Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G108.10 Capsicum annuum HOM05D005720 ORTHO05D006984 0.0e+00 1860.5 946 100.0
Sopen03g003510 Solanum pennellii HOM05D005720 ORTHO05D006984 0.0e+00 1425.2 948 78.6
Solyc03g007550.4 Solanum lycopersicum HOM05D005720 ORTHO05D006984 0.0e+00 1421.0 948 78.4
Nitab4.5_0000472g0110 Nicotiana tabacum HOM05D005720 ORTHO05D006984 0.0e+00 1303.5 970 72.3
Peaxi162Scf00904g00464 Petunia axillaris HOM05D005720 ORTHO05D006984 0.0e+00 1218.4 974 68.7
Nitab4.5_0001331g0120 Nicotiana tabacum HOM05D005720 ORTHO05D006984 5.1e-299 1031.2 974 61.0
Dinv28352 Davidia involucrata HOM05D005720 ORTHO05D006984 1.2e-223 780.8 1009 48.4
Cc02_g02050 Coffea canephora HOM05D005720 ORTHO05D006984 4.6e-207 725.7 964 46.7
Hma1.2p1_0142F.1_g064130 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 5.4e-200 702.2 988 45.1
Oeu037117.2 Olea europaea HOM05D005720 ORTHO05D006984 6.8e-195 685.3 986 44.2
MSTRG.27056 Avicennia marina HOM05D005720 ORTHO05D006984 8.4e-185 651.7 988 43.9
Rhsim03G0197100 Rhododendron simsii HOM05D005720 ORTHO05D006984 2.7e-183 646.7 1005 43.7
SalBow4G2744 Salvia bowleyana HOM05D005720 ORTHO05D006984 2.7e-175 620.2 975 42.9
Actinidia08611 Actinidia chinensis HOM05D005720 ORTHO05D006984 1.3e-174 617.8 885 45.6
QL09p011597 Quercus lobata HOM05D005720 ORTHO05D006984 1.7e-174 617.5 1037 41.3
SalBow4G2908 Salvia bowleyana HOM05D005720 ORTHO05D006984 2.3e-174 617.1 975 43.0
HanXRQChr01g0031161 Helianthus annuus HOM05D005720 ORTHO05D006984 1.1e-173 614.8 992 41.5
GSVIVG01028746001 Vitis vinifera HOM05D005720 ORTHO05D006984 1.4e-171 607.8 992 41.1
Migut.F00255 Erythranthe guttata HOM05D005720 ORTHO05D006984 3.1e-171 606.7 960 42.4
Manes.06G155900 Manihot esculenta HOM05D005720 ORTHO05D006984 1.5e-165 587.8 1014 40.6
HanXRQChr11g0353671 Helianthus annuus HOM05D005720 ORTHO05D006984 2.1e-164 583.9 988 40.6
CiPaw.06G006200 Carya illinoinensis HOM05D005720 ORTHO05D006984 2.8e-164 583.6 1014 41.3
Cfa016346 Carpinus fangiana HOM05D005720 ORTHO05D006984 6.2e-164 582.4 1027 41.5
Lsat_1_v5_gn_1_45000 Lactuca sativa HOM05D005720 ORTHO05D006984 1.4e-163 581.3 989 40.7
Thecc.03G190400 Theobroma cacao HOM05D005720 ORTHO05D006984 7.1e-160 568.9 1017 39.6
Nn1g01775 Nelumbo nucifera HOM05D005720 ORTHO05D006984 9.3e-160 568.5 1023 39.2
Prupe.2G305400 Prunus persica HOM05D005720 ORTHO05D006984 8.2e-156 555.4 1011 40.4
ECA248G2416 Erigeron canadensis HOM05D005720 ORTHO05D006984 1.8e-155 554.3 984 40.3
MD07G1283200 Malus domestica HOM05D005720 ORTHO05D006984 1.2e-154 551.6 1015 40.8
COL.COLO4_24780 Corchorus olitorius HOM05D005720 ORTHO05D006984 6.5e-153 545.8 1063 39.0
MD01G1213400 Malus domestica HOM05D005720 ORTHO05D006984 1.3e-150 538.1 1006 40.6
