Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G107.17 Capsicum annuum HOM05D006683 ORTHO05D008629 9.7e-199 696.8 403 100.0
PGSC0003DMG400006076 Solanum tuberosum HOM05D006683 ORTHO05D008629 4.1e-64 249.6 308 50.3
Sopen09g031780 Solanum pennellii HOM05D006683 ORTHO05D008629 2.2e-57 227.3 308 46.1
Nitab4.5_0000941g0150 Nicotiana tabacum HOM05D006683 ORTHO05D008629 7.0e-56 222.2 301 48.8
CAN.G947.31 Capsicum annuum HOM05D006683 ORTHO05D008629 6.8e-51 205.7 310 51.3
CAN.G500.55 Capsicum annuum HOM05D006683 ORTHO05D008629 8.8e-51 205.3 302 44.4
PGSC0003DMG400012788 Solanum tuberosum HOM05D006683 ORTHO05D008629 4.8e-49 199.5 230 53.9
CAN.G500.45 Capsicum annuum HOM05D000344 ORTHO05D008629 1.6e-47 194.5 316 44.0
PGSC0003DMG400025727 Solanum tuberosum HOM05D006683 ORTHO05D008629 9.5e-45 185.3 230 50.9
Nitab4.5_0002398g0060 Nicotiana tabacum HOM05D006683 ORTHO05D008629 2.8e-44 183.7 301 45.5
CAN.G1690.10 Capsicum annuum HOM05D006683 ORTHO05D008629 4.7e-44 183.0 212 55.2
CAN.G500.84 Capsicum annuum HOM05D006683 ORTHO05D008629 6.8e-43 179.1 226 48.7
CAN.G500.88 Capsicum annuum HOM05D006683 ORTHO05D008629 6.8e-43 179.1 226 48.7
PGSC0003DMG400037968 Solanum tuberosum HOM05D006683 ORTHO05D008629 1.5e-42 177.9 188 55.9
PGSC0003DMG400035387 Solanum tuberosum HOM05D006683 ORTHO05D008629 7.5e-42 175.6 195 52.3
Nitab4.5_0011843g0020 Nicotiana tabacum HOM05D006683 ORTHO05D008629 1.3e-41 174.9 219 48.9
PGSC0003DMG400023203 Solanum tuberosum HOM05D006683 ORTHO05D008629 1.3e-41 174.9 230 48.3
Sopen01g028730 Solanum pennellii HOM05D006683 ORTHO05D008629 2.2e-41 174.1 218 50.9
PGSC0003DMG400003795 Solanum tuberosum HOM05D006683 ORTHO05D008629 2.8e-41 173.7 188 52.1
PGSC0003DMG400022665 Solanum tuberosum HOM05D006683 ORTHO05D008629 6.3e-41 172.6 221 48.4
PGSC0003DMG400041893 Solanum tuberosum HOM05D006683 ORTHO05D008629 6.3e-41 172.6 259 44.4
PGSC0003DMG400008700 Solanum tuberosum HOM05D006683 ORTHO05D008629 1.4e-40 171.4 230 48.3
PGSC0003DMG400006095 Solanum tuberosum HOM05D006683 ORTHO05D008629 4.1e-40 169.9 253 44.7
Peaxi162Scf00145g01527 Petunia axillaris HOM05D006683 ORTHO05D008629 1.6e-39 167.9 234 50.0
PGSC0003DMG400042529 Solanum tuberosum HOM05D006683 ORTHO05D008629 1.6e-39 167.9 253 45.5
Nitab4.5_0000306g0260 Nicotiana tabacum HOM05D006683 ORTHO05D008629 2.0e-39 167.5 260 45.8
Nitab4.5_0004698g0030 Nicotiana tabacum HOM05D006683 ORTHO05D008629 2.7e-39 167.2 214 50.5
CAN.G500.48 Capsicum annuum HOM05D006683 ORTHO05D008629 2.3e-38 164.1 303 40.3
PGSC0003DMG400040306 Solanum tuberosum HOM05D006683 ORTHO05D008629 9.5e-37 158.7 189 51.3
