Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G107.3 Capsicum annuum HOM05D004288 ORTHO05D004997 4.5e-45 184.1 86 100.0
Sopen12g030390 Solanum pennellii HOM05D004288 ORTHO05D004997 2.8e-31 138.3 86 80.2
Solyc12g088410.3 Solanum lycopersicum HOM05D004288 ORTHO05D004997 6.3e-31 137.1 86 80.2
PGSC0003DMG401011559 Solanum tuberosum HOM05D004288 ORTHO05D004997 7.7e-29 130.2 74 83.8
Peaxi162Scf00160g00120 Petunia axillaris HOM05D004288 ORTHO05D004997 1.7e-28 129.0 87 74.7
Nitab4.5_0000569g0070 Nicotiana tabacum HOM05D004288 ORTHO05D004997 1.1e-27 126.3 85 72.9
Nitab4.5_0014410g0020 Nicotiana tabacum HOM05D004288 ORTHO05D004997 6.7e-25 117.1 85 69.4
Nitab4.5_0000934g0110 Nicotiana tabacum HOM05D004288 ORTHO05D004997 2.6e-24 115.2 82 69.5
Nitab4.5_0011511g0010 Nicotiana tabacum HOM05D004288 ORTHO05D004997 1.8e-22 109.0 91 63.7
Peaxi162Scf00081g01322 Petunia axillaris HOM05D004288 ORTHO05D004997 2.2e-20 102.1 83 62.7
Hma1.2p1_0819F.1_g223820 Hydrangea macrophylla HOM05D004288 ORTHO05D004997 4.2e-19 97.8 70 67.1
Actinidia22683 Actinidia chinensis HOM05D004288 ORTHO05D004997 1.6e-18 95.9 71 67.6
Actinidia10187 Actinidia chinensis HOM05D004288 ORTHO05D004997 4.7e-18 94.4 78 61.5
PGSC0003DMG400021529 Solanum tuberosum HOM05D004288 ORTHO05D004997 8.0e-18 93.6 68 70.6
vmacro21447 Vaccinium macrocarpon HOM05D004288 ORTHO05D004997 8.0e-18 93.6 78 61.5
MSTRG.1030 Avicennia marina HOM05D004288 ORTHO05D004997 1.4e-17 92.8 65 64.6
Cfa013675 Carpinus fangiana HOM05D004288 ORTHO05D004997 2.3e-17 92.0 74 60.8
Rhsim06G0060800 Rhododendron simsii HOM05D004288 ORTHO05D004997 2.3e-17 92.0 78 60.3
Dinv44970 Davidia involucrata HOM05D004288 ORTHO05D004997 3.0e-17 91.7 74 58.1
Duzib041G0778 Durio zibethinus HOM05D004288 ORTHO05D004997 6.8e-17 90.5 67 65.7
TAR376G0993 Trochodendron aralioides HOM05D004288 ORTHO05D004997 8.8e-17 90.1 78 56.4
SalBow6G1935 Salvia bowleyana HOM05D004288 ORTHO05D004997 1.2e-16 89.7 76 57.9
SalBow8G0960 Salvia bowleyana HOM05D004288 ORTHO05D004997 1.2e-16 89.7 76 57.9
Solyc04g078010.4 Solanum lycopersicum HOM05D004288 ORTHO05D004997 1.2e-16 89.7 74 67.6
Oeu057368.1 Olea europaea HOM05D004288 ORTHO05D004997 1.5e-16 89.4 75 60.0
Gohir.D05G211900 Gossypium hirsutum HOM05D004288 ORTHO05D004997 2.0e-16 89.0 68 63.2
Gorai.009G218500 Gossypium raimondii HOM05D004288 ORTHO05D004997 2.0e-16 89.0 68 63.2
MD08G1087000 Malus domestica HOM05D004288 ORTHO05D004997 3.4e-16 88.2 70 61.4
Gohir.A05G208400 Gossypium hirsutum HOM05D004288 ORTHO05D004997 4.4e-16 87.8 68 61.8
Cc10_g05620 Coffea canephora HOM05D004288 ORTHO05D004997 5.7e-16 87.4 78 55.1
CSS0041913 Camellia sinensis var. sinensis HOM05D004288 ORTHO05D004997 7.5e-16 87.0 77 54.5
