Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1077.18 Capsicum annuum HOM05D006048 ORTHO05D007642 0.0e+00 1964.1 1042 100.0
PGSC0003DMG401028588 Solanum tuberosum HOM05D006048 ORTHO05D007642 0.0e+00 1575.5 1094 78.0
Sopen01g042410 Solanum pennellii HOM05D006048 ORTHO05D007642 0.0e+00 1533.1 1096 76.5
Solyc01g098870.3 Solanum lycopersicum HOM05D006048 ORTHO05D007642 0.0e+00 1513.0 1096 75.8
Nitab4.5_0008677g0020 Nicotiana tabacum HOM05D006048 ORTHO05D007642 0.0e+00 1254.6 1137 64.1
Peaxi162Scf00037g00236 Petunia axillaris HOM05D006048 ORTHO05D007642 0.0e+00 1159.1 1113 62.8
Nitab4.5_0005388g0020 Nicotiana tabacum HOM05D006048 ORTHO05D007642 0.0e+00 1154.8 1129 60.5
Oeu017488.1 Olea europaea HOM05D006048 ORTHO05D007642 9.7e-134 482.3 651 46.1
Actinidia05707 Actinidia chinensis HOM05D006048 ORTHO05D007642 1.3e-133 481.9 1067 37.1
Hma1.2p1_0928F.1_g237870 Hydrangea macrophylla HOM05D006048 ORTHO05D007642 1.2e-128 465.3 1062 35.2
Actinidia23630 Actinidia chinensis HOM05D006048 ORTHO05D007642 7.9e-128 462.6 1067 36.2
CSS0040601 Camellia sinensis var. sinensis HOM05D006048 ORTHO05D007642 8.0e-120 436.0 671 41.7
Cc02_g33600 Coffea canephora HOM05D006048 ORTHO05D007642 2.8e-117 427.6 816 39.2
Migut.B01039 Erythranthe guttata HOM05D006048 ORTHO05D007642 1.9e-113 414.8 1048 33.6
Dinv23949 Davidia involucrata HOM05D006048 ORTHO05D007642 2.3e-111 407.9 1067 34.4
Cfa006579 Carpinus fangiana HOM05D006048 ORTHO05D007642 1.4e-108 398.7 1074 32.2
SalBow8G1366 Salvia bowleyana HOM05D006048 ORTHO05D007642 7.0e-108 396.4 1062 31.5
Haze_04204 Corylus avellana HOM05D006048 ORTHO05D007642 4.5e-107 393.7 1083 32.0
QL03p006882 Quercus lobata HOM05D006048 ORTHO05D007642 1.5e-105 388.7 1089 33.0
Rhsim07G0182400 Rhododendron simsii HOM05D006048 ORTHO05D007642 1.2e-104 385.6 1150 33.6
Ciclev10000202m.g Citrus clementina HOM05D006048 ORTHO05D007642 8.0e-104 382.9 1068 34.6
TWI56G0330 Tripterygium wilfordii HOM05D006048 ORTHO05D007642 8.8e-103 379.4 1100 31.7
GSVIVG01000040001 Vitis vinifera HOM05D006048 ORTHO05D007642 1.7e-101 375.2 1087 32.9
MSTRG.20430 Avicennia marina HOM05D006048 ORTHO05D007642 6.3e-101 373.2 1209 31.1
Duzib128G0698 Durio zibethinus HOM05D006048 ORTHO05D007642 1.4e-100 372.1 1075 31.4
FAN14G2795 Fragaria x ananassa HOM05D006048 ORTHO05D007642 1.8e-100 371.7 1077 33.0
FAN09G2502 Fragaria x ananassa HOM05D006048 ORTHO05D007642 2.4e-100 371.3 1091 33.1
Manes.09G166100 Manihot esculenta HOM05D006048 ORTHO05D007642 3.1e-100 370.9 1099 31.0
FAN14G2991 Fragaria x ananassa HOM05D006048 ORTHO05D007642 4.1e-100 370.5 1082 33.4