Nitab4.5_0003868g0040 Nicotiana tabacum HOM05D006683 ORTHO05D008629 2.1e-36 157.5 189 50.8
Nitab4.5_0000941g0140 Nicotiana tabacum HOM05D006683 ORTHO05D008629 1.0e-35 155.2 148 58.1
Nitab4.5_0000306g0210 Nicotiana tabacum HOM05D006683 ORTHO05D008629 1.8e-35 154.5 231 46.3
PGSC0003DMG400044512 Solanum tuberosum HOM05D006683 ORTHO05D008629 2.3e-35 154.1 151 58.9
Nitab4.5_0000334g0170 Nicotiana tabacum HOM05D006683 ORTHO05D008629 8.9e-35 152.1 193 47.2
Peaxi162Scf00493g00441 Petunia axillaris HOM05D006683 ORTHO05D008629 1.2e-34 151.8 216 47.2
PGSC0003DMG400036801 Solanum tuberosum HOM05D006683 ORTHO05D008629 2.0e-34 151.0 182 50.5
PGSC0003DMG400003794 Solanum tuberosum HOM05D006683 ORTHO05D008629 5.8e-34 149.4 200 47.0
Peaxi162Scf00637g00116 Petunia axillaris HOM05D006683 ORTHO05D008629 1.1e-32 145.2 245 42.4
PGSC0003DMG400026640 Solanum tuberosum HOM05D006683 ORTHO05D008629 1.4e-32 144.8 224 46.9
Nitab4.5_0000306g0290 Nicotiana tabacum HOM05D006683 ORTHO05D008629 9.2e-32 142.1 162 51.2
Peaxi162Scf00145g01526 Petunia axillaris HOM05D006683 ORTHO05D008629 3.5e-31 140.2 175 50.9
PGSC0003DMG400003835 Solanum tuberosum HOM05D006683 ORTHO05D008629 1.0e-30 138.7 171 49.7
Nitab4.5_0003868g0030 Nicotiana tabacum HOM05D006683 ORTHO05D008629 1.3e-30 138.3 212 46.7
Nitab4.5_0011737g0030 Nicotiana tabacum HOM05D006683 ORTHO05D008629 1.5e-29 134.8 183 54.6
PGSC0003DMG400018866 Solanum tuberosum HOM05D006683 ORTHO05D008629 7.3e-29 132.5 178 47.8
PGSC0003DMG400003430 Solanum tuberosum HOM05D006683 ORTHO05D008629 2.3e-27 127.5 169 49.1
Nitab4.5_0003070g0050 Nicotiana tabacum HOM05D006683 ORTHO05D008629 3.1e-27 127.1 115 60.9
CAN.G1200.2 Capsicum annuum HOM05D006683 ORTHO05D008629 6.8e-27 125.9 172 46.5
Nitab4.5_0004698g0060 Nicotiana tabacum HOM05D006683 ORTHO05D008629 7.5e-26 122.5 150 51.3
PGSC0003DMG400018861 Solanum tuberosum HOM05D006683 ORTHO05D008629 1.7e-25 121.3 170 47.1
CAN.G749.7 Capsicum annuum HOM05D006683 ORTHO05D008629 2.2e-25 120.9 197 46.2
PGSC0003DMG400003800 Solanum tuberosum HOM05D006683 ORTHO05D008629 4.9e-25 119.8 160 50.6
Nitab4.5_0002205g0070 Nicotiana tabacum HOM05D006683 ORTHO05D008629 6.4e-25 119.4 224 41.1
PGSC0003DMG400018867 Solanum tuberosum HOM05D006683 ORTHO05D008629 6.4e-25 119.4 168 46.4
CAN.G947.30 Capsicum annuum HOM05D006683 ORTHO05D008629 1.1e-24 118.6 313 46.6
PGSC0003DMG400018858 Solanum tuberosum HOM05D006683 ORTHO05D008629 3.2e-24 117.1 197 42.1
PGSC0003DMG400003834 Solanum tuberosum HOM05D006683 ORTHO05D008629 2.1e-23 114.4 207 41.1
CAN.G888.16 Capsicum annuum HOM05D006683 ORTHO05D008629 6.0e-23 112.8 193 43.5
