Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1081.14 Capsicum annuum HOM05D003819 ORTHO05D005291 0.0e+00 1442.9 706 100.0
Nitab4.5_0006875g0030 Nicotiana tabacum HOM05D003819 ORTHO05D005291 0.0e+00 1185.6 716 81.7
Nitab4.5_0000249g0240 Nicotiana tabacum HOM05D003819 ORTHO05D005291 0.0e+00 1169.8 716 80.4
PGSC0003DMG400035320 Solanum tuberosum HOM05D003819 ORTHO05D005291 0.0e+00 1164.4 712 81.6
Sopen07g027110 Solanum pennellii HOM05D003819 ORTHO05D005291 0.0e+00 1127.1 712 79.1
Solyc12g010900.1 Solanum lycopersicum HOM05D003819 ORTHO05D005291 0.0e+00 1079.3 716 74.3
Sopen12g006260 Solanum pennellii HOM05D003819 ORTHO05D005291 0.0e+00 1077.0 716 74.2
Solyc07g055120.4 Solanum lycopersicum HOM05D003819 ORTHO05D005291 9.7e-312 1072.8 712 76.0
PGSC0003DMG400007856 Solanum tuberosum HOM05D003819 ORTHO05D005291 4.3e-311 1070.8 718 74.1
Nitab4.5_0013227g0010 Nicotiana tabacum HOM05D003819 ORTHO05D005291 4.2e-306 1054.3 717 73.1
CAN.G1148.8 Capsicum annuum HOM05D003819 ORTHO05D005291 4.6e-305 1050.8 712 73.2
Peaxi162Scf00384g00211 Petunia axillaris HOM05D003819 ORTHO05D005291 8.7e-296 1020.0 716 71.5
Peaxi162Scf00469g00034 Petunia axillaris HOM05D003819 ORTHO05D005291 8.5e-283 976.9 565 83.4
Cc05_g08390 Coffea canephora HOM05D003819 ORTHO05D005291 2.1e-281 972.2 712 67.7
Migut.M00265 Erythranthe guttata HOM05D003819 ORTHO05D005291 9.1e-277 956.8 720 67.2
Cc00_g28410 Coffea canephora HOM05D003819 ORTHO05D005291 2.0e-276 955.7 712 67.0
MSTRG.15087 Avicennia marina HOM05D003819 ORTHO05D005291 1.4e-269 932.9 716 64.9
SalBow7G4473 Salvia bowleyana HOM05D003819 ORTHO05D005291 7.7e-268 927.2 709 65.2
DCAR_021294 Daucus carota HOM05D003819 ORTHO05D005291 8.5e-267 923.7 716 64.7
Lj1P684T13 Lonicera japonica HOM05D003819 ORTHO05D005291 3.2e-266 921.8 711 65.4
SGA_v2.0_scaffold9G04831 Striga asiatica HOM05D003819 ORTHO05D005291 8.0e-265 917.1 718 64.5
Rhsim06G0130800 Rhododendron simsii HOM05D003819 ORTHO05D005291 1.7e-262 909.4 728 63.5
Actinidia11157 Actinidia chinensis HOM05D003819 ORTHO05D005291 8.5e-259 897.1 719 62.7
Lsat_1_v5_gn_8_141221 Lactuca sativa HOM05D003819 ORTHO05D005291 3.2e-258 895.2 714 63.4
HanXRQChr17g0558991 Helianthus annuus HOM05D003819 ORTHO05D005291 2.3e-256 889.0 711 63.6
ECA233G0398 Erigeron canadensis HOM05D003819 ORTHO05D005291 1.2e-255 886.7 714 62.9
Oeu058996.1 Olea europaea HOM05D003819 ORTHO05D005291 3.7e-254 881.7 721 64.2
CSS0043691 Camellia sinensis var. sinensis HOM05D003819 ORTHO05D005291 3.8e-251 871.7 727 61.9
COL.COLO4_33586 Corchorus olitorius HOM05D003819 ORTHO05D005291 7.2e-250 867.5 714 61.9
Cfa023595 Carpinus fangiana HOM05D003819 ORTHO05D005291 4.0e-248 861.7 712 61.5
