006357 4.6e-112 410.6 654 38.8
PSO541G4136 Papaver somniferum HOM05D006144 ORTHO05D006357 1.6e-104 385.6 717 36.5
Hma1.2p1_1415F.1_g282000 Hydrangea macrophylla HOM05D006144 ORTHO05D006357 1.1e-102 379.4 674 39.9
MSTRG.23764 Avicennia marina HOM05D006144 ORTHO05D006357 1.1e-100 372.9 1300 27.9
unitig_736.g22372 Utricularia gibba HOM05D006144 ORTHO05D006357 3.1e-100 371.3 686 37.0
Mapoly0063s0038 Marchantia polymorpha HOM05D006144 ORTHO05D006357 7.1e-89 333.6 808 29.8
TPR.G640 Trifolium pratense HOM05D006144 ORTHO05D006357 3.0e-87 328.2 319 53.3
Mapoly0063s0034 Marchantia polymorpha HOM05D006144 ORTHO05D006357 1.6e-80 305.8 907 28.1
SEGI_17223 Sequoiadendron giganteum HOM05D006144 ORTHO05D006357 1.5e-70 272.7 892 28.6
SEGI_14166 Sequoiadendron giganteum HOM05D006144 ORTHO05D006357 4.5e-67 261.2 500 33.0
SMO301G0037 Selaginella moellendorffii HOM05D006144 ORTHO05D006357 1.2e-56 226.5 772 25.3
AUR62039591 Chenopodium quinoa HOM05D006144 ORTHO05D006357 6.1e-40 171.0 288 36.8
AUR62013383 Chenopodium quinoa HOM05D006144 ORTHO05D006017 1.7e-37 162.9 158 52.5
unitig_736.g22373 Utricularia gibba HOM05D006144 ORTHO05D006357 3.6e-32 145.2 271 33.6
Dinv29968 Davidia involucrata HOM05D000370 ORTHO05D001366 4.1e-28 131.7 110 60.0
unitig_736.g22374 Utricularia gibba HOM05D006144 ORTHO05D006357 5.9e-27 127.9 284 32.4
Aa31LG1G15380 Aethionema arabicum HOM05D012861 ORTHO05D006357 1.3e-26 126.7 537 27.4
Pp3c4_25960 Physcomitrium patens HOM05D006144 ORTHO05D006357 1.5e-22 113.2 368 24.7
AT5G66820 Arabidopsis thaliana HOM05D012861 ORTHO05D006357 9.7e-22 110.5 560 26.1
CBR_g31222 Chara braunii HOM05D006144 ORTHO05D006357 4.5e-19 101.7 140 37.1
AagrBONN_evm.TU.Sc2ySwM_228.442 Anthoceros agrestis HOM05D006144 ORTHO05D006357 5.5e-17 94.7 456 24.6
Sp2g29830 Schrenkiella parvula HOM05D012861 ORTHO05D006357 1.8e-15 89.7 207 33.8
AL8G44580 Arabidopsis lyrata HOM05D012861 ORTHO05D006357 3.4e-14 85.5 203 30.5
Carub.0008s2766 Capsella rubella HOM05D012861 ORTHO05D006357 1.8e-12 79.7 504 24.2
Sabra05G0109100 Salix brachista HOM05D006144 ORTHO05D006357 1.8e-12 79.7 176 31.8
Ca_06605_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 1.6e-11 76.6 299 36.5
Ca_06861_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 1.6e-11 76.6 299 36.5
BcaC06g34756 Brassica carinata HOM05D012861 ORTHO05D006357 1.1e-09 70.5 560 24.6
BolC7t43021H Brassica oleracea HOM05D012861 ORTHO05D006357 1.9e-09 69.7 560 24.6
MCO09G582 Micromonas commoda HOM05D006144 ORTHO05D006357 1.9e-09 69.7 139 30.2
BcaB02g09983 Brassica carinata HOM05D012861 ORTHO05D006357 1.2e-08 67.0 460 23.7
A07p17060 Brassica napus HOM05D012861 ORTHO05D006357 2.7e-08 65.9 438 26.7
BraA07t29433Z Brassica rapa HOM05D012861 ORTHO05D006357 2.7e-08 65.9 438 26.7
C07p24920 Brassica napus HOM05D012861 ORTHO05D006357 3.6e-08 65.5 559 23.8
CARHR280840 Cardamine hirsuta HOM05D012861 ORTHO05D006357 3.6e-08 65.5 187 28.3
Thhalv10004001m.g Eutrema salsugineum HOM05D012861 ORTHO05D006357 8.8e-07 60.8 495 25.5


User provided reference genes

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