Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G106.25 Capsicum annuum HOM05D005802 ORTHO05D006992 5.2e-140 501.1 267 100.0
PGSC0003DMG400007022 Solanum tuberosum HOM05D005802 ORTHO05D006992 1.0e-127 460.3 267 91.4
Solyc05g050900.4 Solanum lycopersicum HOM05D005802 ORTHO05D006992 1.3e-127 459.9 267 91.4
Sopen05g029380 Solanum pennellii HOM05D005802 ORTHO05D006992 5.0e-127 458.0 267 91.0
Peaxi162Scf01052g00014 Petunia axillaris HOM05D005802 ORTHO05D006992 9.1e-121 437.2 267 84.6
Nitab4.5_0001329g0060 Nicotiana tabacum HOM05D005802 ORTHO05D006992 1.6e-112 409.8 257 80.9
MSTRG.17165 Avicennia marina HOM05D005802 ORTHO05D006992 6.6e-103 377.9 265 73.6
Migut.B01600 Erythranthe guttata HOM05D005802 ORTHO05D006992 5.8e-99 364.8 265 69.8
CSS0000774 Camellia sinensis var. sinensis HOM05D005802 ORTHO05D006992 1.7e-98 363.2 269 70.3
SalBow5G5068 Salvia bowleyana HOM05D005802 ORTHO05D006992 7.1e-97 357.8 265 68.7
Rhsim01G0150000 Rhododendron simsii HOM05D005802 ORTHO05D006992 2.7e-96 355.9 270 69.6
CiPaw.13G033000 Carya illinoinensis HOM05D005802 ORTHO05D006992 7.8e-96 354.4 270 70.0
COL.COLO4_12497 Corchorus olitorius HOM05D005802 ORTHO05D006992 1.7e-95 353.2 274 71.5
Actinidia12678 Actinidia chinensis HOM05D005802 ORTHO05D006992 5.1e-95 351.7 264 70.5
Duzib133G1160 Durio zibethinus HOM05D005802 ORTHO05D006992 6.6e-95 351.3 273 70.0
Nitab4.5_0005050g0030 Nicotiana tabacum HOM05D005802 ORTHO05D006992 6.6e-95 351.3 265 71.7
Ciclev10021687m.g Citrus clementina HOM05D005802 ORTHO05D006992 5.6e-94 348.2 269 69.9
DCAR_025098 Daucus carota HOM05D005802 ORTHO05D006992 6.2e-93 344.7 261 70.9
Cpa.g.sc49.162 Carica papaya HOM05D005802 ORTHO05D006992 1.8e-92 343.2 272 70.2
QL04p039160 Quercus lobata HOM05D005802 ORTHO05D006992 1.8e-92 343.2 263 70.3
TAR375G0577 Trochodendron aralioides HOM05D005802 ORTHO05D006992 2.3e-92 342.8 268 68.3
Gohir.D12G097200 Gossypium hirsutum HOM05D005802 ORTHO05D006992 4.0e-92 342.0 269 69.5
Sc02g0002770 Simmondsia chinensis HOM05D005802 ORTHO05D006992 8.9e-92 340.9 270 68.5
Thecc.01G381900 Theobroma cacao HOM05D005802 ORTHO05D006992 8.9e-92 340.9 272 69.9
Atru.chr5.259 Acer truncatum HOM05D005802 ORTHO05D006992 1.2e-91 340.5 270 68.9
AUR62013665 Chenopodium quinoa HOM05D005802 ORTHO05D006992 1.5e-91 340.1 271 66.8
Haze_02673 Corylus avellana HOM05D005802 ORTHO05D006992 1.5e-91 340.1 274 66.8
Gohir.A12G094400 Gossypium hirsutum HOM05D005802 ORTHO05D006992 1.5e-91 340.1 269 68.8
GSVIVG01027639001 Vitis vinifera HOM05D005802 ORTHO05D006992 1.5e-91 340.1 270 67.8
arahy.Tifrunner.gnm1.ann1.I9SF1K Arachis hypogaea HOM05D005802 ORTHO05D006992 2.6e-91 339.3 266 66.5
Nn6g34003 Nelumbo nucifera HOM05D005802 ORTHO05D006992 9.9e-91 337.4 270 67.0
Gorai.008G105800 Gossypium raimondii HOM05D005802 ORTHO05D006992 1.3e-90 337.0 268 68.3
Lj3g0015572 Lotus japonicus HOM05D005802 ORTHO05D006992 2.2e-90 336.3 271 66.1
