Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1061.1 Capsicum annuum HOM05D003379 ORTHO05D003862 4.7e-194 681.0 346 100.0
Sopen02g036510 Solanum pennellii HOM05D003379 ORTHO05D003862 3.4e-128 462.2 362 69.3
Solyc02g091940.3 Solanum lycopersicum HOM05D003379 ORTHO05D003862 3.8e-127 458.8 362 69.1
PGSC0003DMG400021424 Solanum tuberosum HOM05D003379 ORTHO05D003862 2.0e-120 436.4 350 68.6
Nitab4.5_0001409g0240 Nicotiana tabacum HOM05D000225 ORTHO05D001595 8.8e-116 421.0 357 67.5
Nitab4.5_0007209g0030 Nicotiana tabacum HOM05D000225 ORTHO05D001595 2.6e-112 409.5 338 68.6
Dinv25618 Davidia involucrata HOM05D003379 ORTHO05D003862 1.4e-57 227.6 452 38.7
Oeu027918.1 Olea europaea HOM05D003379 ORTHO05D003862 2.1e-56 223.8 370 43.2
Manes.11G076800 Manihot esculenta HOM05D003379 ORTHO05D003862 1.4e-52 211.1 447 36.0
PGR142G1656 Punica granatum HOM05D003379 ORTHO05D003862 2.4e-52 210.3 436 36.2
CiPaw.04G001500 Carya illinoinensis HOM05D003379 ORTHO05D003862 1.5e-51 207.6 427 37.9
Potri.002G238100 Populus trichocarpa HOM05D003379 ORTHO05D003862 1.9e-49 200.7 440 35.7
Atru.chr6.2693 Acer truncatum HOM05D003379 ORTHO05D003862 5.4e-49 199.1 418 36.6
QL02p069539 Quercus lobata HOM05D003379 ORTHO05D003862 5.4e-49 199.1 450 35.1
Lsat_1_v5_gn_0_41321 Lactuca sativa HOM05D003379 ORTHO05D003862 1.2e-48 198.0 374 38.2
TAR475G0001 Trochodendron aralioides HOM05D003379 ORTHO05D003862 1.6e-48 197.6 437 36.6
Rhsim08G0039200 Rhododendron simsii HOM05D003379 ORTHO05D003862 3.5e-48 196.4 449 34.1
Lj7A617T72 Lonicera japonica HOM05D003379 ORTHO05D003862 6.0e-48 195.7 438 37.4
Ciclev10015333m.g Citrus clementina HOM05D003379 ORTHO05D003862 7.8e-48 195.3 431 35.3
vmacro18379 Vaccinium macrocarpon HOM05D003379 ORTHO05D003862 7.8e-48 195.3 449 34.1
MD09G1002700 Malus domestica HOM05D003379 ORTHO05D003862 1.3e-47 194.5 438 34.9
Sabra02G0181500 Salix brachista HOM05D003379 ORTHO05D003862 2.3e-47 193.7 441 33.8
COL.COLO4_13374 Corchorus olitorius HOM05D003379 ORTHO05D003862 3.9e-47 193.0 451 37.0
MD17G1006900 Malus domestica HOM05D003379 ORTHO05D003862 6.6e-47 192.2 433 35.6
TAR374G0325 Trochodendron aralioides HOM05D003379 ORTHO05D003862 8.7e-47 191.8 445 36.2
Sed0002814 Sechium edule HOM05D003379 ORTHO05D003862 1.1e-46 191.4 433 35.1
Dinv19304 Davidia involucrata HOM05D003379 ORTHO05D003862 1.5e-46 191.0 441 35.1
MELO3C014781.2 Cucumis melo HOM05D003379 ORTHO05D003862 2.5e-46 190.3 434 34.6
Prupe.3G313500 Prunus persica HOM05D003379 ORTHO05D003862 3.3e-46 189.9 443 35.7