Nitab4.5_0000022g0360 Nicotiana tabacum HOM05D006683 ORTHO05D008629 1.5e-21 108.2 108 59.3
CAN.G500.59 Capsicum annuum HOM05D006683 ORTHO05D008629 2.5e-21 107.5 161 44.7
Peaxi162Scf00244g01121 Petunia axillaris HOM05D006683 ORTHO05D008629 3.3e-21 107.1 142 48.6
PGSC0003DMG400003802 Solanum tuberosum HOM05D006683 ORTHO05D008629 4.3e-21 106.7 247 38.5
CAN.G500.46 Capsicum annuum HOM05D006683 ORTHO05D008629 3.6e-20 103.6 150 49.3
Peaxi162Scf00493g00440 Petunia axillaris HOM05D006683 ORTHO05D008629 4.7e-20 103.2 139 50.4
Peaxi162Scf00047g00852 Petunia axillaris HOM05D006683 ORTHO05D008629 2.3e-19 100.9 136 48.5
PGSC0003DMG400036410 Solanum tuberosum HOM05D006683 ORTHO05D008629 3.1e-19 100.5 177 44.6
QL05p032382 Quercus lobata HOM05D001477 ORTHO05D001182 1.5e-18 98.2 235 29.8
QL05p033764 Quercus lobata HOM05D001477 ORTHO05D001182 1.5e-18 98.2 235 29.8
PGSC0003DMG400038441 Solanum tuberosum HOM05D006683 ORTHO05D008629 3.4e-18 97.1 113 52.2
CAN.G107.36 Capsicum annuum HOM05D006683 ORTHO05D008629 5.8e-18 96.3 214 37.9
Peaxi162Scf00047g00846 Petunia axillaris HOM05D006683 ORTHO05D008629 9.9e-18 95.5 136 44.9
CAN.G1567.3 Capsicum annuum HOM05D006683 ORTHO05D008629 3.2e-16 90.5 126 46.8
CAN.G1690.11 Capsicum annuum HOM05D006683 ORTHO05D008629 5.4e-16 89.7 313 29.1
CAN.G500.56 Capsicum annuum HOM05D006683 ORTHO05D008629 9.2e-16 89.0 129 46.5
COL.COLO4_30418 Corchorus olitorius HOM05D001477 ORTHO05D001182 2.7e-15 87.4 232 28.9
Nitab4.5_0007957g0020 Nicotiana tabacum HOM05D006683 ORTHO05D008629 2.7e-15 87.4 109 48.6
PGSC0003DMG400023911 Solanum tuberosum HOM05D006683 ORTHO05D008629 2.7e-15 87.4 238 34.9
Nitab4.5_0008346g0010 Nicotiana tabacum HOM05D006683 ORTHO05D008629 6.0e-15 86.3 85 57.6
CAN.G107.10 Capsicum annuum HOM05D006683 ORTHO05D008629 7.8e-15 85.9 75 57.3
Peaxi162Scf00493g00437 Petunia axillaris HOM05D006683 ORTHO05D008629 1.3e-14 85.1 109 49.5
QL05p016571 Quercus lobata HOM05D001477 ORTHO05D001182 3.0e-14 84.0 235 28.5
Haze_00867 Corylus avellana HOM05D001477 ORTHO05D001182 5.1e-14 83.2 204 29.4
Haze_18899 Corylus avellana HOM05D001477 ORTHO05D001182 5.1e-14 83.2 206 28.2
CAN.G107.9 Capsicum annuum HOM05D006683 ORTHO05D008629 6.6e-14 82.8 131 43.5
PGR031G0401 Punica granatum HOM05D001477 ORTHO05D001182 6.6e-14 82.8 232 30.2
CAN.G947.29 Capsicum annuum HOM05D006683 ORTHO05D008629 1.1e-13 82.0 120 46.7
Peaxi162Scf00145g01525 Petunia axillaris HOM05D006683 ORTHO05D008629 1.1e-13 82.0 149 41.6
Cfa020687 Carpinus fangiana HOM05D001477 ORTHO05D001182 1.5e-13 81.6 204 29.9
Peaxi162Scf00244g00105 Petunia axillaris HOM05D006683 ORTHO05D008629 1.5e-13 81.6 112 47.3