Manes.05G048500 Manihot esculenta HOM05D005802 ORTHO05D006992 4.9e-90 335.1 270 66.7
Potri.014G060000 Populus trichocarpa HOM05D005802 ORTHO05D006992 4.9e-90 335.1 269 68.0
Prupe.2G138600 Prunus persica HOM05D005802 ORTHO05D006992 1.1e-89 334.0 267 65.9
PGR042G3152 Punica granatum HOM05D005802 ORTHO05D006992 1.1e-89 334.0 271 65.3
THA.LOC104802463 Tarenaya hassleriana HOM05D005802 ORTHO05D006992 1.1e-89 334.0 273 66.7
MD02G1209900 Malus domestica HOM05D005802 ORTHO05D006992 1.4e-89 333.6 267 65.9
CANSAT56G0664 Cannabis sativa HOM05D005802 ORTHO05D006992 1.9e-89 333.2 272 66.5
Lsat_1_v5_gn_4_44621 Lactuca sativa HOM05D005802 ORTHO05D006992 3.2e-89 332.4 272 65.1
BolC8t51149H Brassica oleracea HOM05D005802 ORTHO05D006992 4.1e-89 332.0 270 66.3
Aa31LG10G14950 Aethionema arabicum HOM05D005802 ORTHO05D006992 7.1e-89 331.3 273 64.8
Eucgr.D02489 Eucalyptus grandis HOM05D005802 ORTHO05D006992 4.6e-88 328.6 270 65.6
A09p52850 Brassica napus HOM05D005802 ORTHO05D006992 6.0e-88 328.2 273 64.8
C08p35600 Brassica napus HOM05D005802 ORTHO05D006992 6.0e-88 328.2 273 64.8
AT3G60660 Arabidopsis thaliana HOM05D005802 ORTHO05D006992 1.0e-87 327.4 273 65.9
Phvul.010G077700 Phaseolus vulgaris HOM05D005802 ORTHO05D006992 1.0e-87 327.4 271 66.1
CARHR171060 Cardamine hirsuta HOM05D005802 ORTHO05D006992 1.3e-87 327.0 273 65.9
Cc02_g24280 Coffea canephora HOM05D005802 ORTHO05D006992 1.3e-87 327.0 269 63.6
HanXRQChr03g0088101 Helianthus annuus HOM05D005802 ORTHO05D006992 1.7e-87 326.6 273 65.2
BcaC07g40584 Brassica carinata HOM05D005802 ORTHO05D006992 3.9e-87 325.5 276 65.2
AL5G42970 Arabidopsis lyrata HOM05D005802 ORTHO05D006992 8.6e-87 324.3 273 65.2
Dinv44124 Davidia involucrata HOM05D005802 ORTHO05D006992 1.5e-86 323.6 256 67.6
arahy.Tifrunner.gnm1.ann1.GQKS8P Arachis hypogaea HOM05D005802 ORTHO05D006992 4.3e-86 322.0 302 59.3
Thhalv10006164m.g Eutrema salsugineum HOM05D005802 ORTHO05D006992 4.3e-86 322.0 273 64.1
ECA234G0875 Erigeron canadensis HOM05D005802 ORTHO05D006992 5.6e-86 321.6 263 64.6
Cfa011175 Carpinus fangiana HOM05D005802 ORTHO05D006992 9.6e-86 320.9 260 65.0
Sp5g02580 Schrenkiella parvula HOM05D005802 ORTHO05D006992 9.6e-86 320.9 273 63.0
Medtr4g026180 Medicago truncatula HOM05D005802 ORTHO05D006992 2.1e-85 319.7 267 63.3
Sabra14G0043900 Salix brachista HOM05D005802 ORTHO05D006992 2.1e-85 319.7 279 64.9
RcHm_v2.0_Chr5g0028911 Rosa chinensis HOM05D005802 ORTHO05D006992 4.7e-85 318.5 275 61.8
TWI23G1076 Tripterygium wilfordii HOM05D005802 ORTHO05D006992 4.7e-85 318.5 268 64.9
ClCG09G008930 Citrullus lanatus HOM05D005802 ORTHO05D006992 6.2e-85 318.2 269 63.9
Glyma.01G137000 Glycine max HOM05D005802 ORTHO05D006992 6.2e-85 318.2 271 63.8
AUR62004168 Chenopodium quinoa HOM05D005802 ORTHO05D006992 8.1e-85 317.8 271 64.2
FAN06G3617 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.1e-84 317.4 276 61.6