Dinv07714 Davidia involucrata HOM05D003819 ORTHO05D005291 2.0e-247 859.4 722 61.6
Duzib264G1063 Durio zibethinus HOM05D003819 ORTHO05D005291 7.0e-245 850.9 711 61.2
Gohir.D12G091900 Gossypium hirsutum HOM05D003819 ORTHO05D005291 9.2e-245 850.5 712 61.9
FvH4_6g27480 Fragaria vesca HOM05D003819 ORTHO05D005291 1.6e-244 849.7 724 59.4
Prupe.3G117700 Prunus persica HOM05D003819 ORTHO05D005291 1.6e-244 849.7 734 59.0
Gohir.A12G077800 Gossypium hirsutum HOM05D003819 ORTHO05D005291 3.5e-244 848.6 713 61.6
Gorai.008G099500 Gossypium raimondii HOM05D003819 ORTHO05D005291 5.9e-244 847.8 712 61.8
FAN05G0664 Fragaria x ananassa HOM05D003819 ORTHO05D005291 1.0e-243 847.0 717 59.4
FAN02G3241 Fragaria x ananassa HOM05D003819 ORTHO05D005291 1.7e-243 846.3 723 59.1
FAN09G4766 Fragaria x ananassa HOM05D003819 ORTHO05D005291 1.7e-243 846.3 723 59.1
FAN14G1852 Fragaria x ananassa HOM05D003819 ORTHO05D005291 1.7e-243 846.3 724 59.3
TAR629G3160 Trochodendron aralioides HOM05D003819 ORTHO05D005291 4.3e-242 841.6 725 59.0
RcHm_v2.0_Chr2g0129761 Rosa chinensis HOM05D003819 ORTHO05D005291 1.8e-240 836.3 720 59.0
CiPaw.03G195200 Carya illinoinensis HOM05D003819 ORTHO05D005291 2.3e-240 835.9 726 59.6
GSVIVG01020711001 Vitis vinifera HOM05D003819 ORTHO05D005291 6.8e-240 834.3 711 59.5
Thecc.01G151000 Theobroma cacao HOM05D003819 ORTHO05D005291 3.4e-239 832.0 714 60.2
Atru.chr6.2788 Acer truncatum HOM05D003819 ORTHO05D005291 4.4e-239 831.6 715 59.4
ClCG07G002740 Citrullus lanatus HOM05D003819 ORTHO05D005291 4.4e-239 831.6 719 59.7
MD17G1266700 Malus domestica HOM05D003819 ORTHO05D005291 2.2e-238 829.3 729 59.1
MELO3C018720.2 Cucumis melo HOM05D003819 ORTHO05D005291 8.3e-238 827.4 719 59.7
MD09G1236800 Malus domestica HOM05D003819 ORTHO05D005291 9.2e-237 823.9 724 58.1
Cpa.g.sc52.168 Carica papaya HOM05D003819 ORTHO05D005291 2.7e-236 822.4 713 59.6
QL08p041841 Quercus lobata HOM05D003819 ORTHO05D005291 4.6e-236 821.6 721 59.4
CsaV3_7G005710 Cucumis sativus L. HOM05D003819 ORTHO05D005291 2.3e-235 819.3 719 59.0
Potri.014G142600 Populus trichocarpa HOM05D003819 ORTHO05D005291 1.9e-234 816.2 712 59.0
Sed0027609 Sechium edule HOM05D003819 ORTHO05D005291 1.6e-233 813.1 713 57.6
Manes.17G056400 Manihot esculenta HOM05D003819 ORTHO05D005291 2.1e-233 812.8 714 58.4
PGR142G0379 Punica granatum HOM05D003819 ORTHO05D005291 6.2e-233 811.2 717 59.8
Sabra14G0107700 Salix brachista HOM05D003819 ORTHO05D005291 6.2e-233 811.2 712 58.4
CANSAT64G0548 Cannabis sativa HOM05D003819 ORTHO05D005291 2.3e-232 809.3 718 58.2
Medtr4g080020 Medicago truncatula HOM05D003819 ORTHO05D005291 2.6e-231 805.8 720 57.9