Duzib116G0008 Durio zibethinus HOM05D004288 ORTHO05D004997 9.8e-16 86.7 60 66.7
TAR628G0045 Trochodendron aralioides HOM05D004288 ORTHO05D004997 9.8e-16 86.7 77 54.5
Actinidia38098 Actinidia chinensis HOM05D004288 ORTHO05D004997 1.7e-15 85.9 71 57.7
SalBow7G4748 Salvia bowleyana HOM05D004288 ORTHO05D004997 1.7e-15 85.9 70 57.1
Atru.chr13.813 Acer truncatum HOM05D004288 ORTHO05D004997 2.2e-15 85.5 73 58.9
CSS0005181 Camellia sinensis var. sinensis HOM05D004288 ORTHO05D004997 2.8e-15 85.1 78 55.1
Haze_22316 Corylus avellana HOM05D004288 ORTHO05D004997 2.8e-15 85.1 69 62.3
Sopen04g031610 Solanum pennellii HOM05D004288 ORTHO05D004997 2.8e-15 85.1 74 64.9
CiPaw.07G176600 Carya illinoinensis HOM05D004288 ORTHO05D004997 3.7e-15 84.7 76 53.9
Migut.C00495 Erythranthe guttata HOM05D004288 ORTHO05D004997 3.7e-15 84.7 58 72.4
Potri.014G017600 Populus trichocarpa HOM05D004288 ORTHO05D004997 4.8e-15 84.3 65 66.2
Prupe.1G424700 Prunus persica HOM05D004288 ORTHO05D004997 6.3e-15 84.0 71 59.2
CANSAT25G2350 Cannabis sativa HOM05D004288 ORTHO05D004997 1.1e-14 83.2 66 57.6
Thecc.08G091000 Theobroma cacao HOM05D004288 ORTHO05D004997 1.1e-14 83.2 67 62.7
Ciclev10002881m.g Citrus clementina HOM05D004288 ORTHO05D004997 1.4e-14 82.8 75 56.0
Eucgr.F00116 Eucalyptus grandis HOM05D004288 ORTHO05D004997 1.4e-14 82.8 69 59.4
Hma1.2p1_0210F.1_g089620 Hydrangea macrophylla HOM05D004288 ORTHO05D004997 1.4e-14 82.8 78 53.8
PSO541G1266 Papaver somniferum HOM05D004288 ORTHO05D004997 3.1e-14 81.6 76 53.9
Ah.05g167180 Amaranthus hybridus HOM05D004288 ORTHO05D004997 4.1e-14 81.3 72 62.5
MD15G1071700 Malus domestica HOM05D004288 ORTHO05D004997 5.4e-14 80.9 74 54.1
GSVIVG01009362001 Vitis vinifera HOM05D004288 ORTHO05D004997 5.4e-14 80.9 67 59.7
Aqoxy6G02704 Aquilegia oxysepala HOM05D004288 ORTHO05D004997 9.1e-14 80.1 67 59.7
COL.COLO4_28524 Corchorus olitorius HOM05D004288 ORTHO05D004997 1.2e-13 79.7 62 62.9
Gohir.A06G023200 Gossypium hirsutum HOM05D004288 ORTHO05D004997 2.0e-13 79.0 73 57.5
Sabra14G0011500 Salix brachista HOM05D004288 ORTHO05D004997 2.0e-13 79.0 73 58.9
CiPaw.08G049000 Carya illinoinensis HOM05D004288 ORTHO05D004997 2.7e-13 78.6 77 50.6
Gorai.010G024900 Gossypium raimondii HOM05D004288 ORTHO05D004997 2.7e-13 78.6 73 57.5
TWI56G0562 Tripterygium wilfordii HOM05D004288 ORTHO05D004997 2.7e-13 78.6 70 55.7
Dinv39247 Davidia involucrata HOM05D004288 ORTHO05D004997 3.5e-13 78.2 74 54.1
Gohir.D06G020400 Gossypium hirsutum HOM05D004288 ORTHO05D004997 3.5e-13 78.2 73 57.5
PSO675G1665 Papaver somniferum HOM05D004288 ORTHO05D004997 3.5e-13 78.2 65 58.5
Rhsim07G0221200 Rhododendron simsii HOM05D004288 ORTHO05D004997 3.5e-13 78.2 55 67.3