FAN14G1380 Fragaria x ananassa HOM05D003379 ORTHO05D003862 1.3e-45 188.0 429 34.5
TWI32G0366 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 1.3e-45 188.0 429 35.2
ClCG05G012630 Citrullus lanatus HOM05D003379 ORTHO05D003862 8.1e-45 185.3 450 34.0
Sed0021165 Sechium edule HOM05D003379 ORTHO05D003862 1.4e-44 184.5 445 33.7
Actinidia36245 Actinidia chinensis HOM05D003379 ORTHO05D003862 3.1e-44 183.3 430 35.1
FAN09G0861 Fragaria x ananassa HOM05D003379 ORTHO05D003862 3.1e-44 183.3 430 33.7
Thecc.04G047800 Theobroma cacao HOM05D003379 ORTHO05D003862 5.3e-44 182.6 458 34.7
Cfa007165 Carpinus fangiana HOM05D003379 ORTHO05D003862 6.9e-44 182.2 447 34.9
Cpa.g.sc70.68 Carica papaya HOM05D003379 ORTHO05D003862 9.0e-44 181.8 444 35.8
FvH4_6g54290 Fragaria vesca HOM05D003379 ORTHO05D003862 1.2e-43 181.4 433 33.9
CsaV3_3G027780 Cucumis sativus L. HOM05D003379 ORTHO05D003862 2.0e-43 180.6 437 33.2
Duzib187G1855 Durio zibethinus HOM05D003379 ORTHO05D003862 3.4e-43 179.9 444 35.1
MSTRG.2062 Avicennia marina HOM05D003379 ORTHO05D003862 5.8e-43 179.1 454 35.5
Haze_14949 Corylus avellana HOM05D003379 ORTHO05D003862 1.7e-42 177.6 457 33.5
FAN05G5138 Fragaria x ananassa HOM05D003379 ORTHO05D003862 2.9e-42 176.8 429 32.9
Dinv01473 Davidia involucrata HOM05D003379 ORTHO05D003862 4.9e-42 176.0 430 36.0
Gohir.A07G232700 Gossypium hirsutum HOM05D003379 ORTHO05D003862 4.9e-42 176.0 454 35.2
DCAR_002970 Daucus carota HOM05D003379 ORTHO05D003862 1.1e-41 174.9 422 33.2
Sc03g0005220 Simmondsia chinensis HOM05D003379 ORTHO05D003862 1.1e-41 174.9 410 34.6
Potri.014G143800 Populus trichocarpa HOM05D003379 ORTHO05D003862 4.2e-41 172.9 441 31.5
Gohir.D07G239900 Gossypium hirsutum HOM05D003379 ORTHO05D003862 5.4e-41 172.6 452 34.1
Gorai.001G276100 Gossypium raimondii HOM05D003379 ORTHO05D003862 5.4e-41 172.6 450 34.4
Migut.E00693 Erythranthe guttata HOM05D003379 ORTHO05D003862 2.1e-40 170.6 452 34.7
CiPaw.06G109000 Carya illinoinensis HOM05D003379 ORTHO05D003862 3.5e-40 169.9 435 34.9
A10p24430 Brassica napus HOM05D003379 ORTHO05D003862 1.3e-39 167.9 413 36.1
BraA10t44509Z Brassica rapa HOM05D003379 ORTHO05D003862 3.9e-39 166.4 412 35.9
Cc07_g01280 Coffea canephora HOM05D003379 ORTHO05D003862 3.9e-39 166.4 496 30.6
Eucgr.I02446 Eucalyptus grandis HOM05D003379 ORTHO05D003862 1.9e-38 164.1 457 32.4
BolC9t59151H Brassica oleracea HOM05D003379 ORTHO05D003862 2.5e-38 163.7 416 34.1
C09p63160 Brassica napus HOM05D003379 ORTHO05D003862 4.3e-38 162.9 416 34.1
Duzib147G0361 Durio zibethinus HOM05D003379 ORTHO05D003862 7.4e-38 162.2 371 36.9
