Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1075.9 Capsicum annuum HOM05D005407 ORTHO05D006544 6.1e-148 527.7 318 100.0
Sopen02g037270 Solanum pennellii HOM05D005407 ORTHO05D006544 7.8e-103 377.9 321 72.6
Solyc02g092720.1 Solanum lycopersicum HOM05D005407 ORTHO05D006544 3.6e-100 369.0 320 70.3
PGSC0003DMG400024943 Solanum tuberosum HOM05D005407 ORTHO05D006544 3.8e-97 359.0 321 73.8
Nitab4.5_0003878g0070 Nicotiana tabacum HOM05D005407 ORTHO05D006544 2.1e-92 343.2 306 68.0
Nitab4.5_0007941g0010 Nicotiana tabacum HOM05D005407 ORTHO05D006544 6.2e-92 341.7 307 66.1
Peaxi162Scf00264g00321 Petunia axillaris HOM05D005407 ORTHO05D006544 7.0e-59 231.9 291 58.4
Dinv26896 Davidia involucrata HOM05D005407 ORTHO05D006544 2.5e-56 223.4 317 48.3
Oeu040602.1 Olea europaea HOM05D005407 ORTHO05D006544 5.9e-50 202.2 313 50.8
Peaxi162Scf00365g00076 Petunia axillaris HOM05D005407 ORTHO05D006544 5.2e-46 189.1 299 49.8
MSTRG.2839 Avicennia marina HOM05D005407 ORTHO05D006544 1.5e-40 171.0 313 45.4
Nn5g30501 Nelumbo nucifera HOM05D005407 ORTHO05D006544 4.2e-40 169.5 314 39.5
TAR628G1677 Trochodendron aralioides HOM05D005407 ORTHO05D006544 1.2e-37 161.4 319 41.4
Actinidia21238 Actinidia chinensis HOM05D005407 ORTHO05D006544 3.4e-37 159.8 296 38.5
Lsat_1_v5_gn_4_162000 Lactuca sativa HOM05D005407 ORTHO05D006544 2.8e-36 156.8 288 44.1
MSTRG.23698 Avicennia marina HOM05D005407 ORTHO05D006544 1.8e-35 154.1 322 40.7
HanXRQChr12g0373231 Helianthus annuus HOM05D005407 ORTHO05D006544 2.7e-34 150.2 299 40.8
Ciclev10025829m.g Citrus clementina HOM05D005407 ORTHO05D006544 3.5e-34 149.8 354 41.0
GSVIVG01000158001 Vitis vinifera HOM05D005407 ORTHO05D006544 3.5e-34 149.8 300 42.3
Duzib264G0474 Durio zibethinus HOM05D005407 ORTHO05D006544 1.3e-33 147.9 362 34.5
MSTRG.3457 Avicennia marina HOM05D005407 ORTHO05D006544 1.7e-33 147.5 311 39.9
Duzib187G0216 Durio zibethinus HOM05D005407 ORTHO05D006544 5.0e-33 146.0 361 39.1
SalBow1G5175 Salvia bowleyana HOM05D005407 ORTHO05D006544 1.5e-32 144.4 295 40.0
Gohir.A11G217700 Gossypium hirsutum HOM05D005407 ORTHO05D006544 9.5e-32 141.7 331 40.2
Dinv30062 Davidia involucrata HOM05D005407 ORTHO05D006544 1.6e-31 141.0 275 46.2
Gohir.A02G153500 Gossypium hirsutum HOM05D005407 ORTHO05D006544 3.6e-31 139.8 308 37.3
Manes.13G114000 Manihot esculenta HOM05D005407 ORTHO05D006544 4.7e-31 139.4 333 40.2
Cc07_g06740 Coffea canephora HOM05D005407 ORTHO05D006544 8.0e-31 138.7 304 38.5
Nn1g04631 Nelumbo nucifera HOM05D005407 ORTHO05D006544 1.4e-30 137.9 298 36.2
Lsat_1_v5_gn_3_87740 Lactuca sativa HOM05D005407 ORTHO05D006544 6.8e-30 135.6 275 36.0
SGA_v2.0_scaffold15G07407 Striga asiatica HOM05D005407 ORTHO05D006544 1.5e-29 134.4 299 36.5
Gorai.003G028600 Gossypium raimondii HOM05D005407 ORTHO05D006544 2.6e-29 133.7 310 37.1
Gorai.007G220900 Gossypium raimondii HOM05D005407 ORTHO05D006544 2.6e-29 133.7 330 40.0
PSO541G0358 Papaver somniferum HOM05D005407 ORTHO05D006544 2.6e-29 133.7 335 35.2
