Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G10698.1 Capsicum annuum HOM05D002370 ORTHO05D003878 1.1e-72 276.6 138 100.0
Solyc01g106770.4 Solanum lycopersicum HOM05D002370 ORTHO05D003878 6.1e-60 234.2 121 99.2
Sopen01g049080 Solanum pennellii HOM05D002370 ORTHO05D003878 6.1e-60 234.2 121 99.2
PGSC0003DMG401025733 Solanum tuberosum HOM05D002370 ORTHO05D003878 6.1e-60 234.2 121 99.2
Peaxi162Scf00016g03243 Petunia axillaris HOM05D002370 ORTHO05D003878 1.4e-59 233.0 121 98.3
CAN.G1164.4 Capsicum annuum HOM05D002370 ORTHO05D003878 9.7e-58 226.9 132 88.6
Dinv09531 Davidia involucrata HOM05D002370 ORTHO05D003878 8.2e-57 223.8 121 93.4
Gohir.D01G009100 Gossypium hirsutum HOM05D002370 ORTHO05D003878 1.1e-56 223.4 121 93.4
Gorai.002G011200 Gossypium raimondii HOM05D002370 ORTHO05D003878 1.1e-56 223.4 121 93.4
Nn5g30713 Nelumbo nucifera HOM05D002370 ORTHO05D003878 1.8e-56 222.6 121 92.6
COL.COLO4_32473 Corchorus olitorius HOM05D002370 ORTHO05D003878 2.4e-56 222.2 121 92.6
Gohir.A01G009566 Gossypium hirsutum HOM05D002370 ORTHO05D003878 2.4e-56 222.2 121 92.6
Gohir.D12G018800 Gossypium hirsutum HOM05D002370 ORTHO05D003878 2.4e-56 222.2 121 93.4
Gorai.008G019100 Gossypium raimondii HOM05D002370 ORTHO05D003878 2.4e-56 222.2 121 93.4
CAN.G1164.1 Capsicum annuum HOM05D002370 ORTHO05D003878 4.1e-56 221.5 121 94.2
Thecc.02G120900 Theobroma cacao HOM05D002370 ORTHO05D003878 5.3e-56 221.1 121 91.7
Duzib132G1084 Durio zibethinus HOM05D002370 ORTHO05D003878 9.1e-56 220.3 121 91.7
PSO675G4735 Papaver somniferum HOM05D002370 ORTHO05D003878 9.1e-56 220.3 121 89.3
Phvul.002G049900 Phaseolus vulgaris HOM05D002370 ORTHO05D003878 9.1e-56 220.3 121 90.9
MELO3C018533.2 Cucumis melo HOM05D002370 ORTHO05D003878 1.2e-55 219.9 121 90.9
CsaV3_7G007670 Cucumis sativus L. HOM05D002370 ORTHO05D003878 1.2e-55 219.9 121 90.9
DCAR_003604 Daucus carota HOM05D002370 ORTHO05D003878 1.2e-55 219.9 121 90.9
Glyma.01G241300 Glycine max HOM05D002370 ORTHO05D003878 1.2e-55 219.9 121 90.1
Glyma.11G002600 Glycine max HOM05D002370 ORTHO05D003878 1.2e-55 219.9 121 90.1
HanXRQChr04g0107251 Helianthus annuus HOM05D002370 ORTHO05D003878 1.5e-55 219.5 121 91.7
Lj5C222G6 Lonicera japonica HOM05D002370 ORTHO05D003878 1.5e-55 219.5 121 90.1
Nitab4.5_0000772g0070 Nicotiana tabacum HOM05D002370 ORTHO05D003878 1.5e-55 219.5 121 93.4
Nitab4.5_0010974g0020 Nicotiana tabacum HOM05D002370 ORTHO05D003878 1.5e-55 219.5 121 93.4
PSO541G1630 Papaver somniferum HOM05D002370 ORTHO05D003878 1.5e-55 219.5 121 89.3