Potri.001G395000 Populus trichocarpa HOM05D001477 ORTHO05D001182 1.5e-13 81.6 235 27.2
QL05p053661 Quercus lobata HOM05D001477 ORTHO05D001182 1.5e-13 81.6 230 27.0
PGSC0003DMG400003828 Solanum tuberosum HOM05D006683 ORTHO05D008629 3.3e-13 80.5 113 50.4
Haze_03787 Corylus avellana HOM05D001477 ORTHO05D001182 7.3e-13 79.3 242 28.9
CAN.G500.89 Capsicum annuum HOM05D006683 ORTHO05D008629 2.8e-12 77.4 114 43.0
TWI39G0090 Tripterygium wilfordii HOM05D001477 ORTHO05D001182 2.8e-12 77.4 219 28.3
AUR62023316 Chenopodium quinoa HOM05D001477 ORTHO05D001182 8.1e-12 75.9 221 25.3
QL01p017794 Quercus lobata HOM05D001477 ORTHO05D001182 8.1e-12 75.9 205 28.8
Cfa015667 Carpinus fangiana HOM05D001477 ORTHO05D001182 1.1e-11 75.5 209 29.2
Prupe.3G053600 Prunus persica HOM05D001477 ORTHO05D001182 1.1e-11 75.5 231 24.7
Actinidia26014 Actinidia chinensis HOM05D001477 ORTHO05D001182 1.4e-11 75.1 204 27.5
EL10Ac3g05729 Beta vulgaris HOM05D001477 ORTHO05D001182 1.4e-11 75.1 228 29.4
Nitab4.5_0004698g0080 Nicotiana tabacum HOM05D006683 ORTHO05D008629 1.4e-11 75.1 145 41.4
QL04p060682 Quercus lobata HOM05D001477 ORTHO05D001182 1.4e-11 75.1 223 26.5
QL04p060686 Quercus lobata HOM05D001477 ORTHO05D001182 1.8e-11 74.7 227 25.6
Dinv37940 Davidia involucrata HOM05D001477 ORTHO05D001182 2.4e-11 74.3 205 27.8
Hma1.2p1_0978F.1_g243340 Hydrangea macrophylla HOM05D001477 ORTHO05D001182 2.4e-11 74.3 236 28.0
Manes.11G029400 Manihot esculenta HOM05D001477 ORTHO05D001182 3.1e-11 73.9 200 27.5
Medtr6g006730 Medicago truncatula HOM05D001477 ORTHO05D001182 4.0e-11 73.6 245 28.6
QL05p016344 Quercus lobata HOM05D001477 ORTHO05D001182 4.0e-11 73.6 208 25.5
arahy.Tifrunner.gnm1.ann1.2ELG64 Arachis hypogaea HOM05D001477 ORTHO05D001182 5.2e-11 73.2 251 27.9
CAN.G1349.10 Capsicum annuum HOM05D001477 ORTHO05D001182 5.2e-11 73.2 229 26.2
PGSC0003DMG400038781 Solanum tuberosum HOM05D006683 ORTHO05D008629 8.9e-11 72.4 81 53.1
QL02p094064 Quercus lobata HOM05D001477 ORTHO05D001182 1.2e-10 72.0 216 27.3
Solyc03g121290.4 Solanum lycopersicum HOM05D001477 ORTHO05D001182 1.5e-10 71.6 222 26.1
Lsat_1_v5_gn_4_96261 Lactuca sativa HOM05D000862 ORTHO05D000943 2.0e-10 71.2 220 21.8
Peaxi162Scf00566g00610 Petunia axillaris HOM05D006683 ORTHO05D008629 2.0e-10 71.2 214 30.8
Sopen03g040100 Solanum pennellii HOM05D001477 ORTHO05D001182 2.6e-10 70.9 222 26.1
CAN.G1668.1 Capsicum annuum HOM05D001477 ORTHO05D001182 3.4e-10 70.5 226 26.1
Gorai.009G138900 Gossypium raimondii HOM05D001477 ORTHO05D001182 3.4e-10 70.5 186 30.1
PGSC0003DMG400002600 Solanum tuberosum HOM05D001477 ORTHO05D001182 3.4e-10 70.5 226 25.2
HanXRQChr09g0276031 Helianthus annuus HOM05D001477 ORTHO05D001182 5.8e-10 69.7 193 27.5