Gohir.D03G026900 Gossypium hirsutum HOM05D005407 ORTHO05D006544 5.7e-29 132.5 310 36.8
Gohir.D11G205800 Gossypium hirsutum HOM05D005407 ORTHO05D006544 5.7e-29 132.5 330 39.4
PSO675G4008 Papaver somniferum HOM05D005407 ORTHO05D006544 6.3e-28 129.0 345 34.8
Glyma.05G103000 Glycine max HOM05D005407 ORTHO05D006544 1.1e-27 128.3 331 37.5
SGA_v2.0_scaffold143G35780 Striga asiatica HOM05D005407 ORTHO05D006544 1.1e-27 128.3 280 39.6
Gorai.008G080000 Gossypium raimondii HOM05D005407 ORTHO05D006544 1.8e-27 127.5 335 34.3
Duzib147G1232 Durio zibethinus HOM05D005407 ORTHO05D006544 9.2e-27 125.2 361 37.1
CiPaw.02G004700 Carya illinoinensis HOM05D005407 ORTHO05D006544 1.6e-26 124.4 344 34.0
Cpa.g.sc6.55 Carica papaya HOM05D005407 ORTHO05D006544 5.9e-26 122.5 332 33.1
Gohir.A12G074500 Gossypium hirsutum HOM05D005407 ORTHO05D006544 5.9e-26 122.5 335 33.7
Potri.005G145100 Populus trichocarpa HOM05D005407 ORTHO05D006544 1.3e-25 121.3 353 31.2
QL06p039956 Quercus lobata HOM05D005407 ORTHO05D006544 2.3e-25 120.6 330 38.8
Glyma.17G164300 Glycine max HOM05D005407 ORTHO05D006544 2.9e-25 120.2 337 36.5
Solyc03g150114.1 Solanum lycopersicum HOM05D005407 ORTHO05D006544 5.0e-25 119.4 198 40.4
Actinidia32821 Actinidia chinensis HOM05D005407 ORTHO05D006544 6.6e-25 119.0 328 33.2
CsaV3_6G043820 Cucumis sativus L. HOM05D005407 ORTHO05D006544 8.6e-25 118.6 310 35.5
CiPaw.01G007800 Carya illinoinensis HOM05D005407 ORTHO05D006544 1.5e-24 117.9 324 34.3
MD15G1292600 Malus domestica HOM05D005407 ORTHO05D006544 3.3e-24 116.7 349 33.0
unitig_52.g17607 Utricularia gibba HOM05D005407 ORTHO05D006544 3.3e-24 116.7 292 34.9
Haze_15320 Corylus avellana HOM05D005407 ORTHO05D006544 4.3e-24 116.3 318 33.0
Aqoxy6G02765 Aquilegia oxysepala HOM05D005407 ORTHO05D006544 5.6e-24 115.9 189 42.3
Lj4g0004383 Lotus japonicus HOM05D005407 ORTHO05D006544 5.6e-24 115.9 321 33.3
Gohir.D12G072700 Gossypium hirsutum HOM05D005407 ORTHO05D006544 7.3e-24 115.5 340 32.9
Thecc.01G067900 Theobroma cacao HOM05D005407 ORTHO05D006544 1.6e-23 114.4 367 34.6
Glyma.11G050800 Glycine max HOM05D005407 ORTHO05D006544 3.6e-23 113.2 307 34.9
VMungo1011G0001 Vigna mungo HOM05D005407 ORTHO05D006544 4.7e-23 112.8 323 34.7
CANSAT01G3084 Cannabis sativa HOM05D005407 ORTHO05D006544 6.1e-23 112.5 333 30.9
DCAR_021471 Daucus carota HOM05D005407 ORTHO05D006544 6.1e-23 112.5 314 37.9
Potri.007G051800 Populus trichocarpa HOM05D005407 ORTHO05D006544 8.0e-23 112.1 346 30.9
unitig_62.g23420 Utricularia gibba HOM05D005407 ORTHO05D006544 4.0e-22 109.8 276 35.5
Sed0008783 Sechium edule HOM05D005407 ORTHO05D006544 8.9e-22 108.6 292 34.6
ClCG01G017290 Citrullus lanatus HOM05D005407 ORTHO05D006544 1.5e-21 107.8 332 31.3
Sabra07G0045500 Salix brachista HOM05D005407 ORTHO05D006544 2.0e-21 107.5 349 30.9
TPR.G23890 Trifolium pratense HOM05D005407 ORTHO05D006544 2.6e-21 107.1 315 33.3
Phvul.002G013600 Phaseolus vulgaris HOM05D005407 ORTHO05D006544 3.4e-21 106.7 306 35.0