PSO478G1061 Papaver somniferum HOM05D005802 ORTHO05D006992 1.1e-84 317.4 272 63.2
Hund27376 Selenicereus undatus HOM05D005802 ORTHO05D006992 1.1e-84 317.4 267 64.0
PSO017G7043 Papaver somniferum HOM05D005802 ORTHO05D006992 1.8e-84 316.6 272 63.2
FAN10G1300 Fragaria x ananassa HOM05D005802 ORTHO05D006992 2.4e-84 316.2 276 61.6
Psat7g217800 Pisum sativum HOM05D005802 ORTHO05D006992 2.4e-84 316.2 268 64.2
FAN06G1875 Fragaria x ananassa HOM05D005802 ORTHO05D006992 3.1e-84 315.8 286 59.8
SGA_v2.0_scaffold153G36973 Striga asiatica HOM05D005802 ORTHO05D006992 3.1e-84 315.8 265 61.9
FAN03G1851 Fragaria x ananassa HOM05D005802 ORTHO05D006992 5.2e-84 315.1 276 61.2
TPR.G5024 Trifolium pratense HOM05D005802 ORTHO05D006992 5.2e-84 315.1 271 64.2
Sed0027573 Sechium edule HOM05D005802 ORTHO05D006992 1.5e-83 313.5 268 62.7
CsaV3_7G026130 Cucumis sativus L. HOM05D005802 ORTHO05D006992 7.6e-83 311.2 269 63.9
FAN10G3200 Fragaria x ananassa HOM05D005802 ORTHO05D006992 7.6e-83 311.2 276 60.9
Aqoxy7G00743 Aquilegia oxysepala HOM05D005802 ORTHO05D006992 1.6e-80 303.5 274 61.3
Carub.0005s2750 Capsella rubella HOM05D005802 ORTHO05D006992 2.7e-80 302.8 261 64.8
Carub.0005s2739 Capsella rubella HOM05D005802 ORTHO05D006992 3.5e-80 302.4 264 64.0
FAN01G2984 Fragaria x ananassa HOM05D005802 ORTHO05D006992 3.0e-79 299.3 285 59.3
vmacro21028 Vaccinium macrocarpon HOM05D005802 ORTHO05D006992 3.9e-79 298.9 267 61.8
BraA09t40717Z Brassica rapa HOM05D005802 ORTHO05D006992 6.6e-79 298.1 338 52.4
Actinidia28320 Actinidia chinensis HOM05D005802 ORTHO05D006992 9.0e-76 287.7 219 69.4
VMungo0331G0187 Vigna mungo HOM05D005802 ORTHO05D006992 1.2e-75 287.3 246 64.6
FvH4_7g11150 Fragaria vesca HOM05D005802 ORTHO05D006992 2.6e-75 286.2 245 61.6
ATR1153G072 Amborella trichopoda HOM05D005802 ORTHO05D006992 9.3e-73 277.7 269 57.2
Os07g0484500 Oryza sativa ssp. japonica HOM05D005802 ORTHO05D006992 7.6e-67 258.1 275 50.5
Zm00001eb321530 Zea mays HOM05D005802 ORTHO05D006992 1.6e-64 250.4 257 51.8
Ca_02431_v3 Cicer arietinum L. HOM05D005802 ORTHO05D006992 6.0e-64 248.4 254 55.9
EL10Ac1g00841 Beta vulgaris HOM05D005802 ORTHO05D006992 6.7e-63 245.0 267 52.4
Oeu051925.1 Olea europaea HOM05D005802 ORTHO05D006992 1.5e-62 243.8 243 59.3
Lj7A534G38 Lonicera japonica HOM05D000908 ORTHO05D000789 4.3e-62 242.3 242 56.6
CDE04G3422 Ceratophyllum demersum HOM05D005802 ORTHO05D006992 2.8e-61 239.6 295 48.5
TAR375G0251 Trochodendron aralioides HOM05D005802 ORTHO05D006992 2.0e-59 233.4 189 65.6
Lalb_Chr12g0208021 Lupinus albus HOM05D005802 ORTHO05D006992 5.5e-57 225.3 181 64.6
Oeu051926.1 Olea europaea HOM05D005802 ORTHO05D006992 3.5e-56 222.6 149 71.1
Mapoly0010s0189 Marchantia polymorpha HOM05D005802 ORTHO05D006992 6.7e-55 218.4 259 47.5
RcHm_v2.0_Chr1g0349231 Rosa chinensis HOM05D005802 ORTHO05D006992 1.2e-51 207.6 194 57.7