EL10Ac3g05730 Beta vulgaris HOM05D001477 ORTHO05D001182 9.9e-10 68.9 243 26.7
Ciclev10025841m.g Citrus clementina HOM05D001477 ORTHO05D001182 9.9e-10 68.9 193 29.0
CAN.G1373.24 Capsicum annuum HOM05D001477 ORTHO05D001182 1.3e-09 68.6 226 26.1
Rhsim08G0230500 Rhododendron simsii HOM05D001477 ORTHO05D001182 1.3e-09 68.6 197 28.9
CSS0038081 Camellia sinensis var. sinensis HOM05D001477 ORTHO05D001182 1.7e-09 68.2 222 24.8
Nitab4.5_0002205g0060 Nicotiana tabacum HOM05D006683 ORTHO05D008629 1.7e-09 68.2 92 43.5
Haze_18985 Corylus avellana HOM05D001477 ORTHO05D001182 2.2e-09 67.8 230 26.5
CAN.G635.4 Capsicum annuum HOM05D001477 ORTHO05D001182 2.9e-09 67.4 227 27.3
AUR62015215 Chenopodium quinoa HOM05D001477 ORTHO05D001182 3.8e-09 67.0 212 29.2
Migut.E00605 Erythranthe guttata HOM05D005930 ORTHO05D003423 3.8e-09 67.0 227 26.9
QL04p079456 Quercus lobata HOM05D001477 ORTHO05D001182 3.8e-09 67.0 187 28.3
CSS0009889 Camellia sinensis var. sinensis HOM05D001477 ORTHO05D001182 4.9e-09 66.6 190 25.8
CAN.G635.12 Capsicum annuum HOM05D001477 ORTHO05D001182 4.9e-09 66.6 227 27.3
Ciclev10025281m.g Citrus clementina HOM05D001477 ORTHO05D001182 4.9e-09 66.6 245 26.1
COL.COLO4_07576 Corchorus olitorius HOM05D001477 ORTHO05D001182 4.9e-09 66.6 232 30.2
Manes.07G068500 Manihot esculenta HOM05D001477 ORTHO05D001182 4.9e-09 66.6 210 28.1
TAR627G0813 Trochodendron aralioides HOM05D000421 ORTHO05D001182 4.9e-09 66.6 239 26.4
Rhsim08G0241400 Rhododendron simsii HOM05D001477 ORTHO05D001182 6.4e-09 66.2 210 28.1
Haze_18944 Corylus avellana HOM05D001477 ORTHO05D001182 8.4e-09 65.9 241 23.7
Lj3g0014094 Lotus japonicus HOM05D001477 ORTHO05D001182 8.4e-09 65.9 251 27.9
QL05p018582 Quercus lobata HOM05D001477 ORTHO05D001182 8.4e-09 65.9 208 24.0
QL93p1866_0198 Quercus lobata HOM05D001477 ORTHO05D001182 8.4e-09 65.9 208 24.0
Dinv40414 Davidia involucrata HOM05D001477 ORTHO05D001182 1.4e-08 65.1 227 24.7
Sed0016693 Sechium edule HOM05D001477 ORTHO05D001182 1.4e-08 65.1 209 23.4
CANSAT64G2494 Cannabis sativa HOM05D000051 ORTHO05D001182 1.9e-08 64.7 210 27.6
Ciclev10025282m.g Citrus clementina HOM05D001477 ORTHO05D001182 1.9e-08 64.7 247 25.5
QL11p055690 Quercus lobata HOM05D001477 ORTHO05D001182 1.9e-08 64.7 242 26.9
QL01p017812 Quercus lobata HOM05D001477 ORTHO05D001182 2.4e-08 64.3 139 28.8
Ciclev10000694m.g Citrus clementina HOM05D001477 ORTHO05D001182 5.4e-08 63.2 178 29.2
Ciclev10027156m.g Citrus clementina HOM05D001477 ORTHO05D001182 5.4e-08 63.2 224 27.2
Hma1.2p1_0388F.1_g142070 Hydrangea macrophylla HOM05D001477 ORTHO05D001182 5.4e-08 63.2 207 27.1