Sp6g30030 Schrenkiella parvula HOM05D003379 ORTHO05D003862 7.4e-38 162.2 414 34.5
EL10Ac6g13403 Beta vulgaris HOM05D003379 ORTHO05D003862 6.2e-37 159.1 479 30.9
QL03p049546 Quercus lobata HOM05D003379 ORTHO05D003862 9.0e-36 155.2 427 34.4
Ah.03g136390 Amaranthus hybridus HOM05D003379 ORTHO05D003862 2.6e-35 153.7 444 31.8
VMungo1383G3656 Vigna mungo HOM05D003379 ORTHO05D003862 3.4e-35 153.3 415 33.0
CDE05G0540 Ceratophyllum demersum HOM05D003379 ORTHO05D003862 5.8e-35 152.5 385 31.9
HanXRQChr17g0550921 Helianthus annuus HOM05D003379 ORTHO05D003862 9.9e-35 151.8 373 33.2
Thhalv10013725m.g Eutrema salsugineum HOM05D003379 ORTHO05D003862 1.7e-34 151.0 411 33.6
Aa31LG11G15410 Aethionema arabicum HOM05D003379 ORTHO05D003862 2.2e-34 150.6 425 30.8
Nn4g22138 Nelumbo nucifera HOM05D003379 ORTHO05D003862 4.9e-34 149.4 392 34.2
Carub.0006s1216 Capsella rubella HOM05D003379 ORTHO05D003862 1.1e-33 148.3 420 33.1
Haze_12496 Corylus avellana HOM05D003379 ORTHO05D003862 1.9e-33 147.5 432 32.2
Aqoxy6G00186 Aquilegia oxysepala HOM05D003379 ORTHO05D003862 2.5e-33 147.1 423 32.4
CANSAT64G2275 Cannabis sativa HOM05D003379 ORTHO05D003862 4.2e-33 146.4 413 32.0
Potri.003G163100 Populus trichocarpa HOM05D003379 ORTHO05D003862 4.2e-33 146.4 442 32.4
ECA246G3772 Erigeron canadensis HOM05D003379 ORTHO05D003862 2.7e-32 143.7 408 31.1
Phvul.001G084300 Phaseolus vulgaris HOM05D003379 ORTHO05D003862 2.7e-32 143.7 431 32.0
Ciclev10005064m.g Citrus clementina HOM05D003379 ORTHO05D003862 4.6e-32 142.9 425 32.0
Sabra03G0118600 Salix brachista HOM05D003379 ORTHO05D003862 1.0e-31 141.7 442 32.1
SGA_v2.0_scaffold306G48013 Striga asiatica HOM05D003379 ORTHO05D003862 3.0e-31 140.2 445 30.6
AL6G24630 Arabidopsis lyrata HOM05D003379 ORTHO05D003862 1.5e-30 137.9 417 33.1
Actinidia30590 Actinidia chinensis HOM05D003379 ORTHO05D003862 2.5e-30 137.1 431 31.1
CDE05G1535 Ceratophyllum demersum HOM05D003379 ORTHO05D003862 2.5e-30 137.1 388 31.4
Lalb_Chr14g0364121 Lupinus albus HOM05D003379 ORTHO05D003862 9.6e-30 135.2 431 28.8
AT5G13970 Arabidopsis thaliana HOM05D003379 ORTHO05D003862 1.6e-29 134.4 418 29.9
Ca_08145_v3 Cicer arietinum L. HOM05D003379 ORTHO05D003862 6.2e-29 132.5 426 30.8
COL.COLO4_21771 Corchorus olitorius HOM05D003379 ORTHO05D003862 8.2e-29 132.1 436 30.0
Hund04187 Selenicereus undatus HOM05D003379 ORTHO05D003862 8.2e-29 132.1 439 30.8
Peaxi162Scf00171g00621 Petunia axillaris HOM05D003379 ORTHO05D003862 1.1e-28 131.7 414 30.7