SGA_v2.0_scaffold192G40596 Striga asiatica HOM05D005720 ORTHO05D006984 1.3e-150 538.1 919 40.0
DCAR_010640 Daucus carota HOM05D005720 ORTHO05D006984 3.3e-149 533.5 989 39.3
Potri.012G033800 Populus trichocarpa HOM05D005720 ORTHO05D006984 2.8e-148 530.4 1021 40.0
Duzib084G1243 Durio zibethinus HOM05D005720 ORTHO05D006984 4.1e-147 526.6 1024 38.3
FAN01G1865 Fragaria x ananassa HOM05D005720 ORTHO05D006984 1.2e-146 525.0 1011 38.7
FAN06G3446 Fragaria x ananassa HOM05D005720 ORTHO05D006984 4.5e-146 523.1 1011 38.6
FvH4_7g30790 Fragaria vesca HOM05D005720 ORTHO05D006984 1.0e-145 521.9 1011 38.3
TWI39G1277 Tripterygium wilfordii HOM05D005720 ORTHO05D006984 1.7e-145 521.2 1021 38.4
FAN03G0014 Fragaria x ananassa HOM05D005720 ORTHO05D006984 3.8e-145 520.0 1007 38.5
FAN06G1427 Fragaria x ananassa HOM05D005720 ORTHO05D006984 1.9e-144 517.7 1011 38.1
Hund11695 Selenicereus undatus HOM05D005720 ORTHO05D006984 4.2e-144 516.5 997 37.9
Sabra12G0022900 Salix brachista HOM05D005720 ORTHO05D006984 9.4e-144 515.4 1023 39.6
Haze_00092 Corylus avellana HOM05D005720 ORTHO05D006984 1.5e-141 508.1 1027 39.0
Gohir.A09G183200 Gossypium hirsutum HOM05D005720 ORTHO05D006984 4.4e-141 506.5 1024 38.2
Gohir.D09G177900 Gossypium hirsutum HOM05D005720 ORTHO05D006984 3.4e-138 496.9 1024 37.3
TPR.G16464 Trifolium pratense HOM05D005720 ORTHO05D006984 1.4e-136 491.5 1001 37.4
EL10Ac3g05366 Beta vulgaris HOM05D005720 ORTHO05D006984 1.9e-136 491.1 1010 37.5
Aqoxy7G00210 Aquilegia oxysepala HOM05D005720 ORTHO05D006984 3.2e-136 490.3 1014 37.5
Cpa.g.sc3.32 Carica papaya HOM05D005720 ORTHO05D006984 5.5e-136 489.6 1017 37.3
Glyma.16G069100 Glycine max HOM05D005720 ORTHO05D006984 2.1e-135 487.6 1009 38.7
Ca_27881_v3 Cicer arietinum L. HOM05D005720 ORTHO05D006984 1.8e-134 484.6 999 36.9
Gorai.006G200000 Gossypium raimondii HOM05D005720 ORTHO05D006984 3.9e-134 483.4 1021 37.5
Lj3g0007394 Lotus japonicus HOM05D005720 ORTHO05D006984 2.8e-132 477.2 1009 36.0
RcHm_v2.0_Chr1g0379731 Rosa chinensis HOM05D005720 ORTHO05D006984 1.4e-131 474.9 892 39.9
Sc13g0009450 Simmondsia chinensis HOM05D005720 ORTHO05D006984 4.1e-131 473.4 1006 36.7
arahy.Tifrunner.gnm1.ann1.YA4Y9S Arachis hypogaea HOM05D005720 ORTHO05D006984 4.5e-130 469.9 1048 35.8
FAN10G0387 Fragaria x ananassa HOM05D005720 ORTHO05D006984 4.5e-130 469.9 950 37.6
arahy.Tifrunner.gnm1.ann1.35A5BC Arachis hypogaea HOM05D005720 ORTHO05D006984 1.7e-129 468.0 1047 35.7
AUR62031469 Chenopodium quinoa HOM05D005720 ORTHO05D006984 1.2e-127 461.8 1003 35.8
Ah.07g206170 Amaranthus hybridus HOM05D005720 ORTHO05D006984 4.7e-127 459.9 1010 35.0
Medtr8g058270 Medicago truncatula HOM05D005720 ORTHO05D006984 5.2e-126 456.4 967 36.5
CsaV3_4G002370 Cucumis sativus L. HOM05D005720 ORTHO05D006984 5.7e-125 453.0 1017 36.4
