Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1075.22 Capsicum annuum HOM05D004306 ORTHO05D005055 6.6e-284 979.9 465 100.0
PGSC0003DMG400024965 Solanum tuberosum HOM05D004306 ORTHO05D005055 4.5e-256 887.5 459 90.4
Solyc02g092530.4 Solanum lycopersicum HOM05D004306 ORTHO05D005055 1.7e-255 885.6 459 90.2
Nitab4.5_0006069g0040 Nicotiana tabacum HOM05D004306 ORTHO05D005055 4.9e-255 884.0 508 84.1
Sopen02g037110 Solanum pennellii HOM05D004306 ORTHO05D005055 2.7e-253 878.2 456 89.9
Nitab4.5_0000651g0100 Nicotiana tabacum HOM05D004306 ORTHO05D005055 1.3e-252 875.9 526 81.6
Peaxi162Scf00264g00117 Petunia axillaris HOM05D004306 ORTHO05D005055 6.4e-247 857.1 451 88.5
Dinv26913 Davidia involucrata HOM05D004306 ORTHO05D005055 8.7e-244 846.7 444 88.5
Actinidia11991 Actinidia chinensis HOM05D004306 ORTHO05D005055 4.3e-243 844.3 444 87.6
ECA238G2426 Erigeron canadensis HOM05D004306 ORTHO05D005055 1.3e-242 842.8 444 88.5
HanXRQChr14g0449471 Helianthus annuus HOM05D004306 ORTHO05D005055 4.8e-242 840.9 443 89.2
Migut.L00204 Erythranthe guttata HOM05D004306 ORTHO05D005055 1.8e-241 839.0 450 86.4
Cpa.g.sc6.39 Carica papaya HOM05D004306 ORTHO05D005055 3.8e-239 831.2 443 86.7
Gohir.D11G207000 Gossypium hirsutum HOM05D004306 ORTHO05D005055 4.9e-239 830.9 448 86.8
Gohir.A11G216400 Gossypium hirsutum HOM05D004306 ORTHO05D005055 1.9e-238 828.9 442 87.6
Lsat_1_v5_gn_2_82860 Lactuca sativa HOM05D004306 ORTHO05D005055 2.5e-238 828.6 443 87.1
Oeu014230.2 Olea europaea HOM05D004306 ORTHO05D005055 3.2e-238 828.2 448 84.6
Thecc.01G070200 Theobroma cacao HOM05D004306 ORTHO05D005055 3.2e-238 828.2 448 85.3
MD15G1294800 Malus domestica HOM05D004306 ORTHO05D005055 5.5e-238 827.4 444 85.1
Lj4A160T62 Lonicera japonica HOM05D004306 ORTHO05D005055 2.1e-237 825.5 442 87.1
Duzib264G0002 Durio zibethinus HOM05D004306 ORTHO05D005055 7.9e-237 823.5 448 85.3
Atru.chr3.158 Acer truncatum HOM05D004306 ORTHO05D005055 1.0e-236 823.2 448 85.5
Atru.chr3.187 Acer truncatum HOM05D004306 ORTHO05D005055 1.0e-236 823.2 448 85.5
CSS0001342 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 5.1e-236 820.8 443 85.8
CsaV3_6G043980 Cucumis sativus L. HOM05D004306 ORTHO05D005055 5.1e-236 820.8 444 84.9
Phvul.003G236000 Phaseolus vulgaris HOM05D004306 ORTHO05D005055 8.7e-236 820.1 444 85.1
FvH4_1g17390 Fragaria vesca HOM05D004306 ORTHO05D005055 1.1e-235 819.7 449 84.0
TPR.G23896 Trifolium pratense HOM05D004306 ORTHO05D005055 1.9e-235 818.9 448 84.8
Oeu040626.2 Olea europaea HOM05D004306 ORTHO05D005055 2.5e-235 818.5 448 84.2
TWI09G0703 Tripterygium wilfordii HOM05D004306 ORTHO05D005055 2.5e-235 818.5 444 85.1
Duzib187G0102 Durio zibethinus HOM05D004306 ORTHO05D005055 4.3e-235 817.8 448 84.4
Potri.005G145400 Populus trichocarpa HOM05D004306 ORTHO05D005055 8.2e-234 813.5 448 84.2