Cpa.g.sc21.102 Carica papaya HOM05D004288 ORTHO05D004997 7.7e-13 77.0 75 53.3
EL10As7g23804 Beta vulgaris HOM05D004288 ORTHO05D004997 1.0e-12 76.6 73 56.2
Manes.18G045000 Manihot esculenta HOM05D004288 ORTHO05D004997 1.0e-12 76.6 69 55.1
TWI12G0116 Tripterygium wilfordii HOM05D004288 ORTHO05D004997 1.0e-12 76.6 43 79.1
DCAR_012811 Daucus carota HOM05D004288 ORTHO05D004997 1.7e-12 75.9 65 60.0
CiPaw.08G113500 Carya illinoinensis HOM05D004288 ORTHO05D004997 2.3e-12 75.5 77 49.4
Sc02g0007800 Simmondsia chinensis HOM05D003189 ORTHO05D003449 2.3e-12 75.5 65 58.5
SGA_v2.0_scaffold14G06935 Striga asiatica HOM05D004288 ORTHO05D004997 2.3e-12 75.5 77 54.5
MSTRG.22227 Avicennia marina HOM05D004288 ORTHO05D004997 2.9e-12 75.1 64 59.4
HanXRQChr01g0027971 Helianthus annuus HOM05D004288 ORTHO05D004997 3.8e-12 74.7 69 58.0
HanXRQChr11g0341661 Helianthus annuus HOM05D004288 ORTHO05D004997 5.0e-12 74.3 58 65.5
MBI16_g22811_MAGBIO Magnolia biondii HOM05D004288 ORTHO05D004997 6.6e-12 73.9 82 51.2
GSVIVG01037855001 Vitis vinifera HOM05D004288 ORTHO05D004997 6.6e-12 73.9 68 52.9
CiPaw.04G152800 Carya illinoinensis HOM05D004288 ORTHO05D004997 8.6e-12 73.6 74 54.1
Glyma.17G236500 Glycine max HOM05D004288 ORTHO05D004997 8.6e-12 73.6 76 56.6
TAR636G2516 Trochodendron aralioides HOM05D004288 ORTHO05D004997 1.1e-11 73.2 77 50.6
CiPaw.13G085100 Carya illinoinensis HOM05D004288 ORTHO05D004997 1.5e-11 72.8 78 51.3
Os03g0206201 Oryza sativa ssp. japonica HOM05D004288 ORTHO05D004997 1.9e-11 72.4 42 69.0
Hund14391 Selenicereus undatus HOM05D004288 ORTHO05D004997 1.9e-11 72.4 64 62.5
QL12p037641 Quercus lobata HOM05D004288 ORTHO05D004997 2.5e-11 72.0 61 55.7
HanXRQChr09g0266571 Helianthus annuus HOM05D004288 ORTHO05D004997 3.3e-11 71.6 53 62.3
Phvul.001G026500 Phaseolus vulgaris HOM05D004288 ORTHO05D004997 3.3e-11 71.6 79 51.9
Aqoxy5G00895 Aquilegia oxysepala HOM05D003189 ORTHO05D003449 4.2e-11 71.2 54 61.1
ClCG05G020460 Citrullus lanatus HOM05D004288 ORTHO05D004997 5.5e-11 70.9 78 46.2
DCAR_008852 Daucus carota HOM05D004288 ORTHO05D004997 9.5e-11 70.1 75 52.0
Glyma.14G087800 Glycine max HOM05D004288 ORTHO05D004997 9.5e-11 70.1 76 53.9
ECA232G2356 Erigeron canadensis HOM05D004288 ORTHO05D004997 1.2e-10 69.7 64 57.8
AT5G01075 Arabidopsis thaliana HOM05D004288 ORTHO05D004997 1.6e-10 69.3 52 65.4
Lsat_1_v5_gn_6_112441 Lactuca sativa HOM05D004288 ORTHO05D004997 1.6e-10 69.3 54 64.8
RcHm_v2.0_Chr6g0309361 Rosa chinensis HOM05D004288 ORTHO05D004997 1.6e-10 69.3 81 50.6
unitig_8.g4880 Utricularia gibba HOM05D004288 ORTHO05D004997 1.6e-10 69.3 59 57.6
CANSAT54G1812 Cannabis sativa HOM05D004288 ORTHO05D004997 2.1e-10 68.9 43 72.1