Sabra05G0114800 Salix brachista HOM05D005407 ORTHO05D006544 3.4e-21 106.7 210 38.6
Sabra05G0115900 Salix brachista HOM05D005407 ORTHO05D006544 3.4e-21 106.7 210 38.6
MELO3C007607.2 Cucumis melo HOM05D005407 ORTHO05D006544 7.5e-21 105.5 308 31.5
Cfa004094 Carpinus fangiana HOM05D005407 ORTHO05D006544 1.3e-20 104.8 324 32.1
Glyma.01G191400 Glycine max HOM05D005407 ORTHO05D006544 1.3e-20 104.8 314 32.8
VMungo1215G1030 Vigna mungo HOM05D005407 ORTHO05D006544 3.7e-20 103.2 314 33.1
Lj2g0008966 Lotus japonicus HOM05D005407 ORTHO05D006544 6.4e-20 102.4 321 30.8
MD02G1181700 Malus domestica HOM05D005407 ORTHO05D006544 6.4e-20 102.4 350 34.0
HanXRQChr11g0322471 Helianthus annuus HOM05D005407 ORTHO05D006544 8.3e-20 102.1 313 35.1
Atru.chr3.207 Acer truncatum HOM05D005407 ORTHO05D006544 1.4e-19 101.3 291 38.1
Sp2g29310 Schrenkiella parvula HOM05D005407 ORTHO05D006544 1.4e-19 101.3 288 39.2
arahy.Tifrunner.gnm1.ann1.UV71K9 Arachis hypogaea HOM05D005407 ORTHO05D006544 2.4e-19 100.5 321 31.5
BcaC04g19788 Brassica carinata HOM05D005407 ORTHO05D006544 3.2e-19 100.1 288 38.9
C09p51650 Brassica napus HOM05D005407 ORTHO05D006544 3.2e-19 100.1 288 38.9
BolC9t58026H Brassica oleracea HOM05D005407 ORTHO05D006544 3.2e-19 100.1 288 38.9
Oeu054177.1 Olea europaea HOM05D005407 ORTHO05D006544 3.2e-19 100.1 177 40.1
Rhsim08G0096100 Rhododendron simsii HOM05D005407 ORTHO05D006544 3.2e-19 100.1 264 38.3
arahy.Tifrunner.gnm1.ann1.IRX7P6 Arachis hypogaea HOM05D005407 ORTHO05D006544 4.1e-19 99.8 320 33.8
Nitab4.5_0000419g0140 Nicotiana tabacum HOM05D005407 ORTHO05D006544 9.2e-19 98.6 272 40.4
TWI09G0600 Tripterygium wilfordii HOM05D005407 ORTHO05D006544 9.2e-19 98.6 295 32.2
Gohir.A10G090300 Gossypium hirsutum HOM05D005407 ORTHO05D006544 4.6e-18 96.3 268 32.8
Psat4g083080 Pisum sativum HOM05D005407 ORTHO05D006544 6.0e-18 95.9 320 33.4
TWI53G1118 Tripterygium wilfordii HOM05D005407 ORTHO05D006544 2.3e-17 94.0 317 30.0
A09p09420 Brassica napus HOM05D005407 ORTHO05D006544 3.0e-17 93.6 286 38.5
BraA09t36591Z Brassica rapa HOM05D005407 ORTHO05D006544 6.6e-17 92.4 286 37.1
Gorai.011G107400 Gossypium raimondii HOM05D005407 ORTHO05D006544 6.6e-17 92.4 266 33.8
Gohir.D10G097800 Gossypium hirsutum HOM05D005407 ORTHO05D006544 8.6e-17 92.0 267 33.0
Migut.H00374 Erythranthe guttata HOM05D005407 ORTHO05D006544 1.9e-16 90.9 313 37.7
FAN26G3453 Fragaria x ananassa HOM05D005407 ORTHO05D006544 3.3e-16 90.1 361 29.4
PGR004G2820 Punica granatum HOM05D005407 ORTHO05D006544 7.3e-16 89.0 341 37.2
FAN19G1545 Fragaria x ananassa HOM05D005407 ORTHO05D006544 1.2e-15 88.2 361 29.4
FvH4_1g17130 Fragaria vesca HOM05D005407 ORTHO05D006544 1.6e-15 87.8 361 29.4
EL10Ac6g15663 Beta vulgaris HOM05D005407 ORTHO05D006544 3.6e-15 86.7 363 27.8
THA.LOC104827519 Tarenaya hassleriana HOM05D005407 ORTHO05D006544 6.2e-15 85.9 319 33.5
Aa31LG1G15900 Aethionema arabicum HOM05D005407 ORTHO05D006544 8.0e-15 85.5 241 36.1
