Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G108.61 Capsicum annuum HOM05D007326 ORTHO05D009048 7.4e-56 220.3 112 100.0
Nitab4.5_0002492g0030 Nicotiana tabacum HOM05D007326 ORTHO05D009048 7.2e-43 177.2 112 81.2
Nitab4.5_0000714g0090 Nicotiana tabacum HOM05D007326 ORTHO05D009048 1.2e-37 159.8 114 76.3
Solyc03g083450.1 Solanum lycopersicum HOM05D007326 ORTHO05D009048 2.2e-36 155.6 112 72.3
Nitab4.5_0000714g0080 Nicotiana tabacum HOM05D001433 ORTHO05D009048 4.2e-35 151.4 112 72.3
PGSC0003DMG400009118 Solanum tuberosum HOM05D007326 ORTHO05D009048 9.4e-35 150.2 109 74.3
Sopen03g023220 Solanum pennellii HOM05D007326 ORTHO05D009048 1.4e-33 146.4 112 69.6
Peaxi162Scf00550g00426 Petunia axillaris HOM05D007326 ORTHO05D009048 1.7e-31 139.4 99 72.7
Oeu037093.1 Olea europaea HOM05D007326 ORTHO05D009048 3.3e-16 88.6 112 48.2
Rhsim09G0011500 Rhododendron simsii HOM05D007326 ORTHO05D009048 3.3e-16 88.6 132 45.5
COL.COLO4_03426 Corchorus olitorius HOM05D007326 ORTHO05D009048 2.2e-15 85.9 90 51.1
Gohir.A11G014200 Gossypium hirsutum HOM05D007326 ORTHO05D009048 3.1e-14 82.0 88 50.0
Gohir.D11G014400 Gossypium hirsutum HOM05D007326 ORTHO05D009048 3.1e-14 82.0 88 50.0
Gorai.007G014800 Gossypium raimondii HOM05D007326 ORTHO05D009048 3.1e-14 82.0 88 50.0
vmacro06547 Vaccinium macrocarpon HOM05D007326 ORTHO05D009048 3.1e-14 82.0 123 43.9
Glyma.07G086800 Glycine max HOM05D007326 ORTHO05D009048 2.0e-13 79.3 91 48.4
Thecc.03G195600 Theobroma cacao HOM05D007326 ORTHO05D009048 2.7e-13 79.0 91 48.4
TAR629G0302 Trochodendron aralioides HOM05D007326 ORTHO05D009048 2.7e-13 79.0 125 42.4
Actinidia06160 Actinidia chinensis HOM05D007326 ORTHO05D009048 3.5e-13 78.6 106 49.1
TPR.G14875 Trifolium pratense HOM05D007326 ORTHO05D009048 3.5e-13 78.6 89 47.2
Atru.chr1.147 Acer truncatum HOM05D007326 ORTHO05D009048 4.5e-13 78.2 89 51.7
Hma1.2p1_0538F.1_g174400 Hydrangea macrophylla HOM05D007326 ORTHO05D009048 4.5e-13 78.2 126 38.9
MSTRG.55 Avicennia marina HOM05D007326 ORTHO05D009048 5.9e-13 77.8 114 43.0
Dinv29296 Davidia involucrata HOM05D007326 ORTHO05D009048 1.0e-12 77.0 109 44.0
VMungo0464G1195 Vigna mungo HOM05D007326 ORTHO05D009048 3.8e-12 75.1 92 45.7
Glyma.09G190100 Glycine max HOM05D007326 ORTHO05D009048 6.5e-12 74.3 89 47.2
Duzib205G1092 Durio zibethinus HOM05D007326 ORTHO05D009048 8.5e-12 73.9 124 40.3
ECA232G0297 Erigeron canadensis HOM05D007326 ORTHO05D009048 1.1e-11 73.6 90 50.0
Nn4g24310 Nelumbo nucifera HOM05D000291 ORTHO05D009048 1.1e-11 73.6 114 41.2
Aqoxy7G00103 Aquilegia oxysepala HOM05D007326 ORTHO05D009048 1.9e-11 72.8 123 36.6
Oeu030278.1 Olea europaea HOM05D007326 ORTHO05D009048 2.5e-11 72.4 116 41.4
CiPaw.06G009800 Carya illinoinensis HOM05D007326 ORTHO05D009048 3.2e-11 72.0 123 39.8