Aqoxy6G01518 Aquilegia oxysepala HOM05D002370 ORTHO05D003878 2.0e-55 219.2 121 89.3
Sed0018886 Sechium edule HOM05D002370 ORTHO05D003878 2.0e-55 219.2 121 90.9
ClCG02G007160 Citrullus lanatus HOM05D002370 ORTHO05D003878 2.6e-55 218.8 121 90.9
Gohir.A12G018200 Gossypium hirsutum HOM05D002370 ORTHO05D003878 2.6e-55 218.8 121 91.7
Cpa.g.sc106.24 Carica papaya HOM05D002370 ORTHO05D003878 7.7e-55 217.2 121 90.1
arahy.Tifrunner.gnm1.ann1.3J1H0B Arachis hypogaea HOM05D002370 ORTHO05D003878 1.0e-54 216.9 121 89.3
arahy.Tifrunner.gnm1.ann1.NYP183 Arachis hypogaea HOM05D002370 ORTHO05D003878 1.0e-54 216.9 121 89.3
FvH4_2g03080 Fragaria vesca HOM05D002370 ORTHO05D003878 1.0e-54 216.9 121 88.4
FAN15G3522 Fragaria x ananassa HOM05D002370 ORTHO05D003878 1.0e-54 216.9 121 88.4
FAN24G1227 Fragaria x ananassa HOM05D002370 ORTHO05D003878 1.0e-54 216.9 121 88.4
Lsat_1_v5_gn_4_143680 Lactuca sativa HOM05D002370 ORTHO05D003878 1.0e-54 216.9 121 90.1
VMungo1215G1081 Vigna mungo HOM05D002370 ORTHO05D003878 1.0e-54 216.9 121 89.3
Actinidia02446 Actinidia chinensis HOM05D002370 ORTHO05D003878 1.3e-54 216.5 121 90.9
ATR0753G079 Amborella trichopoda HOM05D002370 ORTHO05D003878 1.7e-54 216.1 121 89.3
FAN27G1380 Fragaria x ananassa HOM05D002370 ORTHO05D003878 2.2e-54 215.7 121 87.6
RcHm_v2.0_Chr6g0247951 Rosa chinensis HOM05D002370 ORTHO05D003878 2.2e-54 215.7 121 88.4
MSTRG.16667 Avicennia marina HOM05D002370 ORTHO05D003878 2.9e-54 215.3 121 88.4
ECA232G2594 Erigeron canadensis HOM05D002370 ORTHO05D003878 2.9e-54 215.3 121 89.3
FAN20G2522 Fragaria x ananassa HOM05D002370 ORTHO05D003878 2.9e-54 215.3 121 87.6
Lj1g0008728 Lotus japonicus HOM05D002370 ORTHO05D003878 2.9e-54 215.3 121 89.3
QL11p028985 Quercus lobata HOM05D002370 ORTHO05D003878 2.9e-54 215.3 121 86.8
THA.LOC104826500 Tarenaya hassleriana HOM05D002370 ORTHO05D003878 2.9e-54 215.3 121 88.4
Ciclev10027661m.g Citrus clementina HOM05D002370 ORTHO05D003878 3.8e-54 214.9 121 90.1
TAR381G0773 Trochodendron aralioides HOM05D002370 ORTHO05D003878 3.8e-54 214.9 121 88.4
CSS0028039 Camellia sinensis var. sinensis HOM05D002370 ORTHO05D003878 5.0e-54 214.5 121 90.1
MD00G1031100 Malus domestica HOM05D002370 ORTHO05D003878 6.5e-54 214.2 121 86.0
MD10G1112000 Malus domestica HOM05D002370 ORTHO05D003878 6.5e-54 214.2 121 86.0
Atru.chr4.144 Acer truncatum HOM05D002370 ORTHO05D003878 8.5e-54 213.8 121 87.6
Atru.chr4.155 Acer truncatum HOM05D002370 ORTHO05D003878 8.5e-54 213.8 121 87.6
HanXRQChr04g0107281 Helianthus annuus HOM05D002370 ORTHO05D003878 1.1e-53 213.4 121 90.1