THA.LOC104825464 Tarenaya hassleriana HOM05D003379 ORTHO05D003862 1.1e-28 131.7 352 31.8
THA.LOC104825281 Tarenaya hassleriana HOM05D003379 ORTHO05D003862 1.4e-28 131.3 429 29.4
Glyma.16G047900 Glycine max HOM05D003379 ORTHO05D003862 1.8e-28 131.0 422 29.6
Sc17g0006750 Simmondsia chinensis HOM05D003379 ORTHO05D003862 1.8e-28 131.0 431 30.2
Medtr7g084070 Medicago truncatula HOM05D003379 ORTHO05D003862 2.4e-28 130.6 385 30.4
Actinidia22119 Actinidia chinensis HOM05D003379 ORTHO05D003862 3.1e-28 130.2 420 30.2
CSS0041611 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 3.1e-28 130.2 412 31.3
AUR62037825 Chenopodium quinoa HOM05D003379 ORTHO05D003862 3.1e-28 130.2 384 32.3
AUR62017428 Chenopodium quinoa HOM05D003379 ORTHO05D003862 2.0e-27 127.5 306 35.0
Nitab4.5_0002116g0010 Nicotiana tabacum HOM05D003379 ORTHO05D003862 3.4e-27 126.7 418 30.9
Atru.chr12.1405 Acer truncatum HOM05D003379 ORTHO05D003862 7.6e-27 125.6 436 29.1
Glyma.19G103400 Glycine max HOM05D003379 ORTHO05D003862 7.6e-27 125.6 420 29.5
TWI75G1860 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 1.0e-26 125.2 434 31.1
Ah.09g236390 Amaranthus hybridus HOM05D003379 ORTHO05D003862 1.3e-26 124.8 431 30.4
CSS0045312 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 1.3e-26 124.8 332 33.4
MBI07_g41898_MAGBIO Magnolia biondii HOM05D003379 ORTHO05D003862 2.9e-26 123.6 443 29.6
PSO017G0829 Papaver somniferum HOM05D003379 ORTHO05D003862 3.8e-26 123.2 441 28.8
EL10Ac8g20553 Beta vulgaris HOM05D003379 ORTHO05D003862 8.4e-26 122.1 421 29.7
PSO478G4908 Papaver somniferum HOM05D003379 ORTHO05D003862 8.4e-26 122.1 442 28.7
CAN.G7.8 Capsicum annuum HOM05D003379 ORTHO05D003862 1.1e-25 121.7 422 30.3
SalBow6G5409 Salvia bowleyana HOM05D003379 ORTHO05D003862 1.9e-25 120.9 314 32.8
Cfa009444 Carpinus fangiana HOM05D003379 ORTHO05D003862 2.5e-25 120.6 325 31.7
Hma1.2p1_0787F.1_g217850 Hydrangea macrophylla HOM05D003379 ORTHO05D003862 2.5e-25 120.6 455 30.1
AUR62014693 Chenopodium quinoa HOM05D003379 ORTHO05D003862 7.1e-25 119.0 414 30.4
Prupe.1G216200 Prunus persica HOM05D003379 ORTHO05D003862 7.1e-25 119.0 433 28.2
Duzib132G1102 Durio zibethinus HOM05D003379 ORTHO05D003862 9.3e-25 118.6 431 27.4
unitig_22.g5626 Utricularia gibba HOM05D003379 ORTHO05D003862 1.2e-24 118.2 400 31.0
PGSC0003DMG400004243 Solanum tuberosum HOM05D003379 ORTHO05D003862 1.0e-23 115.2 420 29.8
Lj1g0011786 Lotus japonicus HOM05D003379 ORTHO05D003862 3.0e-23 113.6 446 26.7
Manes.08G101800 Manihot esculenta HOM05D003379 ORTHO05D003862 3.0e-23 113.6 441 30.6