Eucgr.K01130 Eucalyptus grandis HOM05D003819 ORTHO05D005291 4.4e-231 805.1 712 59.4
VMungo1127G0295 Vigna mungo HOM05D003819 ORTHO05D005291 2.2e-230 802.7 716 58.5
BcaNung03224 Brassica carinata HOM05D003819 ORTHO05D005291 6.4e-230 801.2 714 59.1
Lalb_Chr03g0029931 Lupinus albus HOM05D003819 ORTHO05D005291 6.4e-230 801.2 722 58.3
Phvul.011G129700 Phaseolus vulgaris HOM05D003819 ORTHO05D005291 2.4e-229 799.3 718 57.8
Aqoxy1G02044 Aquilegia oxysepala HOM05D003819 ORTHO05D005291 7.1e-229 797.7 720 56.2
Glyma.12G128600 Glycine max HOM05D003819 ORTHO05D005291 1.6e-228 796.6 717 58.2
Manes.17G056300 Manihot esculenta HOM05D003819 ORTHO05D005291 1.6e-228 796.6 712 57.7
Lj3g0009870 Lotus japonicus HOM05D003819 ORTHO05D005291 4.6e-228 795.0 715 58.0
Lalb_Chr22g0356941 Lupinus albus HOM05D003819 ORTHO05D005291 3.0e-227 792.3 719 57.7
BcaB06g29258 Brassica carinata HOM05D003819 ORTHO05D005291 3.9e-227 792.0 714 57.4
Ciclev10014472m.g Citrus clementina HOM05D003819 ORTHO05D005291 8.6e-227 790.8 718 55.8
BolC4t22032H Brassica oleracea HOM05D003819 ORTHO05D005291 2.5e-226 789.3 740 56.6
Potri.011G066700 Populus trichocarpa HOM05D003819 ORTHO05D005291 3.3e-226 788.9 708 56.1
Aa31LG1G24420 Aethionema arabicum HOM05D003819 ORTHO05D005291 1.2e-225 786.9 716 58.0
C04p03960 Brassica napus HOM05D003819 ORTHO05D005291 1.2e-225 786.9 713 58.2
TPR.G4345 Trifolium pratense HOM05D003819 ORTHO05D005291 1.2e-225 786.9 719 56.9
PSO675G1769 Papaver somniferum HOM05D003819 ORTHO05D005291 2.8e-225 785.8 726 56.3
BraA04t18686Z Brassica rapa HOM05D003819 ORTHO05D005291 6.2e-225 784.6 716 57.7
Glyma.06G277000 Glycine max HOM05D003819 ORTHO05D005291 2.3e-224 782.7 722 56.8
A04p32330 Brassica napus HOM05D003819 ORTHO05D005291 3.1e-224 782.3 716 57.5
MBI06_g08600_MAGBIO Magnolia biondii HOM05D003819 ORTHO05D005291 3.1e-224 782.3 711 57.0
BcaC02g12429 Brassica carinata HOM05D003819 ORTHO05D005291 1.5e-223 780.0 740 55.9
Sc21g0004140 Simmondsia chinensis HOM05D003819 ORTHO05D005291 2.6e-223 779.2 718 56.5
AL4G41180 Arabidopsis lyrata HOM05D003819 ORTHO05D005291 3.4e-223 778.9 720 58.3
Ca_18872_v3 Cicer arietinum L. HOM05D003819 ORTHO05D005291 3.4e-223 778.9 718 56.7
BcaC02g07227 Brassica carinata HOM05D003819 ORTHO05D005291 7.6e-223 777.7 716 57.5
C04p69840 Brassica napus HOM05D003819 ORTHO05D005291 7.6e-223 777.7 716 57.5
BolC4t28484H Brassica oleracea HOM05D003819 ORTHO05D005291 7.6e-223 777.7 716 57.5
Sp4g24760 Schrenkiella parvula HOM05D003819 ORTHO05D005291 2.9e-222 775.8 716 56.8
CARHR137760 Cardamine hirsuta HOM05D003819 ORTHO05D005291 3.7e-222 775.4 716 57.5
AT2G42620 Arabidopsis thaliana HOM05D003819 ORTHO05D005291 1.4e-221 773.5 718 57.5