FvH4_2g33280 Fragaria vesca HOM05D004288 ORTHO05D004997 2.8e-10 68.6 48 66.7
FAN24G2538 Fragaria x ananassa HOM05D004288 ORTHO05D004997 2.8e-10 68.6 48 66.7
FAN27G1232 Fragaria x ananassa HOM05D004288 ORTHO05D004997 2.8e-10 68.6 48 66.7
Thhalv10015166m.g Eutrema salsugineum HOM05D004288 ORTHO05D004997 4.7e-10 67.8 52 63.5
CDE06G1799 Ceratophyllum demersum HOM05D004288 ORTHO05D004997 6.1e-10 67.4 53 64.2
THA.LOC104825767 Tarenaya hassleriana HOM05D004288 ORTHO05D004997 6.1e-10 67.4 61 50.8
Lsat_1_v5_gn_4_130821 Lactuca sativa HOM05D004288 ORTHO05D004997 8.0e-10 67.0 48 68.8
Migut.N02769 Erythranthe guttata HOM05D004288 ORTHO05D004997 1.0e-09 66.6 47 61.7
Psat6g016040 Pisum sativum HOM05D004288 ORTHO05D004997 1.0e-09 66.6 69 55.1
TPR.G11815 Trifolium pratense HOM05D004288 ORTHO05D004997 1.4e-09 66.2 82 45.1
MELO3C016806.2 Cucumis melo HOM05D004288 ORTHO05D004997 2.3e-09 65.5 74 43.2
Zm00001eb007460 Zea mays HOM05D004288 ORTHO05D004997 2.3e-09 65.5 45 60.0
CDE04G1463 Ceratophyllum demersum HOM05D004288 ORTHO05D004997 3.0e-09 65.1 72 51.4
ClCG05G020480 Citrullus lanatus HOM05D004288 ORTHO05D004997 3.0e-09 65.1 41 65.9
CsaV3_4G034910 Cucumis sativus L. HOM05D004288 ORTHO05D003449 3.0e-09 65.1 41 65.9
FAN15G0972 Fragaria x ananassa HOM05D004288 ORTHO05D004997 3.0e-09 65.1 48 64.6
TAR381G1169 Trochodendron aralioides HOM05D004288 ORTHO05D004997 3.0e-09 65.1 69 49.3
Oeu059079.1 Olea europaea HOM05D004288 ORTHO05D004997 4.0e-09 64.7 85 47.1
Sed0012219 Sechium edule HOM05D004288 ORTHO05D004997 4.0e-09 64.7 48 62.5
FAN20G2816 Fragaria x ananassa HOM05D004288 ORTHO05D004997 5.2e-09 64.3 48 62.5
Sed0026714 Sechium edule HOM05D004288 ORTHO05D004997 5.2e-09 64.3 75 45.3
ECA246G3669 Erigeron canadensis HOM05D002841 ORTHO05D003158 6.8e-09 63.9 55 56.4
Carub.0006s0080 Capsella rubella HOM05D004288 ORTHO05D004997 8.9e-09 63.5 50 62.0
THA.LOC104801605 Tarenaya hassleriana HOM05D004288 ORTHO05D004997 8.9e-09 63.5 46 58.7
PGR083G0410 Punica granatum HOM05D004288 ORTHO05D004997 1.2e-08 63.2 49 63.3
MELO3C032376.2 Cucumis melo HOM05D004288 ORTHO05D004997 1.5e-08 62.8 41 63.4
SGA_v2.0_scaffold238G43969 Striga asiatica HOM05D004288 ORTHO05D004997 1.5e-08 62.8 37 70.3
Medtr1g018470 Medicago truncatula HOM05D004288 ORTHO05D004997 2.0e-08 62.4 78 46.2
Medtr1g418505 Medicago truncatula HOM05D004288 ORTHO05D004997 2.0e-08 62.4 78 46.2
Nn1g04602 Nelumbo nucifera HOM05D004288 ORTHO05D004997 2.6e-08 62.0 70 45.7
Sed0005367 Sechium edule HOM05D004288 ORTHO05D004997 3.4e-08 61.6 41 63.4
PGR031G3267 Punica granatum HOM05D004288 ORTHO05D004997 4.4e-08 61.2 59 50.8
TPR.G3776 Trifolium pratense HOM05D004288 ORTHO05D004997 4.4e-08 61.2 64 51.6