AagrBONN_evm.TU.Sc2ySwM_368.1567 Anthoceros agrestis HOM05D005802 ORTHO05D006992 1.0e-50 204.5 271 42.8
Pp3c6_12030 Physcomitrium patens HOM05D005802 ORTHO05D006992 8.4e-50 201.4 263 45.2
MELO3C021033.2 Cucumis melo HOM05D005802 ORTHO05D006992 5.7e-46 188.7 205 53.7
SMO347G0664 Selaginella moellendorffii HOM05D005802 ORTHO05D006992 3.1e-44 183.0 229 43.2
Actinidia33479 Actinidia chinensis HOM05D005802 ORTHO05D006992 3.7e-37 159.5 132 62.9
Oeu055514.1 Olea europaea HOM05D005802 ORTHO05D006992 3.1e-36 156.4 145 62.1
RcHm_v2.0_Chr1g0349201 Rosa chinensis HOM05D005802 ORTHO05D006992 6.9e-36 155.2 343 34.7
FAN03G0906 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.5e-35 154.1 115 71.3
FAN03G0348 Fragaria x ananassa HOM05D005802 ORTHO05D006992 3.4e-35 152.9 115 70.4
Ah.05g173880 Amaranthus hybridus HOM05D005802 ORTHO05D006992 1.7e-34 150.6 108 71.3
Ah.05g173870 Amaranthus hybridus HOM05D005802 ORTHO05D006992 5.1e-31 139.0 133 58.6
RcHm_v2.0_Chr1g0349251 Rosa chinensis HOM05D005802 ORTHO05D006992 1.3e-26 124.4 87 72.4
RcHm_v2.0_Chr1g0349241 Rosa chinensis HOM05D005802 ORTHO05D006992 2.2e-26 123.6 110 60.9
Glyma.03G031466 Glycine max HOM05D005802 ORTHO05D006992 6.5e-26 122.1 84 70.2
SHI22577 Sapria himalayana HOM05D005802 ORTHO05D006992 6.5e-26 122.1 142 48.6
Cc00_g05160 Coffea canephora HOM05D005802 ORTHO05D006992 1.1e-25 121.3 109 61.5
Cc00_g05150 Coffea canephora HOM05D005802 ORTHO05D006992 2.7e-24 116.7 111 58.6
Hma1.2p1_0072F.1_g038280 Hydrangea macrophylla HOM05D005802 ORTHO05D006992 1.4e-23 114.4 104 61.5
Oeu045806.1 Olea europaea HOM05D005802 ORTHO05D006992 3.0e-23 113.2 74 81.1
CBR_g48776 Chara braunii HOM05D005802 ORTHO05D006992 2.6e-22 110.2 246 28.9
Cre16.g672500 Chlamydomonas reinhardtii HOM05D005802 ORTHO05D006992 1.3e-21 107.8 267 32.6
SHI22578 Sapria himalayana HOM05D005802 ORTHO05D006992 1.7e-21 107.5 87 63.2
FAN10G4230 Fragaria x ananassa HOM05D005802 ORTHO05D006992 4.8e-21 105.9 60 83.3
RcHm_v2.0_Chr1g0349161 Rosa chinensis HOM05D005802 ORTHO05D006992 3.1e-20 103.2 125 48.0
Lalb_Chr12g0208011 Lupinus albus HOM05D005802 ORTHO05D006992 1.6e-19 100.9 74 71.6
Dinv44127 Davidia involucrata HOM05D005802 ORTHO05D006992 1.3e-18 97.8 62 75.8
RcHm_v2.0_Chr1g0349171 Rosa chinensis HOM05D005802 ORTHO05D006992 2.9e-18 96.7 56 87.5
C04p32020 Brassica napus HOM05D010895 ORTHO05D012939 3.8e-18 96.3 116 47.4
CARHR170760 Cardamine hirsuta HOM05D005802 ORTHO05D006992 2.7e-16 90.1 73 65.8
BolC4t24754H Brassica oleracea HOM05D005802 ORTHO05D006992 2.3e-15 87.0 103 49.5
ECA240G2706 Erigeron canadensis HOM05D001255 ORTHO05D001246 5.7e-14 82.4 65 63.1
SGA_v2.0_scaffold123G33454 Striga asiatica HOM05D000451 ORTHO05D000351 2.9e-10 70.1 98 43.9
Glyma.03G031532 Glycine max HOM05D005802 ORTHO05D006992 1.6e-08 64.3 82 46.3


User provided reference genes

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