EL10Ac9g20949 Beta vulgaris HOM05D003819 ORTHO05D005291 1.4e-221 773.5 720 58.1
Sabra11G0048300 Salix brachista HOM05D003819 ORTHO05D005291 1.4e-221 773.5 707 55.6
AUR62042109 Chenopodium quinoa HOM05D003819 ORTHO05D005291 6.0e-220 768.1 726 56.2
Duzib235G0786 Durio zibethinus HOM05D003819 ORTHO05D005291 1.3e-219 766.9 704 55.3
COL.COLO4_31287 Corchorus olitorius HOM05D003819 ORTHO05D005291 1.1e-218 763.8 714 55.3
THA.LOC104802258 Tarenaya hassleriana HOM05D003819 ORTHO05D005291 1.9e-218 763.1 715 56.6
Psat7g136560 Pisum sativum HOM05D003819 ORTHO05D005291 5.6e-218 761.5 741 54.9
TWI14G0201 Tripterygium wilfordii HOM05D003819 ORTHO05D005291 5.6e-218 761.5 712 56.6
Ah.01g003580 Amaranthus hybridus HOM05D003819 ORTHO05D005291 7.3e-218 761.1 721 55.6
QL05p047385 Quercus lobata HOM05D003819 ORTHO05D005291 4.4e-215 751.9 708 54.9
Gohir.A06G131200 Gossypium hirsutum HOM05D003819 ORTHO05D005291 2.2e-214 749.6 700 55.1
Dinv16776 Davidia involucrata HOM05D003819 ORTHO05D005291 2.9e-214 749.2 714 54.9
Gorai.010G159500 Gossypium raimondii HOM05D003819 ORTHO05D005291 4.9e-214 748.4 701 55.2
Haze_13379 Corylus avellana HOM05D003819 ORTHO05D005291 2.1e-209 733.0 714 55.3
vmacro12379 Vaccinium macrocarpon HOM05D003819 ORTHO05D005291 2.8e-209 732.6 724 55.4
PSO229G0146 Papaver somniferum HOM05D003819 ORTHO05D005291 5.8e-207 724.9 725 52.8
CiPaw.09G070200 Carya illinoinensis HOM05D003819 ORTHO05D005291 5.4e-205 718.4 714 52.5
Ciclev10017759m.g Citrus clementina HOM05D003819 ORTHO05D005291 7.8e-204 714.5 729 53.1
Thhalv10017925m.g Eutrema salsugineum HOM05D003819 ORTHO05D005291 5.6e-202 708.4 709 55.0
Atru.chr10.1659 Acer truncatum HOM05D003819 ORTHO05D005291 3.6e-201 705.7 715 53.6
Nn1g09185 Nelumbo nucifera HOM05D003819 ORTHO05D005291 5.4e-197 691.8 576 60.8
Gohir.D06G137250 Gossypium hirsutum HOM05D003819 ORTHO05D005291 2.7e-196 689.5 700 52.9
CDE10G0290 Ceratophyllum demersum HOM05D003819 ORTHO05D005291 4.6e-196 688.7 711 52.7
Gorai.011G039300 Gossypium raimondii HOM05D003819 ORTHO05D005291 5.6e-194 681.8 706 51.4
Gohir.D10G037300 Gossypium hirsutum HOM05D003819 ORTHO05D005291 9.6e-194 681.0 706 51.3
AUR62040526 Chenopodium quinoa HOM05D003819 ORTHO05D005291 5.5e-189 665.2 694 51.9
Gohir.A10G036700 Gossypium hirsutum HOM05D003819 ORTHO05D005291 9.3e-189 664.5 677 52.4
Lj3g0006196 Lotus japonicus HOM05D003819 ORTHO05D005291 2.9e-182 642.9 702 51.3
SEGI_05136 Sequoiadendron giganteum HOM05D003819 ORTHO05D005291 1.2e-180 637.5 841 43.8
ATR0602G021 Amborella trichopoda HOM05D003819 ORTHO05D005291 9.7e-178 627.9 714 48.0
THA.LOC104813346 Tarenaya hassleriana HOM05D003819 ORTHO05D005291 1.8e-176 623.6 716 46.9