Hma1.2p1_0661F.1_g197980 Hydrangea macrophylla HOM05D002370 ORTHO05D003878 1.1e-53 213.4 121 87.6
CSS0026275 Camellia sinensis var. sinensis HOM05D002370 ORTHO05D003878 1.9e-53 212.6 121 89.3
Prupe.8G151300 Prunus persica HOM05D002370 ORTHO05D003878 2.5e-53 212.2 121 86.0
CAN.G411.107 Capsicum annuum HOM05D002370 ORTHO05D003878 5.5e-53 211.1 118 91.5
Medtr5g005380 Medicago truncatula HOM05D002370 ORTHO05D003878 5.5e-53 211.1 121 87.6
Migut.B00477 Erythranthe guttata HOM05D002370 ORTHO05D003878 7.2e-53 210.7 121 88.4
Hma1.2p1_1051F.1_g252210 Hydrangea macrophylla HOM05D002370 ORTHO05D003878 7.2e-53 210.7 121 87.6
Psat4g229000 Pisum sativum HOM05D002370 ORTHO05D003878 7.2e-53 210.7 121 86.8
Ca_24363_v3 Cicer arietinum L. HOM05D002370 ORTHO05D003878 9.4e-53 210.3 121 87.6
CDE06G0012 Ceratophyllum demersum HOM05D002370 ORTHO05D003878 1.2e-52 209.9 121 86.8
Haze_10321 Corylus avellana HOM05D002370 ORTHO05D003878 1.2e-52 209.9 121 86.0
CiPaw.06G163300 Carya illinoinensis HOM05D002370 ORTHO05D003878 1.6e-52 209.5 121 87.6
DCAR_021938 Daucus carota HOM05D002370 ORTHO05D003878 1.6e-52 209.5 120 87.5
Thhalv10011174m.g Eutrema salsugineum HOM05D002370 ORTHO05D003878 1.6e-52 209.5 121 86.0
TPR.G8301 Trifolium pratense HOM05D002370 ORTHO05D003878 1.6e-52 209.5 121 86.0
Aa31LG10G4090 Aethionema arabicum HOM05D002370 ORTHO05D003878 2.7e-52 208.8 121 86.0
Lalb_Chr05g0210831 Lupinus albus HOM05D002370 ORTHO05D003878 2.7e-52 208.8 121 86.0
Cc02_g20170 Coffea canephora HOM05D002370 ORTHO05D003878 3.6e-52 208.4 121 86.0
Sp1g36890 Schrenkiella parvula HOM05D002370 ORTHO05D003878 3.6e-52 208.4 121 85.1
TWI59G1328 Tripterygium wilfordii HOM05D002370 ORTHO05D003878 3.6e-52 208.4 121 86.8
Zm00001eb285840 Zea mays HOM05D002370 ORTHO05D003878 3.6e-52 208.4 121 86.8
AL1G57600 Arabidopsis lyrata HOM05D002370 ORTHO05D003878 4.7e-52 208.0 121 86.0
AT1G50030 Arabidopsis thaliana HOM05D002370 ORTHO05D003878 4.7e-52 208.0 121 86.0
CAN.G289.59 Capsicum annuum HOM05D002370 ORTHO05D003878 4.7e-52 208.0 120 91.7
SGA_v2.0_scaffold519G52682 Striga asiatica HOM05D002370 ORTHO05D003878 4.7e-52 208.0 121 86.0
Carub.0001s3921 Capsella rubella HOM05D002370 ORTHO05D003878 8.0e-52 207.2 121 86.0
MD05G1107800 Malus domestica HOM05D002370 ORTHO05D003878 8.0e-52 207.2 121 83.5
Oeu028915.2 Olea europaea HOM05D002370 ORTHO05D003878 8.0e-52 207.2 121 86.0
PSO675G3080 Papaver somniferum HOM05D002370 ORTHO05D003878 1.0e-51 206.8 121 84.3
PSO732G0082 Papaver somniferum HOM05D002370 ORTHO05D003878 1.0e-51 206.8 121 84.3