Lalb_Chr06g0161451 Lupinus albus HOM05D005720 ORTHO05D006984 1.3e-124 451.8 1009 35.3
TAR629G0723 Trochodendron aralioides HOM05D005720 ORTHO05D006984 2.8e-124 450.7 775 40.8
AL8G27450 Arabidopsis lyrata HOM05D005720 ORTHO05D006984 8.2e-124 449.1 1001 35.5
unitig_747.g21855 Utricularia gibba HOM05D000121 ORTHO05D000102 1.4e-123 448.4 1036 35.7
CARHR265920 Cardamine hirsuta HOM05D005720 ORTHO05D006984 5.3e-123 446.4 995 35.0
VMungo1127G0215 Vigna mungo HOM05D005720 ORTHO05D006984 3.5e-122 443.7 988 36.3
Thhalv10012590m.g Eutrema salsugineum HOM05D005720 ORTHO05D006984 1.0e-121 442.2 1000 35.0
Hma1.2p1_1891F.1_g306670 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 1.0e-121 442.2 921 38.0
MELO3C017804.2 Cucumis melo HOM05D005720 ORTHO05D006984 5.0e-121 439.9 980 36.3
Aa31LG3G9180 Aethionema arabicum HOM05D005720 ORTHO05D006984 1.5e-120 438.3 999 34.7
MBI06_g04292_MAGBIO Magnolia biondii HOM05D005720 ORTHO05D006984 2.5e-120 437.6 1034 36.0
TAR636G3648 Trochodendron aralioides HOM05D005720 ORTHO05D006984 2.5e-120 437.6 791 39.3
Eucgr.K00315 Eucalyptus grandis HOM05D005720 ORTHO05D006984 7.2e-120 436.0 1023 35.3
AT5G52950 Arabidopsis thaliana HOM05D005720 ORTHO05D006984 2.6e-117 427.6 1000 35.6
THA.LOC104825125 Tarenaya hassleriana HOM05D005720 ORTHO05D006984 3.7e-116 423.7 997 34.1
Carub.0008s1313 Capsella rubella HOM05D005720 ORTHO05D006984 4.1e-115 420.2 1002 34.0
PSO384G4812 Papaver somniferum HOM05D005720 ORTHO05D006984 1.2e-114 418.7 1021 34.5
MD01G1213200 Malus domestica HOM05D005720 ORTHO05D006984 2.7e-114 417.5 866 38.0
PSO135G0324 Papaver somniferum HOM05D005720 ORTHO05D006984 4.5e-114 416.8 1024 34.3
C09p42670 Brassica napus HOM05D005720 ORTHO05D006984 5.0e-113 413.3 1000 33.8
BolC9t57143H Brassica oleracea HOM05D005720 ORTHO05D006984 5.0e-113 413.3 1000 33.8
BcaC03g14481 Brassica carinata HOM05D005720 ORTHO05D006984 1.9e-112 411.4 1004 33.7
BraA02t06213Z Brassica rapa HOM05D005720 ORTHO05D006984 9.5e-112 409.1 1002 34.0
Sp6g15110 Schrenkiella parvula HOM05D005720 ORTHO05D006984 6.8e-110 402.9 998 32.9
A02p11480 Brassica napus HOM05D005720 ORTHO05D006984 4.4e-109 400.2 1004 33.5
FAN10G2558 Fragaria x ananassa HOM05D005720 ORTHO05D006984 5.7e-109 399.8 826 36.4
ClCG07G011830 Citrullus lanatus HOM05D005720 ORTHO05D006984 6.3e-108 396.4 1018 34.2
BolC2t08045H Brassica oleracea HOM05D005720 ORTHO05D006984 9.2e-107 392.5 1004 33.2
PGSC0003DMG400006595 Solanum tuberosum HOM05D005720 ORTHO05D006984 2.0e-106 391.3 247 86.6
C02p19150 Brassica napus HOM05D005720 ORTHO05D006984 2.7e-106 391.0 1004 33.2
AUR62021063 Chenopodium quinoa HOM05D005720 ORTHO05D006984 1.1e-104 385.6 987 33.7
Psat4g140280 Pisum sativum HOM05D005720 ORTHO05D006984 2.5e-104 384.4 875 34.6
vmacro06588 Vaccinium macrocarpon HOM05D005720 ORTHO05D006984 1.1e-99 369.0 591 40.9