Aqoxy6G02701 Aquilegia oxysepala HOM05D004306 ORTHO05D005055 1.1e-233 813.1 448 83.5
CiPaw.02G003700 Carya illinoinensis HOM05D004306 ORTHO05D005055 1.1e-233 813.1 448 84.4
TAR628G0028 Trochodendron aralioides HOM05D004306 ORTHO05D005055 1.1e-233 813.1 442 85.3
Ca_13922_v3 Cicer arietinum L. HOM05D004306 ORTHO05D005055 1.8e-233 812.4 448 83.7
PSO541G4466 Papaver somniferum HOM05D004306 ORTHO05D005055 3.1e-233 811.6 448 83.9
Hund13938 Selenicereus undatus HOM05D004306 ORTHO05D005055 4.1e-233 811.2 482 79.7
MSTRG.15357 Avicennia marina HOM05D004306 ORTHO05D005055 5.3e-233 810.8 443 84.4
VMungo0251G0785 Vigna mungo HOM05D004306 ORTHO05D005055 9.0e-233 810.1 448 84.2
GSVIVG01000140001 Vitis vinifera HOM05D004306 ORTHO05D005055 1.2e-232 809.7 443 85.3
Cc07_g06920 Coffea canephora HOM05D004306 ORTHO05D005055 1.5e-232 809.3 443 84.4
Gorai.007G222100 Gossypium raimondii HOM05D004306 ORTHO05D005055 1.5e-232 809.3 443 86.2
Eucgr.H02295 Eucalyptus grandis HOM05D004306 ORTHO05D005055 2.0e-232 808.9 443 84.4
CANSAT01G0675 Cannabis sativa HOM05D004306 ORTHO05D005055 2.6e-232 808.5 447 83.2
Lalb_Chr16g0389191 Lupinus albus HOM05D004306 ORTHO05D005055 2.6e-232 808.5 447 84.3
Medtr4g095660 Medicago truncatula HOM05D004306 ORTHO05D005055 4.5e-232 807.7 447 83.9
Manes.12G110500 Manihot esculenta HOM05D004306 ORTHO05D005055 1.0e-231 806.6 443 84.9
Rhsim10G0101200 Rhododendron simsii HOM05D004306 ORTHO05D005055 1.7e-231 805.8 443 84.4
AUR62040257 Chenopodium quinoa HOM05D004306 ORTHO05D005055 3.8e-231 804.7 444 84.0
PGR102G2907 Punica granatum HOM05D004306 ORTHO05D005055 3.8e-231 804.7 443 84.7
SalBow5G1134 Salvia bowleyana HOM05D004306 ORTHO05D005055 3.8e-231 804.7 443 83.7
SGA_v2.0_scaffold21G09395 Striga asiatica HOM05D004306 ORTHO05D005055 6.5e-231 803.9 443 83.1
GSVIVG01000137001 Vitis vinifera HOM05D004306 ORTHO05D005055 1.1e-230 803.1 443 84.9
SalBow5G1710 Salvia bowleyana HOM05D004306 ORTHO05D005055 1.4e-230 802.7 443 83.5
AUR62003989 Chenopodium quinoa HOM05D004306 ORTHO05D005055 4.2e-230 801.2 443 83.7
GSVIVG01000135001 Vitis vinifera HOM05D004306 ORTHO05D005055 4.2e-230 801.2 443 84.4
Cfa004112 Carpinus fangiana HOM05D004306 ORTHO05D005055 5.5e-230 800.8 443 83.3
Prupe.6G223000 Prunus persica HOM05D004306 ORTHO05D005055 2.7e-229 798.5 443 83.1
Nn1g04599 Nelumbo nucifera HOM05D004306 ORTHO05D005055 4.6e-229 797.7 443 82.6
MBI16_g09132_MAGBIO Magnolia biondii HOM05D004306 ORTHO05D005055 6.1e-229 797.3 442 84.8
FAN28G1176 Fragaria x ananassa HOM05D004306 ORTHO05D005055 1.8e-228 795.8 443 82.4
FAN23G0931 Fragaria x ananassa HOM05D004306 ORTHO05D005055 2.3e-228 795.4 443 82.4
Carub.0007s0271 Capsella rubella HOM05D004306 ORTHO05D005055 3.0e-228 795.0 443 82.8
ClCG01G017440 Citrullus lanatus HOM05D004306 ORTHO05D005055 3.9e-228 794.7 443 83.3