HPP92_016412 Vanilla planifolia HOM05D002370 ORTHO05D003878 1.0e-51 206.8 121 86.8
Ah.01g024560 Amaranthus hybridus HOM05D002370 ORTHO05D003878 1.4e-51 206.5 121 84.3
Sc18g0007320 Simmondsia chinensis HOM05D002370 ORTHO05D003878 1.4e-51 206.5 121 85.1
SGA_v2.0_scaffold32G12979 Striga asiatica HOM05D002370 ORTHO05D003878 1.4e-51 206.5 121 86.0
TAR625G0605 Trochodendron aralioides HOM05D002370 ORTHO05D003878 3.9e-51 204.9 121 85.1
Os05g0235300 Oryza sativa ssp. japonica HOM05D002370 ORTHO05D003878 6.7e-51 204.1 121 83.5
BcaC08g43183 Brassica carinata HOM05D002370 ORTHO05D003878 8.8e-51 203.8 121 81.8
A06p03390 Brassica napus HOM05D002370 ORTHO05D003878 8.8e-51 203.8 121 81.8
BolC6t35612H Brassica oleracea HOM05D002370 ORTHO05D003878 8.8e-51 203.8 121 81.8
BraA06t23548Z Brassica rapa HOM05D002370 ORTHO05D003878 8.8e-51 203.8 121 81.8
AUR62027030 Chenopodium quinoa HOM05D002370 ORTHO05D003878 8.8e-51 203.8 121 84.3
AUR62030874 Chenopodium quinoa HOM05D002370 ORTHO05D003878 8.8e-51 203.8 121 84.3
Sabra16G0181000 Salix brachista HOM05D002370 ORTHO05D003878 8.8e-51 203.8 121 82.6
EL10Ac9g22169 Beta vulgaris HOM05D002370 ORTHO05D003878 1.1e-50 203.4 121 84.3
BcaB07g33455 Brassica carinata HOM05D002370 ORTHO05D003878 2.6e-50 202.2 121 81.0
SEGI_32787 Sequoiadendron giganteum HOM05D002370 ORTHO05D003878 5.7e-50 201.1 121 81.8
Rhsim11G0149700 Rhododendron simsii HOM05D002370 ORTHO05D003878 7.4e-50 200.7 121 86.0
CiPaw.05G021600 Carya illinoinensis HOM05D002370 ORTHO05D003878 9.7e-50 200.3 121 82.6
Potri.001G289200 Populus trichocarpa HOM05D002370 ORTHO05D003878 9.7e-50 200.3 121 81.8
BraA05t20943Z Brassica rapa HOM05D002370 ORTHO05D003878 2.2e-49 199.1 115 85.2
C06p04900 Brassica napus HOM05D002370 ORTHO05D003878 3.7e-49 198.4 121 80.2
PGR142G4285 Punica granatum HOM05D002370 ORTHO05D003878 3.7e-49 198.4 121 82.6
BcaC05g27452 Brassica carinata HOM05D002370 ORTHO05D003878 4.8e-49 198.0 115 84.3
A05p20360 Brassica napus HOM05D002370 ORTHO05D003878 4.8e-49 198.0 115 84.3
C05p34110 Brassica napus HOM05D002370 ORTHO05D003878 4.8e-49 198.0 115 84.3
BolC5t32146H Brassica oleracea HOM05D002370 ORTHO05D003878 4.8e-49 198.0 115 84.3
CARHR040140 Cardamine hirsuta HOM05D002370 ORTHO05D003878 4.8e-49 198.0 121 81.8
Eucgr.I02503 Eucalyptus grandis HOM05D002370 ORTHO05D003878 4.8e-49 198.0 121 81.8
Manes.07G052660 Manihot esculenta HOM05D002370 ORTHO05D003878 6.3e-49 197.6 121 81.8
SEGI_12344 Sequoiadendron giganteum HOM05D002370 ORTHO05D003878 7.0e-48 194.1 121 80.2