MD12G1220300 Malus domestica HOM05D006048 ORTHO05D007642 5.4e-100 370.2 1081 32.9
Potri.013G023600 Populus trichocarpa HOM05D006048 ORTHO05D007642 9.1e-100 369.4 1102 31.7
FvH4_6g05680 Fragaria vesca HOM05D006048 ORTHO05D007642 3.5e-99 367.5 1074 32.6
Sabra13G0025400 Salix brachista HOM05D006048 ORTHO05D007642 3.8e-98 364.0 1049 31.8
Potri.005G034100 Populus trichocarpa HOM05D006048 ORTHO05D007642 5.0e-98 363.6 1081 31.5
Prupe.6G327100 Prunus persica HOM05D006048 ORTHO05D007642 1.1e-97 362.5 1094 30.6
FAN02G2040 Fragaria x ananassa HOM05D006048 ORTHO05D007642 1.5e-97 362.1 1086 33.4
RcHm_v2.0_Chr3g0454571 Rosa chinensis HOM05D006048 ORTHO05D007642 1.5e-97 362.1 694 37.9
FAN05G1530 Fragaria x ananassa HOM05D006048 ORTHO05D007642 3.3e-97 360.9 1082 32.4
Thecc.05G304700 Theobroma cacao HOM05D006048 ORTHO05D007642 3.3e-97 360.9 1055 31.5
COL.COLO4_13482 Corchorus olitorius HOM05D006048 ORTHO05D007642 1.6e-96 358.6 708 35.3
MD04G1206500 Malus domestica HOM05D006048 ORTHO05D007642 3.6e-96 357.5 1085 34.6
Gohir.A11G264200 Gossypium hirsutum HOM05D006048 ORTHO05D007642 2.3e-95 354.8 1075 31.6
TAR636G0181 Trochodendron aralioides HOM05D006048 ORTHO05D007642 1.5e-94 352.1 1098 30.2
Gohir.D11G274400 Gossypium hirsutum HOM05D006048 ORTHO05D007642 9.8e-94 349.4 1067 31.0
Sabra05G0036000 Salix brachista HOM05D006048 ORTHO05D007642 4.1e-92 344.0 1101 30.6
TWI12G1173 Tripterygium wilfordii HOM05D006048 ORTHO05D007642 2.3e-90 338.2 1092 29.3
Gorai.007G296200 Gossypium raimondii HOM05D006048 ORTHO05D007642 5.0e-90 337.0 1068 30.8
PGR031G0290 Punica granatum HOM05D006048 ORTHO05D007642 6.1e-88 330.1 1119 30.1
ECA238G0871 Erigeron canadensis HOM05D006048 ORTHO05D007642 1.0e-87 329.3 770 34.3
CsaV3_2G005180 Cucumis sativus L. HOM05D006048 ORTHO05D007642 1.4e-87 328.9 1055 30.7
MELO3C004275.2 Cucumis melo HOM05D006048 ORTHO05D007642 1.4e-84 318.9 1069 30.3
FAN05G2734 Fragaria x ananassa HOM05D006048 ORTHO05D007642 3.2e-84 317.8 1053 31.3
HanXRQChr15g0463081 Helianthus annuus HOM05D006048 ORTHO05D007642 1.2e-83 315.8 1048 31.7
ClCG02G015880 Citrullus lanatus HOM05D006048 ORTHO05D007642 1.6e-83 315.5 1068 30.7
SGA_v2.0_scaffold172G38965 Striga asiatica HOM05D006048 ORTHO05D007642 1.6e-83 315.5 1190 29.8
Nn4g26237 Nelumbo nucifera HOM05D006048 ORTHO05D007642 1.0e-82 312.8 677 35.2
THA.LOC104820894 Tarenaya hassleriana HOM05D006048 ORTHO05D007642 2.5e-81 308.1 1072 29.6
Sc06g0003370 Simmondsia chinensis HOM05D006048 ORTHO05D007642 3.3e-81 307.8 1059 29.9