FAN26G3311 Fragaria x ananassa HOM05D004306 ORTHO05D005055 8.8e-228 793.5 443 82.4
Thhalv10025180m.g Eutrema salsugineum HOM05D004306 ORTHO05D005055 1.1e-227 793.1 443 82.8
CARHR245950 Cardamine hirsuta HOM05D004306 ORTHO05D005055 1.5e-227 792.7 443 82.8
Haze_15301 Corylus avellana HOM05D004306 ORTHO05D005055 1.5e-227 792.7 523 73.2
AL7G13210 Arabidopsis lyrata HOM05D004306 ORTHO05D005055 2.0e-227 792.3 448 81.7
Glyma.17G161900 Glycine max HOM05D004306 ORTHO05D005055 2.0e-227 792.3 443 83.5
Sed0025668 Sechium edule HOM05D004306 ORTHO05D005055 2.5e-227 792.0 443 82.6
Aa31LG6G14430 Aethionema arabicum HOM05D004306 ORTHO05D005055 9.7e-227 790.0 447 82.3
Thhalv10025178m.g Eutrema salsugineum HOM05D004306 ORTHO05D005055 1.7e-226 789.3 448 81.5
BolC1t00152H Brassica oleracea HOM05D004306 ORTHO05D005055 2.8e-226 788.5 443 82.4
C01p01570 Brassica napus HOM05D004306 ORTHO05D005055 6.3e-226 787.3 443 82.4
FAN19G2263 Fragaria x ananassa HOM05D004306 ORTHO05D005055 1.1e-225 786.6 453 80.6
AL7G13200 Arabidopsis lyrata HOM05D004306 ORTHO05D005055 1.8e-225 785.8 448 81.2
Lj4g0006645 Lotus japonicus HOM05D004306 ORTHO05D005055 2.4e-225 785.4 443 83.3
A01p01390 Brassica napus HOM05D004306 ORTHO05D005055 3.1e-225 785.0 443 82.2
BraA01t00135Z Brassica rapa HOM05D004306 ORTHO05D005055 3.1e-225 785.0 443 82.2
Ciclev10025794m.g Citrus clementina HOM05D004306 ORTHO05D005055 4.1e-225 784.6 443 82.6
CARHR245960 Cardamine hirsuta HOM05D004306 ORTHO05D005055 5.3e-225 784.3 448 80.8
Sp7g35230 Schrenkiella parvula HOM05D004306 ORTHO05D005055 1.5e-224 782.7 443 81.7
THA.LOC104819873 Tarenaya hassleriana HOM05D004306 ORTHO05D005055 2.0e-224 782.3 479 77.9
AT4G37550 Arabidopsis thaliana HOM05D004306 ORTHO05D005055 3.4e-224 781.6 448 80.8
AT4G37560 Arabidopsis thaliana HOM05D004306 ORTHO05D005055 3.4e-224 781.6 447 81.4
CDE04G2054 Ceratophyllum demersum HOM05D004306 ORTHO05D005055 3.4e-224 781.6 445 82.7
Sp7g35240 Schrenkiella parvula HOM05D004306 ORTHO05D005055 5.9e-224 780.8 448 80.6
Lj4g0023143 Lotus japonicus HOM05D004306 ORTHO05D005055 6.5e-223 777.3 442 82.1
arahy.Tifrunner.gnm1.ann1.GV60EB Arachis hypogaea HOM05D004306 ORTHO05D005055 1.1e-222 776.5 442 81.9
Sabra05G0116200 Salix brachista HOM05D004306 ORTHO05D005055 2.7e-221 771.9 494 74.7
EL10Ac6g15639 Beta vulgaris HOM05D004306 ORTHO05D005055 7.9e-221 770.4 443 81.7
BraA01t00136Z Brassica rapa HOM05D004306 ORTHO05D005055 1.0e-220 770.0 443 81.0
Zm00001eb370290 Zea mays HOM05D004306 ORTHO05D005055 1.4e-220 769.6 455 77.6
A01p01400 Brassica napus HOM05D004306 ORTHO05D005055 8.8e-220 766.9 443 80.4
RcHm_v2.0_Chr2g0107581 Rosa chinensis HOM05D004306 ORTHO05D005055 3.3e-219 765.0 449 79.5
BolC1t00153H Brassica oleracea HOM05D004306 ORTHO05D005055 4.4e-219 764.6 443 79.9