Hma1.2p1_0142F.1_g064120 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 1.8e-99 368.2 474 46.0
Lj3A914T79 Lonicera japonica HOM05D005720 ORTHO05D006984 1.2e-98 365.5 594 43.9
CSS0019438 Camellia sinensis var. sinensis HOM05D005720 ORTHO05D006984 7.8e-98 362.8 449 50.6
CSS0038820 Camellia sinensis var. sinensis HOM05D005720 ORTHO05D006984 1.3e-89 335.5 443 49.4
SHI10811 Sapria himalayana HOM05D005720 ORTHO05D006984 3.0e-89 334.3 892 32.8
HPP92_005221 Vanilla planifolia HOM05D005720 ORTHO05D006984 1.1e-86 325.9 949 31.4
Phvul.011G167400 Phaseolus vulgaris HOM05D005720 ORTHO05D006984 6.6e-81 306.6 661 38.1
ATR1131G019 Amborella trichopoda HOM05D005720 ORTHO05D006984 4.1e-75 287.3 1023 29.9
Hma1.2p1_0142F.1_g064140 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 6.0e-74 283.5 368 49.2
Lj3P914T60 Lonicera japonica HOM05D005720 ORTHO05D006984 1.2e-71 275.8 352 48.0
PGR142G3228 Punica granatum HOM05D005720 ORTHO05D006984 2.4e-70 271.6 1009 28.8
CDE02G2607 Ceratophyllum demersum HOM05D005720 ORTHO05D006984 4.0e-70 270.8 897 29.0
BcaB08g35658 Brassica carinata HOM05D005720 ORTHO05D006984 6.4e-68 263.5 612 33.0
Zm00001eb119640 Zea mays HOM05D005720 ORTHO05D006984 6.0e-58 230.3 1023 26.9
HPP92_005214 Vanilla planifolia HOM05D005720 ORTHO05D006984 2.5e-56 224.9 927 27.7
SEGI_30168 Sequoiadendron giganteum HOM05D005720 ORTHO05D006984 6.9e-54 216.9 1101 26.3
BcaB05g21993 Brassica carinata HOM05D005720 ORTHO05D006984 2.7e-50 204.9 961 27.5
vmacro06589 Vaccinium macrocarpon HOM05D005720 ORTHO05D006984 1.5e-48 199.1 306 45.1
Sed0011275 Sechium edule HOM05D005720 ORTHO05D006984 2.5e-48 198.4 331 42.6
Psat0s2250g0040 Pisum sativum HOM05D005720 ORTHO05D006984 1.8e-46 192.2 405 38.3
TAR629G3278 Trochodendron aralioides HOM05D005720 ORTHO05D006984 8.4e-44 183.3 247 51.0
BraA10t43127Z Brassica rapa HOM05D005720 ORTHO05D006984 5.5e-43 180.6 313 40.3
MBI16_g03131_MAGBIO Magnolia biondii HOM05D005720 ORTHO05D006984 7.4e-24 117.1 351 32.8
Os01g0222300 Oryza sativa ssp. japonica HOM05D005720 ORTHO05D006984 1.3e-20 106.3 374 31.6
Lsat_1_v5_gn_5_90621 Lactuca sativa HOM05D005720 ORTHO05D006984 2.1e-18 99.0 180 37.8
SHI10812 Sapria himalayana HOM05D005720 ORTHO05D006984 2.6e-13 82.0 169 39.1
MSTRG.8687 Avicennia marina HOM05D005720 ORTHO05D006984 4.5e-13 81.3 138 44.2
SEGI_32546 Sequoiadendron giganteum HOM05D005720 ORTHO05D006984 2.1e-10 72.4 516 21.7
Lju188P3T29 Lonicera japonica HOM05D005720 ORTHO05D006984 1.8e-09 69.3 79 53.2
RcHm_v2.0_Chr1g0379741 Rosa chinensis HOM05D005720 ORTHO05D006984 3.0e-09 68.6 82 53.7
Actinidia30732 Actinidia chinensis HOM05D005720 ORTHO05D006984 9.7e-08 63.5 170 37.1


User provided reference genes

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