Nitab4.5_0005424g0010 Nicotiana tabacum HOM05D003379 ORTHO05D003862 8.7e-23 112.1 414 30.4
RcHm_v2.0_Chr4g0428951 Rosa chinensis HOM05D003379 ORTHO05D003862 8.7e-23 112.1 415 29.6
Hund23589 Selenicereus undatus HOM05D003379 ORTHO05D003862 1.1e-22 111.7 439 27.1
Sopen04g017060 Solanum pennellii HOM05D003379 ORTHO05D003862 1.9e-22 110.9 418 29.4
MD13G1129900 Malus domestica HOM05D003379 ORTHO05D003862 5.7e-22 109.4 398 28.1
Psat3g093320 Pisum sativum HOM05D003379 ORTHO05D003862 7.4e-22 109.0 429 28.4
Rhsim12G0017700 Rhododendron simsii HOM05D003379 ORTHO05D003862 7.4e-22 109.0 436 28.7
Solyc04g024520.3 Solanum lycopersicum HOM05D003379 ORTHO05D003862 9.7e-22 108.6 418 29.2
Gorai.005G196800 Gossypium raimondii HOM05D003379 ORTHO05D003862 1.3e-21 108.2 436 27.1
HanXRQChr12g0384731 Helianthus annuus HOM05D003379 ORTHO05D003862 2.2e-21 107.5 394 30.5
arahy.Tifrunner.gnm1.ann1.M1DIX9 Arachis hypogaea HOM05D003379 ORTHO05D003862 3.7e-21 106.7 232 36.6
TWI36G1473 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 6.3e-21 105.9 433 30.0
Gohir.D02G175200 Gossypium hirsutum HOM05D003379 ORTHO05D003862 1.4e-20 104.8 435 27.1
arahy.Tifrunner.gnm1.ann1.JRYW6U Arachis hypogaea HOM05D003379 ORTHO05D003862 1.8e-20 104.4 431 26.7
CARHR199420 Cardamine hirsuta HOM05D003379 ORTHO05D003862 1.2e-19 101.7 257 31.9
Lsat_1_v5_gn_4_1521 Lactuca sativa HOM05D003379 ORTHO05D003862 3.4e-19 100.1 291 33.0
ATR0582G197 Amborella trichopoda HOM05D003379 ORTHO05D003862 4.5e-19 99.8 412 27.2
FvH4_4g22730 Fragaria vesca HOM05D003379 ORTHO05D003862 4.5e-19 99.8 409 27.6
Manes.09G187602 Manihot esculenta HOM05D003379 ORTHO05D003862 4.5e-19 99.8 406 29.3
Thecc.02G193300 Theobroma cacao HOM05D003379 ORTHO05D003862 4.5e-19 99.8 435 29.0
FAN12G1414 Fragaria x ananassa HOM05D003379 ORTHO05D003862 7.7e-19 99.0 413 27.6
FAN07G0868 Fragaria x ananassa HOM05D003379 ORTHO05D003862 1.0e-18 98.6 415 28.0
BraA10t44552Z Brassica rapa HOM05D003379 ORTHO05D003862 2.2e-18 97.4 343 29.2
Lalb_Chr22g0359971 Lupinus albus HOM05D003379 ORTHO05D003862 2.9e-18 97.1 433 25.9
FAN17G1075 Fragaria x ananassa HOM05D003379 ORTHO05D003862 6.5e-18 95.9 414 27.5
Aa31LG3G14350 Aethionema arabicum HOM05D003379 ORTHO05D003862 1.4e-17 94.7 423 27.2
HPP92_027984 Vanilla planifolia HOM05D003379 ORTHO05D003862 1.4e-17 94.7 346 29.8
Thhalv10013755m.g Eutrema salsugineum HOM05D003379 ORTHO05D003862 1.9e-17 94.4 415 25.8
AL6G23930 Arabidopsis lyrata HOM05D003379 ORTHO05D003862 5.5e-17 92.8 408 26.5
C09p63750 Brassica napus HOM05D003379 ORTHO05D003862 5.5e-17 92.8 342 27.8