vmacro05021 Vaccinium macrocarpon HOM05D006048 ORTHO05D007642 4.7e-80 303.9 1079 29.4
Cpa.g.sc48.39 Carica papaya HOM05D006048 ORTHO05D007642 3.1e-79 301.2 1095 29.9
THA.LOC104805873 Tarenaya hassleriana HOM05D006048 ORTHO05D007642 1.3e-77 295.8 1060 29.0
Sed0020620 Sechium edule HOM05D006048 ORTHO05D007642 4.9e-77 293.9 1061 30.3
Nn1g02208 Nelumbo nucifera HOM05D006048 ORTHO05D007642 1.1e-76 292.7 747 32.1
EL10Ac4g09343 Beta vulgaris HOM05D006048 ORTHO05D007642 4.1e-76 290.8 518 37.5
AUR62005136 Chenopodium quinoa HOM05D006048 ORTHO05D007642 2.1e-75 288.5 615 33.3
AUR62000837 Chenopodium quinoa HOM05D006048 ORTHO05D007642 1.0e-74 286.2 727 32.0
Hund07062 Selenicereus undatus HOM05D006048 ORTHO05D007642 1.0e-74 286.2 1086 28.6
Lj5g0003009 Lotus japonicus HOM05D006048 ORTHO05D007642 6.6e-74 283.5 810 30.9
Medtr1g082840 Medicago truncatula HOM05D006048 ORTHO05D007642 1.5e-73 282.3 1089 28.3
Aqoxy2G03311 Aquilegia oxysepala HOM05D006048 ORTHO05D007642 1.4e-71 275.8 657 31.7
Glyma.10G155100 Glycine max HOM05D006048 ORTHO05D007642 1.4e-71 275.8 801 32.7
MBI19_g16658_MAGBIO Magnolia biondii HOM05D006048 ORTHO05D007642 1.8e-71 275.4 510 36.9
Lalb_Chr21g0310721 Lupinus albus HOM05D006048 ORTHO05D007642 4.0e-71 274.2 801 30.6
Ah.06g189270 Amaranthus hybridus HOM05D006048 ORTHO05D007642 8.9e-71 273.1 723 31.1
Glyma.20G233200 Glycine max HOM05D006048 ORTHO05D007642 3.4e-70 271.2 796 31.9
TPR.G6104 Trifolium pratense HOM05D006048 ORTHO05D007642 2.9e-69 268.1 1093 28.5
Lsat_1_v5_gn_2_64861 Lactuca sativa HOM05D006048 ORTHO05D007642 3.7e-69 267.7 686 31.9
Ca_10107_v3 Cicer arietinum L. HOM05D006048 ORTHO05D007642 1.4e-68 265.8 817 29.1
Eucgr.H04481 Eucalyptus grandis HOM05D006048 ORTHO05D007642 5.6e-65 253.8 1089 27.0
VMungo0720G0675 Vigna mungo HOM05D006048 ORTHO05D007642 2.1e-64 251.9 777 28.8
Lalb_Chr06g0167761 Lupinus albus HOM05D006048 ORTHO05D007642 8.1e-64 250.0 1034 26.8
Phvul.007G180600 Phaseolus vulgaris HOM05D006048 ORTHO05D007642 3.1e-63 248.1 1061 27.4
Aa31LG2G11800 Aethionema arabicum HOM05D006048 ORTHO05D007642 9.9e-62 243.0 771 29.6
A09p19290 Brassica napus HOM05D006048 ORTHO05D007642 1.2e-59 236.1 720 28.5
Carub.0002s0845 Capsella rubella HOM05D006048 ORTHO05D007642 1.2e-59 236.1 820 28.4
BcaB07g31106 Brassica carinata HOM05D006048 ORTHO05D007642 1.3e-58 232.6 778 28.3
CARHR284550 Cardamine hirsuta HOM05D006048 ORTHO05D007642 2.5e-57 228.4 949 27.3
Psat6g149640 Pisum sativum HOM05D006048 ORTHO05D007642 5.6e-57 227.3 1040 26.2
AT1G54920 Arabidopsis thaliana HOM05D006048 ORTHO05D007642 2.8e-56 224.9 797 28.7