BcaNung05904 Brassica carinata HOM05D004306 ORTHO05D005055 5.7e-219 764.2 443 79.9
C01p01580 Brassica napus HOM05D004306 ORTHO05D005055 5.7e-219 764.2 443 79.9
Os01g0764900 Oryza sativa ssp. japonica HOM05D004306 ORTHO05D005055 2.8e-218 761.9 443 78.3
vmacro05397 Vaccinium macrocarpon HOM05D004306 ORTHO05D005055 1.2e-216 756.5 442 80.8
DCAR_025786 Daucus carota HOM05D004306 ORTHO05D005055 1.7e-215 752.7 443 80.8
BcaNung05906 Brassica carinata HOM05D004306 ORTHO05D005055 8.5e-215 750.4 443 79.7
unitig_748.g8394 Utricularia gibba HOM05D004306 ORTHO05D005055 4.2e-214 748.0 443 77.9
Hma1.2p1_0730F.1_g209845 Hydrangea macrophylla HOM05D004306 ORTHO05D005055 2.1e-213 745.7 442 79.9
CSS0047878 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 7.4e-211 737.3 443 78.8
MELO3C007621.2 Cucumis melo HOM05D004306 ORTHO05D005055 8.2e-210 733.8 415 82.9
BcaNung05905 Brassica carinata HOM05D004306 ORTHO05D005055 5.9e-208 727.6 443 77.4
SMO141G0231 Selaginella moellendorffii HOM05D004306 ORTHO05D005055 2.7e-205 718.8 441 74.8
Cre16.g691750 Chlamydomonas reinhardtii HOM05D004306 ORTHO05D005055 3.5e-200 701.8 445 73.0
Psat0ss839g0200 Pisum sativum HOM05D004306 ORTHO05D005055 1.3e-199 699.9 374 87.2
Pp3c3_32950 Physcomitrium patens HOM05D004306 ORTHO05D005055 5.0e-199 698.0 442 72.9
Cfa004110 Carpinus fangiana HOM05D004306 ORTHO05D005055 4.0e-196 688.3 459 72.8
Ah.02g125510 Amaranthus hybridus HOM05D004306 ORTHO05D005055 2.1e-189 666.0 447 72.0
HPP92_014148 Vanilla planifolia HOM05D004306 ORTHO05D005055 8.0e-189 664.1 383 79.4
ATR0019G017 Amborella trichopoda HOM05D004306 ORTHO05D005055 9.8e-187 657.1 377 79.3
CSS0039286 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 1.2e-184 650.2 448 70.5
Sc16g0000120 Simmondsia chinensis HOM05D004306 ORTHO05D005055 6.2e-173 611.3 330 87.0
CSS0041574 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 2.4e-169 599.4 447 66.9
HPP92_014166 Vanilla planifolia HOM05D004306 ORTHO05D005055 1.8e-156 556.6 428 65.0
arahy.Tifrunner.gnm1.ann1.HR4B5C Arachis hypogaea HOM05D004306 ORTHO05D005055 1.7e-151 540.0 294 86.1
Sc16g0000140 Simmondsia chinensis HOM05D004306 ORTHO05D005055 1.9e-150 536.6 295 85.4
Zm00001eb152190 Zea mays HOM05D004306 ORTHO05D005055 3.6e-149 532.3 316 76.6
COL.COLO4_11552 Corchorus olitorius HOM05D004306 ORTHO05D005055 6.9e-148 528.1 460 61.1
Oeu013288.2 Olea europaea HOM05D004306 ORTHO05D005055 9.6e-142 507.7 444 60.1
DCAR_025787 Daucus carota HOM05D004306 ORTHO05D005055 2.0e-139 500.0 283 81.6
SMO170G0023 Selaginella moellendorffii HOM05D004306 ORTHO05D005055 5.9e-123 445.3 374 58.6
SEGI_32720 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 1.6e-117 427.2 295 67.5
ATR0019G021 Amborella trichopoda HOM05D004306 ORTHO05D005055 9.4e-97 358.2 275 63.3
MD00G1015700 Malus domestica HOM05D004306 ORTHO05D005055 5.3e-92 342.4 195 76.9