Dinv40684 Davidia involucrata HOM05D003819 ORTHO05D005291 3.2e-173 612.8 719 48.7
Actinidia10955 Actinidia chinensis HOM05D003819 ORTHO05D005291 2.0e-167 593.6 496 62.1
Zm00001eb270950 Zea mays HOM05D003819 ORTHO05D005291 3.4e-167 592.8 732 44.9
Zm00001eb376660 Zea mays HOM05D003819 ORTHO05D005291 1.3e-166 590.9 732 45.2
Os06g0154200 Oryza sativa ssp. japonica HOM05D003819 ORTHO05D005291 3.9e-163 579.3 754 43.8
Haze_06225 Corylus avellana HOM05D003819 ORTHO05D005291 4.8e-161 572.4 691 46.0
Mapoly0113s0006 Marchantia polymorpha HOM05D003819 ORTHO05D005291 6.1e-156 555.4 761 42.6
Pp3c17_1180 Physcomitrium patens HOM05D003819 ORTHO05D005291 4.4e-154 549.3 808 41.3
SMO118G0454 Selaginella moellendorffii HOM05D003819 ORTHO05D005291 2.0e-146 523.9 728 41.2
Carub.0004s2507 Capsella rubella HOM05D003819 ORTHO05D005291 1.0e-142 511.5 558 50.4
Thecc.06G169900 Theobroma cacao HOM05D003819 ORTHO05D005291 2.9e-142 510.0 528 50.0
unitig_85.g27374 Utricularia gibba HOM05D003819 ORTHO05D005291 1.6e-127 461.1 360 66.4
RcHm_v2.0_Chr2g0128411 Rosa chinensis HOM05D003819 ORTHO05D005291 2.6e-122 443.7 362 63.3
Lj3g0028116 Lotus japonicus HOM05D003819 ORTHO05D005291 3.6e-108 396.7 435 50.3
AagrBONN_evm.TU.Sc2ySwM_228.1793 Anthoceros agrestis HOM05D003819 ORTHO05D005291 1.9e-101 374.4 922 31.6
SHI10509 Sapria himalayana HOM05D003819 ORTHO05D005291 3.6e-100 370.2 376 51.9
RcHm_v2.0_Chr2g0128401 Rosa chinensis HOM05D003819 ORTHO05D005291 1.5e-98 364.8 328 55.2
unitig_85.g27373 Utricularia gibba HOM05D003819 ORTHO05D005291 5.8e-98 362.8 315 54.9
Thecc.K0007200 Theobroma cacao HOM05D003819 ORTHO05D005291 1.1e-91 342.0 232 73.3
Oeu053232.1 Olea europaea HOM05D003819 ORTHO05D005291 4.5e-82 310.1 415 44.6
Atru.chr11.57 Acer truncatum HOM05D003819 ORTHO05D005291 1.4e-72 278.5 435 38.6
Cfa000614 Carpinus fangiana HOM05D003819 ORTHO05D005291 2.1e-68 264.6 407 38.6
A05p03380 Brassica napus HOM05D003819 ORTHO05D005291 5.5e-56 223.4 177 66.1
Ciclev10026180m.g Citrus clementina HOM05D003819 ORTHO05D005291 3.7e-44 184.1 191 51.8
Nn2g14348 Nelumbo nucifera HOM05D003819 ORTHO05D023588 1.8e-43 181.8 145 56.6
AUR62037398 Chenopodium quinoa HOM05D003819 ORTHO05D005291 4.1e-35 154.1 99 74.7
Nn6g34429 Nelumbo nucifera HOM05D003819 ORTHO05D019686 2.3e-30 138.3 151 49.7
Cc02_g34240 Coffea canephora HOM05D003819 ORTHO05D023588 7.0e-27 126.7 85 67.1
Dinv24544 Davidia involucrata HOM05D003819 ORTHO05D005291 5.9e-26 123.6 145 43.4
Aqoxy450s002 Aquilegia oxysepala HOM05D003819 ORTHO05D019686 5.0e-25 120.6 103 53.4
Aqoxy7G03214 Aquilegia oxysepala HOM05D003819 ORTHO05D019686 5.0e-25 120.6 103 53.4
Nn1g05661 Nelumbo nucifera HOM05D003819 ORTHO05D005291 3.2e-24 117.9 77 71.4