Sabra09G0065200 Salix brachista HOM05D002370 ORTHO05D003878 9.1e-48 193.7 121 80.2
Potri.009G084500 Populus trichocarpa HOM05D002370 ORTHO05D003878 2.0e-47 192.6 121 80.2
CAN.G1627.3 Capsicum annuum HOM05D002370 ORTHO05D003878 3.5e-47 191.8 112 92.0
SHI03324 Sapria himalayana HOM05D002370 ORTHO05D003878 3.5e-47 191.8 121 80.2
Mapoly0047s0119 Marchantia polymorpha HOM05D002370 ORTHO05D003878 2.2e-41 172.6 123 73.2
AagrBONN_evm.TU.Sc2ySwM_228.5412 Anthoceros agrestis HOM05D002370 ORTHO05D003878 2.8e-41 172.2 117 73.5
Pp3c6_4910 Physcomitrium patens HOM05D002370 ORTHO05D003878 1.4e-40 169.9 121 71.1
GSVIVG01037040001 Vitis vinifera HOM05D002370 ORTHO05D003878 4.1e-40 168.3 217 48.4
CAN.G606.79 Capsicum annuum HOM05D002370 ORTHO05D020284 1.3e-38 163.3 86 96.5
BcaB02g11126 Brassica carinata HOM05D002370 ORTHO05D003878 8.5e-38 160.6 107 77.6
SMO147G0225 Selaginella moellendorffii HOM05D002370 ORTHO05D003878 2.7e-36 155.6 121 68.6
unitig_60.g25464 Utricularia gibba HOM05D002370 ORTHO05D003878 5.2e-35 151.4 121 67.8
Oeu025303.1 Olea europaea HOM05D002370 ORTHO05D003878 6.3e-33 144.4 83 88.0
PRCOL_00002418 Prasinoderma coloniale HOM05D002370 ORTHO05D003878 5.4e-32 141.4 121 59.5
CAN.G1627.7 Capsicum annuum HOM05D002370 ORTHO05D003878 1.0e-30 137.1 121 66.1
MCO06G142 Micromonas commoda HOM05D002370 ORTHO05D003878 6.6e-30 134.4 112 62.5
Cre09.g400553 Chlamydomonas reinhardtii HOM05D002370 ORTHO05D003878 2.6e-26 122.5 118 54.2
SalBow6G1889 Salvia bowleyana HOM05D002370 ORTHO05D003878 1.7e-22 109.8 65 80.0
Atru.chr5.2257 Acer truncatum HOM05D002370 ORTHO05D003878 2.9e-22 109.0 59 89.8
CDE04G3197 Ceratophyllum demersum HOM05D002370 ORTHO05D020284 2.9e-22 109.0 66 84.8
vmacro01937 Vaccinium macrocarpon HOM05D002370 ORTHO05D003878 2.9e-22 109.0 64 85.9
Lalb_Chr16g0376331 Lupinus albus HOM05D002370 ORTHO05D020284 3.9e-22 108.6 56 94.6
CBR_g23926 Chara braunii HOM05D002370 ORTHO05D003878 5.0e-22 108.2 125 45.6
Cfa026368 Carpinus fangiana HOM05D002370 ORTHO05D003878 3.4e-18 95.5 112 45.5
FAN20G0378 Fragaria x ananassa HOM05D002370 ORTHO05D020284 1.4e-16 90.1 112 45.5
Haze_26242 Corylus avellana HOM05D002370 ORTHO05D003878 2.7e-15 85.9 108 39.8
FvH4_2g06710 Fragaria vesca HOM05D002370 ORTHO05D020284 5.4e-08 61.6 49 61.2
FAN24G2034 Fragaria x ananassa HOM05D002370 ORTHO05D020284 5.4e-08 61.6 37 78.4
Lsat_1_v5_gn_5_137761 Lactuca sativa HOM05D002370 ORTHO05D020284 2.7e-07 59.3 32 87.5


User provided reference genes

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