SGA_v2.0_scaffold105G30435 Striga asiatica HOM05D007326 ORTHO05D009048 5.5e-11 71.2 89 49.4
EL10Ac9g21379 Beta vulgaris HOM05D007326 ORTHO05D009048 7.2e-11 70.9 34 85.3
MBI06_g08457_MAGBIO Magnolia biondii HOM05D007326 ORTHO05D009048 7.2e-11 70.9 121 38.8
Ah.04g150610 Amaranthus hybridus HOM05D007326 ORTHO05D009048 9.4e-11 70.5 36 83.3
CSS0025602 Camellia sinensis var. sinensis HOM05D007326 ORTHO05D009048 1.2e-10 70.1 126 42.1
CDE05G0016 Ceratophyllum demersum HOM05D007326 ORTHO05D009048 1.2e-10 70.1 94 50.0
ClCG01G000490 Citrullus lanatus HOM05D007326 ORTHO05D009048 1.2e-10 70.1 114 38.6
SGA_v2.0_scaffold55G19762 Striga asiatica HOM05D007326 ORTHO05D009048 1.6e-10 69.7 97 43.3
ATR0762G055 Amborella trichopoda HOM05D007326 ORTHO05D009048 2.1e-10 69.3 51 66.7
Sc03g0007330 Simmondsia chinensis HOM05D007326 ORTHO05D009048 2.1e-10 69.3 40 75.0
Actinidia06159 Actinidia chinensis HOM05D007326 ORTHO05D009048 2.7e-10 68.9 120 41.7
Os06g0157800 Oryza sativa ssp. japonica HOM05D007326 ORTHO05D009048 3.6e-10 68.6 33 87.9
Potri.015G017700 Populus trichocarpa HOM05D007326 ORTHO05D009048 3.6e-10 68.6 66 51.5
TWI23G0901 Tripterygium wilfordii HOM05D007326 ORTHO05D009048 4.7e-10 68.2 121 41.3
Ciclev10006260m.g Citrus clementina HOM05D007326 ORTHO05D009048 6.1e-10 67.8 94 45.7
Manes.06G159200 Manihot esculenta HOM05D007326 ORTHO05D009048 6.1e-10 67.8 88 50.0
TAR375G0672 Trochodendron aralioides HOM05D007326 ORTHO05D009048 6.1e-10 67.8 101 41.6
Haze_14278 Corylus avellana HOM05D007326 ORTHO05D009048 8.0e-10 67.4 92 45.7
PGR042G3637 Punica granatum HOM05D007326 ORTHO05D009048 8.0e-10 67.4 112 41.1
CSS0006442 Camellia sinensis var. sinensis HOM05D007326 ORTHO05D009048 1.0e-09 67.0 123 39.8
Lj1g0012737 Lotus japonicus HOM05D007326 ORTHO05D009048 1.0e-09 67.0 32 87.5
FAN10G2940 Fragaria x ananassa HOM05D007326 ORTHO05D009048 1.4e-09 66.6 36 75.0
Medtr3g109290 Medicago truncatula HOM05D007326 ORTHO05D009048 1.4e-09 66.6 34 79.4
Psat0s2030g0040 Pisum sativum HOM05D007326 ORTHO05D009048 1.4e-09 66.6 89 43.8
Eucgr.A01472 Eucalyptus grandis HOM05D007326 ORTHO05D009048 1.8e-09 66.2 33 81.8
MELO3C005879.2 Cucumis melo HOM05D007326 ORTHO05D009048 3.0e-09 65.5 90 42.2
CsaV3_5G000570 Cucumis sativus L. HOM05D007326 ORTHO05D009048 3.0e-09 65.5 88 45.5
FAN10G1221 Fragaria x ananassa HOM05D007326 ORTHO05D009048 3.0e-09 65.5 36 75.0
Zm00001eb376510 Zea mays HOM05D007326 ORTHO05D009048 3.0e-09 65.5 40 67.5
Lsat_1_v5_gn_9_58181 Lactuca sativa HOM05D007326 ORTHO05D009048 4.0e-09 65.1 88 45.5
AUR62010038 Chenopodium quinoa HOM05D007326 ORTHO05D009048 5.2e-09 64.7 121 36.4
Aa31LG1G16060 Aethionema arabicum HOM05D007326 ORTHO05D009048 6.8e-09 64.3 32 84.4
AUR62013031 Chenopodium quinoa HOM05D007326 ORTHO05D009048 8.8e-09 63.9 114 38.6