VMungo0647G1919 Vigna mungo HOM05D004288 ORTHO05D004997 5.7e-08 60.8 65 52.3
VMungo0647G1736 Vigna mungo HOM05D004288 ORTHO05D004997 9.8e-08 60.1 60 53.3
Sp6g40470 Schrenkiella parvula HOM05D004288 ORTHO05D004997 1.3e-07 59.7 40 65.0
Ciclev10029597m.g Citrus clementina HOM05D004288 ORTHO05D004997 1.7e-07 59.3 38 71.1
DCAR_020077 Daucus carota HOM05D004288 ORTHO05D004997 1.7e-07 59.3 61 55.7
HPP92_013399 Vanilla planifolia HOM05D059585 ORTHO05D004997 1.7e-07 59.3 55 47.3
VMungo0647G1883 Vigna mungo HOM05D004288 ORTHO05D004997 1.7e-07 59.3 65 52.3
AL6G11150 Arabidopsis lyrata HOM05D004288 ORTHO05D004997 2.2e-07 58.9 36 69.4
Phvul.001G026400 Phaseolus vulgaris HOM05D004288 ORTHO05D004997 2.2e-07 58.9 60 48.3
Psat6g015560 Pisum sativum HOM05D004288 ORTHO05D004997 2.2e-07 58.9 62 53.2
BcaC03g13064 Brassica carinata HOM05D004288 ORTHO05D004997 2.8e-07 58.5 49 61.2
C02p00310 Brassica napus HOM05D004288 ORTHO05D004997 2.8e-07 58.5 49 61.2
AUR62041737 Chenopodium quinoa HOM05D004288 ORTHO05D004997 2.8e-07 58.5 68 51.5
BcaNung02758 Brassica carinata HOM05D004288 ORTHO05D004997 3.7e-07 58.2 39 69.2
C09p74500 Brassica napus HOM05D004288 ORTHO05D004997 3.7e-07 58.2 39 69.2
BraA02t04704Z Brassica rapa HOM05D004288 ORTHO05D004997 3.7e-07 58.2 49 59.2
Lalb_Chr11g0062841 Lupinus albus HOM05D004288 ORTHO05D004997 3.7e-07 58.2 76 39.5
BcaB05g21897 Brassica carinata HOM05D004288 ORTHO05D004997 4.9e-07 57.8 50 58.0
BolC9t60183H Brassica oleracea HOM05D004288 ORTHO05D004997 4.9e-07 57.8 48 58.3
AUR62024063 Chenopodium quinoa HOM05D004288 ORTHO05D004997 8.3e-07 57.0 59 52.5
BcaNung06280 Brassica carinata HOM05D004288 ORTHO05D004997 1.1e-06 56.6 40 67.5
CDE04G1843 Ceratophyllum demersum HOM05D004288 ORTHO05D004997 1.1e-06 56.6 44 50.0
AUR62024064 Chenopodium quinoa HOM05D004288 ORTHO05D004997 1.1e-06 56.6 44 65.9
BolC2t06031H Brassica oleracea HOM05D004288 ORTHO05D004997 1.4e-06 56.2 49 59.2
AUR62029595 Chenopodium quinoa HOM05D004288 ORTHO05D004997 1.4e-06 56.2 68 50.0
Lj1g0008863 Lotus japonicus HOM05D004288 ORTHO05D004997 2.4e-06 55.5 75 44.0
Lj6g0004688 Lotus japonicus HOM05D004288 ORTHO05D004997 2.4e-06 55.5 59 49.2
Lalb_Chr23g0267451 Lupinus albus HOM05D004288 ORTHO05D004997 2.4e-06 55.5 62 46.8
BcaNung04465 Brassica carinata HOM05D004288 ORTHO05D004997 4.1e-06 54.7 39 66.7
A10p33580 Brassica napus HOM05D004288 ORTHO05D004997 4.1e-06 54.7 39 66.7
BraA10t45389Z Brassica rapa HOM05D004288 ORTHO05D004997 4.1e-06 54.7 39 66.7
Lj3g0011225 Lotus japonicus HOM05D004288 ORTHO05D004997 9.2e-06 53.5 62 46.8
Nn5g30537 Nelumbo nucifera HOM05D004288 ORTHO05D004997 9.2e-06 53.5 104 33.7


User provided reference genes

Program Settings