AL1G65400 Arabidopsis lyrata HOM05D006048 ORTHO05D007642 4.7e-56 224.2 1093 26.5
BcaC04g22032 Brassica carinata HOM05D006048 ORTHO05D007642 4.7e-56 224.2 738 27.8
C09p24290 Brassica napus HOM05D006048 ORTHO05D007642 1.4e-55 222.6 733 27.7
BraA09t37546Z Brassica rapa HOM05D006048 ORTHO05D007642 3.1e-55 221.5 791 27.1
PSO302G0271 Papaver somniferum HOM05D006048 ORTHO05D007642 4.0e-55 221.1 392 34.7
BolC9t55346H Brassica oleracea HOM05D006048 ORTHO05D007642 1.2e-54 219.5 734 27.7
PSO170G0056 Papaver somniferum HOM05D006048 ORTHO05D007642 3.4e-54 218.0 393 34.9
ATR0626G180 Amborella trichopoda HOM05D006048 ORTHO05D007642 1.7e-53 215.7 371 35.0
SEGI_14627 Sequoiadendron giganteum HOM05D006048 ORTHO05D007642 5.6e-49 200.7 555 30.5
CDE05G2441 Ceratophyllum demersum HOM05D006048 ORTHO05D007642 1.6e-48 199.1 393 35.4
Os11g0148400 Oryza sativa ssp. japonica HOM05D006048 ORTHO05D007642 3.6e-48 198.0 531 29.8
Atru.chr2.428 Acer truncatum HOM05D006048 ORTHO05D007642 1.6e-43 182.6 183 48.1
Lj9A29T9 Lonicera japonica HOM05D006048 ORTHO05D007642 9.0e-39 166.8 326 36.2
HPP92_011281 Vanilla planifolia HOM05D006048 ORTHO05D007642 1.8e-34 152.5 388 30.4
HPP92_011303 Vanilla planifolia HOM05D006048 ORTHO05D007642 3.0e-34 151.8 389 30.6
Mapoly0011s0030 Marchantia polymorpha HOM05D006048 ORTHO05D007642 8.7e-34 150.2 222 34.2
Lj9A18T10 Lonicera japonica HOM05D006048 ORTHO05D007642 2.5e-33 148.7 841 28.5
Psat7g077840 Pisum sativum HOM05D006048 ORTHO05D007642 5.3e-31 141.0 176 40.9
CiPaw.07G016800 Carya illinoinensis HOM05D006048 ORTHO05D007642 1.5e-30 139.4 855 26.8
CDE05G0200 Ceratophyllum demersum HOM05D006048 ORTHO05D007642 4.2e-28 131.3 295 31.9
Atru.chr2.429 Acer truncatum HOM05D006048 ORTHO05D007642 1.6e-27 129.4 219 35.6
AagrBONN_evm.TU.Sc2ySwM_344.3982 Anthoceros agrestis HOM05D006048 ORTHO05D007642 4.8e-24 117.9 680 24.0
Manes.08G121600 Manihot esculenta HOM05D006048 ORTHO05D007642 3.1e-23 115.2 785 24.7
MBI19_g40207_MAGBIO Magnolia biondii HOM05D006048 ORTHO05D007642 1.5e-22 112.8 262 31.3
CiPaw.08G165500 Carya illinoinensis HOM05D006048 ORTHO05D007642 1.6e-19 102.8 78 55.1
Actinidia01443 Actinidia chinensis HOM05D006048 ORTHO05D007642 6.3e-16 90.9 191 34.6
SMO203G0156 Selaginella moellendorffii HOM05D006048 ORTHO05D007642 8.8e-10 70.5 185 27.6
Atru.chr2.431 Acer truncatum HOM05D006048 ORTHO05D007642 4.8e-08 64.7 133 38.3
MBI12_g31451_MAGBIO Magnolia biondii HOM05D006048 ORTHO05D007642 7.7e-06 57.4 98 33.7


User provided reference genes

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