DCAR_000330 Daucus carota HOM05D004306 ORTHO05D005055 1.2e-80 304.7 157 89.8
Cfa025028 Carpinus fangiana HOM05D004306 ORTHO05D005055 7.8e-67 258.8 266 49.2
EL10Ac5g12500 Beta vulgaris HOM05D004306 ORTHO05D005055 3.0e-66 256.9 140 86.4
SEGI_23023 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 6.6e-66 255.8 145 78.6
SEGI_27901 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 2.1e-64 250.8 146 79.5
EL10Ac1g01850 Beta vulgaris HOM05D004306 ORTHO05D005055 3.6e-64 250.0 149 75.2
MD00G1015600 Malus domestica HOM05D004306 ORTHO05D005055 8.9e-63 245.4 193 64.2
arahy.Tifrunner.gnm1.ann1.ZW9ABU Arachis hypogaea HOM05D004306 ORTHO05D005055 4.9e-61 239.6 148 71.6
SEGI_13173 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 1.2e-59 235.0 151 70.2
Sc16g0000130 Simmondsia chinensis HOM05D004306 ORTHO05D005055 1.3e-58 231.5 148 67.6
COL.COLO4_11551 Corchorus olitorius HOM05D004306 ORTHO05D005055 2.4e-52 210.7 135 74.8
RcHm_v2.0_Chr2g0107621 Rosa chinensis HOM05D004306 ORTHO05D005055 1.2e-46 191.8 138 65.9
TPR.G23871 Trifolium pratense HOM05D004306 ORTHO05D005055 1.3e-45 188.3 108 84.3
CDE07G1667 Ceratophyllum demersum HOM05D004306 ORTHO05D005055 1.1e-39 168.7 110 70.9
EL10Ac4g09102 Beta vulgaris HOM05D004306 ORTHO05D005055 8.7e-34 149.1 132 54.5
Lj4C160G10 Lonicera japonica HOM05D004306 ORTHO05D005055 8.7e-26 122.5 69 79.7
FAN28G1106 Fragaria x ananassa HOM05D004306 ORTHO05D005055 1.1e-25 122.1 75 73.3
Cfa004111 Carpinus fangiana HOM05D004306 ORTHO05D005055 1.9e-25 121.3 78 71.8
vmacro05396 Vaccinium macrocarpon HOM05D004306 ORTHO05D005055 2.5e-25 120.9 70 74.3
ATR0515G001 Amborella trichopoda HOM05D004306 ORTHO05D005055 5.3e-23 113.2 55 90.9
AUR62003988 Chenopodium quinoa HOM05D004306 ORTHO05D005055 2.0e-22 111.3 69 72.5
SGA_v2.0_scaffold21G09394 Striga asiatica HOM05D004306 ORTHO05D005055 3.4e-22 110.5 66 75.8
Dinv30076 Davidia involucrata HOM05D004306 ORTHO05D005055 3.8e-21 107.1 76 64.5
Psat5g012000 Pisum sativum HOM05D004306 ORTHO05D005055 2.4e-20 104.4 83 57.8
Nitab4.5_0000032g0200 Nicotiana tabacum HOM05D004306 ORTHO05D005055 1.1e-17 95.5 50 84.0
SEGI_03818 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 4.8e-16 90.1 67 58.2
Eucgr.H02294 Eucalyptus grandis HOM05D004306 ORTHO05D005055 1.0e-13 82.4 70 60.0
Cc07_g06910 Coffea canephora HOM05D004306 ORTHO05D005055 1.7e-13 81.6 62 62.9
EL10Ac4g09101 Beta vulgaris HOM05D004306 ORTHO05D005055 2.5e-09 67.8 43 65.1
Thecc.01G069900 Theobroma cacao HOM05D004306 ORTHO05D005055 9.6e-09 65.9 36 80.6
PRCOL_00001243 Prasinoderma coloniale HOM05D004306 ORTHO05D005055 1.3e-08 65.5 162 29.0
Sabra07G0047000 Salix brachista HOM05D004306 ORTHO05D005055 4.8e-08 63.5 86 45.3


User provided reference genes

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