A05p03390 Brassica napus HOM05D003819 ORTHO05D019686 4.2e-24 117.5 82 67.1
Lalb_Chr14g0367511 Lupinus albus HOM05D003819 ORTHO05D005291 2.1e-23 115.2 78 69.2
FvH4_4g05521 Fragaria vesca HOM05D003819 ORTHO05D005291 1.0e-22 112.8 204 34.8
Psat3g013160 Pisum sativum HOM05D003819 ORTHO05D005291 1.5e-21 109.0 158 38.0
Mapoly0086s0086 Marchantia polymorpha HOM05D003819 ORTHO05D038376 1.4e-19 102.4 454 25.6
Aqoxy450s003 Aquilegia oxysepala HOM05D003819 ORTHO05D023588 7.0e-19 100.1 102 49.0
Aqoxy7G03213 Aquilegia oxysepala HOM05D003819 ORTHO05D023588 7.0e-19 100.1 102 49.0
Haze_22749 Corylus avellana HOM05D003819 ORTHO05D005291 1.6e-15 89.0 60 65.0
FvH4_2g05661 Fragaria vesca HOM05D003819 ORTHO05D025473 1.0e-14 86.3 135 39.3
Nn3g18421 Nelumbo nucifera HOM05D003819 ORTHO05D019686 1.0e-14 86.3 86 52.3
Nn1g05873 Nelumbo nucifera HOM05D003819 ORTHO05D005291 2.3e-14 85.1 73 53.4
Cc00_g06350 Coffea canephora HOM05D003819 ORTHO05D023588 6.8e-14 83.6 169 36.1
C04p03970 Brassica napus HOM05D003819 ORTHO05D032918 4.9e-12 77.4 59 64.4
Psat7g136520 Pisum sativum HOM05D003819 ORTHO05D005291 4.9e-12 77.4 80 53.8
BcaC02g12428 Brassica carinata HOM05D003819 ORTHO05D032918 1.8e-11 75.5 68 55.9
Nn5g28220 Nelumbo nucifera HOM05D003819 ORTHO05D019686 1.8e-11 75.5 52 67.3
Psat1g205040 Pisum sativum HOM05D003819 ORTHO05D005291 2.4e-11 75.1 210 31.4
Nn1g05663 Nelumbo nucifera HOM05D003819 ORTHO05D019686 5.4e-11 73.9 59 57.6
Aqoxy7G03215 Aquilegia oxysepala HOM05D003819 ORTHO05D005291 7.0e-11 73.6 62 58.1
FvH4_2g12921 Fragaria vesca HOM05D003819 ORTHO05D025473 9.2e-11 73.2 96 39.6
Haze_02876 Corylus avellana HOM05D000448 ORTHO05D000291 1.2e-10 72.8 50 66.0
AagrBONN_evm.TU.Sc2ySwM_228.4816 Anthoceros agrestis HOM05D003819 ORTHO05D038376 2.7e-10 71.6 215 27.9
BolC4t22033H Brassica oleracea HOM05D003819 ORTHO05D032918 1.3e-09 69.3 59 57.6
Psat5g121640 Pisum sativum HOM05D000710 ORTHO05D000336 2.1e-07 62.0 193 30.6
CsaV3_6G052170 Cucumis sativus L. HOM05D000710 ORTHO05D000336 3.6e-07 61.2 185 28.1
arahy.Tifrunner.gnm1.ann1.FQN6EF Arachis hypogaea HOM05D000710 ORTHO05D000336 6.2e-07 60.5 110 31.8
Duzib168G1449 Durio zibethinus HOM05D001905 ORTHO05D001820 6.2e-07 60.5 204 28.4
AL6G49120 Arabidopsis lyrata HOM05D000710 ORTHO05D000336 4.0e-06 57.8 153 34.0
Medtr5g036740 Medicago truncatula HOM05D000710 ORTHO05D000336 4.0e-06 57.8 184 28.8
Gohir.D07G032000 Gossypium hirsutum HOM05D001818 ORTHO05D001780 5.2e-06 57.4 141 29.8
Sc02g0007530 Simmondsia chinensis HOM05D001905 ORTHO05D001820 5.2e-06 57.4 208 26.0


User provided reference genes

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