FAN23G2725 Fragaria x ananassa HOM05D005407 ORTHO05D006544 8.0e-15 85.5 360 28.6
Eucgr.I00726 Eucalyptus grandis HOM05D005407 ORTHO05D006544 1.1e-14 85.1 342 29.5
BcaB04g20064 Brassica carinata HOM05D005407 ORTHO05D006544 4.0e-14 83.2 287 38.3
Prupe.6G224800 Prunus persica HOM05D005407 ORTHO05D006544 6.8e-14 82.4 353 28.9
Thhalv10005384m.g Eutrema salsugineum HOM05D005407 ORTHO05D006544 2.0e-13 80.9 291 33.7
Nitab4.5_0005127g0050 Nicotiana tabacum HOM05D005407 ORTHO05D006544 4.4e-13 79.7 93 51.6
RcHm_v2.0_Chr2g0107301 Rosa chinensis HOM05D005407 ORTHO05D006544 5.8e-13 79.3 352 29.3
FAN28G2899 Fragaria x ananassa HOM05D005407 ORTHO05D006544 7.5e-13 79.0 358 27.1
Manes.12G112400 Manihot esculenta HOM05D005407 ORTHO05D006544 7.5e-13 79.0 330 32.1
Lalb_Chr16g0389101 Lupinus albus HOM05D005407 ORTHO05D006544 1.7e-12 77.8 190 34.2
HPP92_007853 Vanilla planifolia HOM05D005407 ORTHO05D006544 6.4e-12 75.9 300 28.7
Carub.0008s2714 Capsella rubella HOM05D005407 ORTHO05D006544 1.4e-11 74.7 181 34.8
C09p11100 Brassica napus HOM05D005407 ORTHO05D006544 7.0e-11 72.4 177 35.6
TAR376G1145 Trochodendron aralioides HOM05D005407 ORTHO05D006544 9.2e-11 72.0 216 31.9
CARHR280260 Cardamine hirsuta HOM05D005407 ORTHO05D006544 1.6e-10 71.2 286 28.7
AT5G67350 Arabidopsis thaliana HOM05D005407 ORTHO05D006544 2.7e-10 70.5 288 34.0
AL8G43980 Arabidopsis lyrata HOM05D005407 ORTHO05D006544 3.5e-10 70.1 292 29.1
CSS0012811 Camellia sinensis var. sinensis HOM05D005407 ORTHO05D006544 3.5e-10 70.1 348 31.0
BolC9t53999H Brassica oleracea HOM05D005407 ORTHO05D006544 4.6e-10 69.7 293 34.1
Phvul.003G237500 Phaseolus vulgaris HOM05D005407 ORTHO05D006544 1.0e-09 68.6 319 30.1
A07p16540 Brassica napus HOM05D005407 ORTHO05D006544 1.3e-09 68.2 172 34.3
BraA07t29378Z Brassica rapa HOM05D005407 ORTHO05D006544 1.3e-09 68.2 172 34.3
ATR0661G396 Amborella trichopoda HOM05D005407 ORTHO05D006544 2.3e-09 67.4 283 30.7
BolC7t42952H Brassica oleracea HOM05D005407 ORTHO05D006544 3.9e-09 66.6 291 34.4
CDE04G2817 Ceratophyllum demersum HOM05D005407 ORTHO05D006544 6.6e-09 65.9 296 32.1
Medtr4g095320 Medicago truncatula HOM05D005407 ORTHO05D006544 1.1e-08 65.1 334 29.0
HanXRQChr12g0377191 Helianthus annuus HOM05D005407 ORTHO05D006544 1.5e-08 64.7 286 25.9
BcaC04g23209 Brassica carinata HOM05D005407 ORTHO05D006544 2.5e-08 63.9 290 33.8
Nitab4.5_0005127g0030 Nicotiana tabacum HOM05D005407 ORTHO05D006544 2.5e-08 63.9 128 49.2
vmacro17985 Vaccinium macrocarpon HOM05D005407 ORTHO05D006544 2.5e-08 63.9 122 38.5
CDE07G1425 Ceratophyllum demersum HOM05D006600 ORTHO05D008446 5.6e-08 62.8 304 30.6
CDE02G0512 Ceratophyllum demersum HOM05D042405 ORTHO05D043904 9.5e-08 62.0 336 25.9
Sed0011473 Sechium edule HOM05D005407 ORTHO05D006544 1.2e-07 61.6 314 27.4
Ah.02g125610 Amaranthus hybridus HOM05D005407 ORTHO05D006544 2.1e-07 60.8 163 37.4


User provided reference genes

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