Pp3c23_5100 Physcomitrium patens HOM05D007326 ORTHO05D009048 8.8e-09 63.9 86 40.7
Actinidia06153 Actinidia chinensis HOM05D003276 ORTHO05D003809 1.2e-08 63.5 54 57.4
Manes.05G205250 Manihot esculenta HOM05D007326 ORTHO05D009048 1.2e-08 63.5 42 66.7
Phvul.004G162900 Phaseolus vulgaris HOM05D007326 ORTHO05D009048 1.2e-08 63.5 30 90.0
AL8G43810 Arabidopsis lyrata HOM05D007326 ORTHO05D009048 1.5e-08 63.2 32 84.4
Ca_15635_v3 Cicer arietinum L. HOM05D007326 ORTHO05D009048 1.5e-08 63.2 30 86.7
SEGI_38766 Sequoiadendron giganteum HOM05D007326 ORTHO05D009048 1.5e-08 63.2 33 78.8
ATR0037G036 Amborella trichopoda HOM05D007326 ORTHO05D009048 2.0e-08 62.8 90 44.4
Cpa.g.sc3.64 Carica papaya HOM05D007326 ORTHO05D009048 2.6e-08 62.4 118 39.0
THA.LOC104819263 Tarenaya hassleriana HOM05D007326 ORTHO05D009048 2.6e-08 62.4 59 52.5
CANSAT21G2203 Cannabis sativa HOM05D007326 ORTHO05D009048 3.4e-08 62.0 120 35.8
Sed0023316 Sechium edule HOM05D007326 ORTHO05D009048 3.4e-08 62.0 60 51.7
AT5G67490 Arabidopsis thaliana HOM05D007326 ORTHO05D009048 4.4e-08 61.6 32 81.2
BcaB02g09919 Brassica carinata HOM05D007326 ORTHO05D009048 4.4e-08 61.6 32 81.2
A06p32910 Brassica napus HOM05D007326 ORTHO05D009048 4.4e-08 61.6 31 83.9
C03p59560 Brassica napus HOM05D007326 ORTHO05D009048 4.4e-08 61.6 31 83.9
BolC3t18219H Brassica oleracea HOM05D007326 ORTHO05D009048 4.4e-08 61.6 31 83.9
BraA06t26223Z Brassica rapa HOM05D007326 ORTHO05D009048 4.4e-08 61.6 31 83.9
Carub.0008s2698 Capsella rubella HOM05D007326 ORTHO05D009048 4.4e-08 61.6 32 81.2
CARHR280100 Cardamine hirsuta HOM05D007326 ORTHO05D009048 4.4e-08 61.6 32 81.2
Sp2g29160 Schrenkiella parvula HOM05D007326 ORTHO05D009048 4.4e-08 61.6 31 83.9
Mapoly0007s0050 Marchantia polymorpha HOM05D007326 ORTHO05D009048 5.7e-08 61.2 87 42.5
TPR.G1327 Trifolium pratense HOM05D007326 ORTHO05D009048 7.5e-08 60.8 89 42.7
TAR629G2746 Trochodendron aralioides HOM05D007326 ORTHO05D009048 1.3e-07 60.1 37 70.3
Prupe.2G311900 Prunus persica HOM05D007326 ORTHO05D009048 3.7e-07 58.5 117 39.3
FAN03G0879 Fragaria x ananassa HOM05D007326 ORTHO05D009048 4.8e-07 58.2 54 50.0
Rhsim03G0206100 Rhododendron simsii HOM05D043765 ORTHO05D009048 4.8e-07 58.2 111 39.6
RcHm_v2.0_Chr1g0381021 Rosa chinensis HOM05D007326 ORTHO05D009048 4.8e-07 58.2 107 37.4
HPP92_020021 Vanilla planifolia HOM05D007326 ORTHO05D009048 6.3e-07 57.8 117 39.3
FAN06G2911 Fragaria x ananassa HOM05D007326 ORTHO05D009048 8.3e-07 57.4 84 41.7
Thhalv10005175m.g Eutrema salsugineum HOM05D007326 ORTHO05D009048 1.1e-06 57.0 91 42.9
FvH4_7g31800 Fragaria vesca HOM05D000354 ORTHO05D000717 1.4e-06 56.6 78 43.6
QL09p009621 Quercus lobata HOM05D007326 ORTHO05D009048 7.0e-06 54.3 87 36.8


User provided reference genes

Program Settings