BcaC04g19123 Brassica carinata HOM05D003379 ORTHO05D003862 1.6e-16 91.3 420 26.7
A10p24890 Brassica napus HOM05D003379 ORTHO05D003862 6.1e-16 89.4 343 28.0
CARHR200130 Cardamine hirsuta HOM05D003379 ORTHO05D003862 6.1e-16 89.4 336 30.4
GSVIVG01001080001 Vitis vinifera HOM05D003379 ORTHO05D003862 7.9e-16 89.0 416 28.1
Sp6g30680 Schrenkiella parvula HOM05D003379 ORTHO05D003862 1.8e-15 87.8 407 25.1
RcHm_v2.0_Chr3g0475791 Rosa chinensis HOM05D003379 ORTHO05D003862 3.9e-15 86.7 269 31.6
Carub.0006s1148 Capsella rubella HOM05D003379 ORTHO05D003862 1.7e-13 81.3 314 29.0
BcaNung03374 Brassica carinata HOM05D003379 ORTHO05D003862 2.8e-13 80.5 184 35.9
AUR62012502 Chenopodium quinoa HOM05D003379 ORTHO05D003862 4.8e-13 79.7 295 28.8
FAN05G5404 Fragaria x ananassa HOM05D003379 ORTHO05D003862 6.3e-13 79.3 265 32.1
Gohir.A03G152100 Gossypium hirsutum HOM05D003379 ORTHO05D003862 2.4e-12 77.4 419 25.1
FvH4_6g20211 Fragaria vesca HOM05D003379 ORTHO05D003862 6.9e-12 75.9 259 29.7
ECA234G2936 Erigeron canadensis HOM05D003379 ORTHO05D003862 2.6e-11 73.9 405 27.9
AT5G13310 Arabidopsis thaliana HOM05D003379 ORTHO05D003862 1.0e-10 72.0 189 32.3
BcaC04g20129 Brassica carinata HOM05D003379 ORTHO05D003862 1.3e-10 71.6 179 34.6
Mapoly0001s0546 Marchantia polymorpha HOM05D003379 ORTHO05D003862 3.2e-09 67.0 110 41.8
Zm00001eb421370 Zea mays HOM05D003379 ORTHO05D003862 1.2e-08 65.1 310 26.5
HPP92_006450 Vanilla planifolia HOM05D003379 ORTHO05D003862 1.6e-08 64.7 269 26.8
BcaC01g02664 Brassica carinata HOM05D003379 ORTHO05D003862 2.1e-08 64.3 85 42.4
RcHm_v2.0_Chr2g0176501 Rosa chinensis HOM05D003379 ORTHO05D003862 4.7e-08 63.2 148 33.8
C03p62180 Brassica napus HOM05D003379 ORTHO05D003862 7.9e-08 62.4 85 41.2
BolC3t18480H Brassica oleracea HOM05D003379 ORTHO05D003862 7.9e-08 62.4 85 41.2
vmacro01023 Vaccinium macrocarpon HOM05D003379 ORTHO05D003862 1.4e-07 61.6 419 27.2
Zm00001eb084870 Zea mays HOM05D003379 ORTHO05D003862 2.3e-07 60.8 409 22.2
FAN05G4320 Fragaria x ananassa HOM05D003379 ORTHO05D003862 5.1e-07 59.7 144 37.5
SalBow6G4465 Salvia bowleyana HOM05D003379 ORTHO05D003862 5.1e-07 59.7 154 33.8
AagrBONN_evm.TU.Sc2ySwM_369.605 Anthoceros agrestis HOM05D003379 ORTHO05D003862 6.7e-07 59.3 404 24.0
CARHR199410 Cardamine hirsuta HOM05D003379 ORTHO05D003862 3.3e-06 57.0 121 39.7
SMO117G0242 Selaginella moellendorffii HOM05D002493 ORTHO05D003175 3.3e-06 57.0 388 23.5


User provided reference genes

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