Lj3g0022321 Lotus japonicus HOM05D001477 ORTHO05D001182 5.4e-08 63.2 251 27.9
PGR142G1584 Punica granatum HOM05D001477 ORTHO05D001182 5.4e-08 63.2 192 27.6
SGA_v2.0_scaffold51G18812 Striga asiatica HOM05D005930 ORTHO05D003423 5.4e-08 63.2 203 27.1
Cfa020769 Carpinus fangiana HOM05D001477 ORTHO05D001182 1.2e-07 62.0 216 26.9
Ciclev10025305m.g Citrus clementina HOM05D001477 ORTHO05D001182 1.2e-07 62.0 216 27.3
Cc00_g15990 Coffea canephora HOM05D001477 ORTHO05D003423 1.2e-07 62.0 253 25.7
Rhsim05G0177500 Rhododendron simsii HOM05D002667 ORTHO05D002909 1.6e-07 61.6 188 27.7
AUR62017679 Chenopodium quinoa HOM05D001477 ORTHO05D001182 2.7e-07 60.8 212 28.8
PGSC0003DMG400043072 Solanum tuberosum HOM05D006683 ORTHO05D008629 2.7e-07 60.8 83 47.0
arahy.Tifrunner.gnm1.ann1.SBEJ10 Arachis hypogaea HOM05D004014 ORTHO05D005890 4.6e-07 60.1 191 27.7
COL.COLO4_12879 Corchorus olitorius HOM05D001477 ORTHO05D001182 4.6e-07 60.1 237 24.9
QL05p010063 Quercus lobata HOM05D001477 ORTHO05D001182 4.6e-07 60.1 136 30.1
Ciclev10027565m.g Citrus clementina HOM05D001477 ORTHO05D001182 6.0e-07 59.7 194 32.5
Atru.chr1.2844 Acer truncatum HOM05D001477 ORTHO05D001182 7.8e-07 59.3 192 25.5
CAN.G635.11 Capsicum annuum HOM05D001477 ORTHO05D001182 7.8e-07 59.3 195 25.6
CAN.G635.5 Capsicum annuum HOM05D001477 ORTHO05D001182 7.8e-07 59.3 220 25.0
CSS0008515 Camellia sinensis var. sinensis HOM05D001477 ORTHO05D001182 1.0e-06 58.9 153 29.4
CAN.G635.20 Capsicum annuum HOM05D001477 ORTHO05D001182 1.0e-06 58.9 224 26.3
Manes.09G003200 Manihot esculenta HOM05D001477 ORTHO05D001182 1.0e-06 58.9 210 25.2
PGR083G1680 Punica granatum HOM05D001477 ORTHO05D001182 1.0e-06 58.9 210 28.1
HanXRQChr12g0365511 Helianthus annuus HOM05D001477 ORTHO05D001182 1.3e-06 58.5 163 29.4
Migut.E00561 Erythranthe guttata HOM05D005930 ORTHO05D003423 1.7e-06 58.2 239 27.6
Potri.012G099400 Populus trichocarpa HOM05D001477 ORTHO05D001182 1.7e-06 58.2 176 29.5
arahy.Tifrunner.gnm1.ann1.I5UGXE Arachis hypogaea HOM05D001477 ORTHO05D001182 3.0e-06 57.4 206 26.7
Sabra12G0072600 Salix brachista HOM05D001477 ORTHO05D001182 3.9e-06 57.0 170 29.4
Ciclev10027487m.g Citrus clementina HOM05D001477 ORTHO05D001182 5.1e-06 56.6 194 26.8
Peaxi162Scf00145g01529 Petunia axillaris HOM05D006683 ORTHO05D008629 5.1e-06 56.6 87 43.7
Rhsim04G0063700 Rhododendron simsii HOM05D001477 ORTHO05D011640 5.1e-06 56.6 216 25.5
Haze_18864 Corylus avellana HOM05D001477 ORTHO05D001182 6.6e-06 56.2 140 31.4
arahy.Tifrunner.gnm1.ann1.06TEM4 Arachis hypogaea HOM05D001477 ORTHO05D001182 8.7e-06 55.8 203 27.1


User provided reference genes

Program Settings