Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G106.18 Capsicum annuum HOM05D003718 ORTHO05D004402 0.0e+00 1314.3 691 100.0
Sopen05g027610 Solanum pennellii HOM05D003718 ORTHO05D004402 0.0e+00 1155.2 692 88.6
Solyc05g046330.4 Solanum lycopersicum HOM05D003718 ORTHO05D004402 0.0e+00 1151.0 692 88.3
Sopen07g005600 Solanum pennellii HOM05D003718 ORTHO05D004402 4.0e-301 1037.7 692 78.8
Peaxi162Scf00320g00717 Petunia axillaris HOM05D003718 ORTHO05D004402 1.2e-300 1036.2 692 79.5
CAN.G54.7 Capsicum annuum HOM05D003718 ORTHO05D004402 5.4e-290 1000.7 692 76.0
Dinv34637 Davidia involucrata HOM05D003718 ORTHO05D004402 1.0e-285 986.5 693 73.9
Nitab4.5_0001572g0020 Nicotiana tabacum HOM05D003718 ORTHO05D004402 4.0e-285 984.6 692 76.2
Solyc07g014700.4 Solanum lycopersicum HOM05D003718 ORTHO05D004402 4.9e-283 977.6 643 79.3
Nitab4.5_0000413g0180 Nicotiana tabacum HOM05D003718 ORTHO05D004402 1.8e-282 975.7 692 76.2
CSS0049010 Camellia sinensis var. sinensis HOM05D003718 ORTHO05D004402 2.7e-281 971.8 693 74.0
Actinidia07305 Actinidia chinensis HOM05D003718 ORTHO05D004402 9.5e-279 963.4 687 73.4
CSS0040480 Camellia sinensis var. sinensis HOM05D003718 ORTHO05D004402 5.2e-277 957.6 693 73.0
Cc01_g18200 Coffea canephora HOM05D003718 ORTHO05D004402 1.3e-275 953.0 694 71.2
Hma1.2p1_0273F.1_g109540 Hydrangea macrophylla HOM05D003718 ORTHO05D004402 4.1e-274 948.0 694 73.3
Peaxi162Scf00906g00225 Petunia axillaris HOM05D003718 ORTHO05D004402 9.2e-274 946.8 672 76.5
Migut.D00439 Erythranthe guttata HOM05D003718 ORTHO05D004402 1.1e-271 939.9 691 70.3
QL09p039591 Quercus lobata HOM05D003718 ORTHO05D004402 6.2e-270 934.1 708 69.6
Cfa013046 Carpinus fangiana HOM05D003718 ORTHO05D004402 1.5e-268 929.5 689 71.1
CANSAT01G0671 Cannabis sativa HOM05D003718 ORTHO05D004402 8.6e-264 913.7 692 69.9
MSTRG.21485 Avicennia marina HOM05D003718 ORTHO05D004402 1.9e-263 912.5 688 68.6
CiPaw.04G187700 Carya illinoinensis HOM05D003718 ORTHO05D004402 4.3e-263 911.4 693 69.0
Duzib211G0290 Durio zibethinus HOM05D003718 ORTHO05D004402 9.5e-263 910.2 691 68.2
CiPaw.03G266000 Carya illinoinensis HOM05D003718 ORTHO05D004402 1.2e-262 909.8 691 69.3
Gohir.D07G156100 Gossypium hirsutum HOM05D003718 ORTHO05D004402 2.8e-262 908.7 692 68.4
Thecc.01G255900 Theobroma cacao HOM05D003718 ORTHO05D004402 1.1e-261 906.7 689 68.8
Gorai.001G179000 Gossypium raimondii HOM05D003718 ORTHO05D004402 6.8e-261 904.0 692 68.1
Duzib133G1085 Durio zibethinus HOM05D003718 ORTHO05D004402 8.9e-261 903.7 689 69.5
TAR633G0796 Trochodendron aralioides HOM05D003718 ORTHO05D004402 7.6e-260 900.6 694 67.9
Atru.chr5.1725 Acer truncatum HOM05D003718 ORTHO05D004402 1.7e-259 899.4 689 67.5
DCAR_000921 Daucus carota HOM05D003718 ORTHO05D004402 3.8e-259 898.3 692 67.5
Gohir.A07G149800 Gossypium hirsutum HOM05D003718 ORTHO05D004402 1.1e-258 896.7 692 67.6
MD05G1194900 Malus domestica HOM05D003718 ORTHO05D004402 2.4e-258 895.6 692 68.1
ECA236G3831 Erigeron canadensis HOM05D003718 ORTHO05D004402 5.4e-258 894.4 689 68.4
GSVIVG01028357001 Vitis vinifera HOM05D003718 ORTHO05D004402 7.1e-258 894.0 688 68.6
Manes.12G033700 Manihot esculenta HOM05D003718 ORTHO05D004402 9.2e-258 893.6 694 67.3
TWI75G1389 Tripterygium wilfordii HOM05D003718 ORTHO05D004402 1.2e-257 893.3 689 67.9
vmacro14814 Vaccinium macrocarpon HOM05D003718 ORTHO05D004402 6.0e-257 891.0 646 72.4
Potri.002G036600 Populus trichocarpa HOM05D003718 ORTHO05D004402 7.8e-257 890.6 690 67.8
TWI12G1081 Tripterygium wilfordii HOM05D003718 ORTHO05D004402 7.8e-257 890.6 688 67.6
Oeu052043.2 Olea europaea HOM05D003718 ORTHO05D004402 1.0e-256 890.2 796 61.8
SalBow4G0483 Salvia bowleyana HOM05D003718 ORTHO05D004402 1.0e-256 890.2 711 66.1
Duzib138G1036 Durio zibethinus HOM05D003718 ORTHO05D004402 1.2e-254 883.2 689 67.3
Sabra05G0174600 Salix brachista HOM05D003718 ORTHO05D004402 1.6e-254 882.9 714 66.2
Prupe.8G221600 Prunus persica HOM05D003718 ORTHO05D004402 2.8e-254 882.1 688 67.7
Ciclev10019124m.g Citrus clementina HOM05D003718 ORTHO05D004402 4.7e-254 881.3 689 66.9
MD10G1181500 Malus domestica HOM05D003718 ORTHO05D004402 4.7e-254 881.3 694 67.0
Glyma.03G164400 Glycine max HOM05D003718 ORTHO05D004402 6.2e-254 880.9 692 67.2
Gohir.D11G137575 Gossypium hirsutum HOM05D003718 ORTHO05D004402 8.1e-254 880.6 691 67.1
Gorai.007G147600 Gossypium raimondii HOM05D003718 ORTHO05D004402 1.1e-253 880.2 691 66.9
CsaV3_1G015830 Cucumis sativus L. HOM05D003718 ORTHO05D004402 1.4e-253 879.8 688 67.7
Gohir.A11G131600 Gossypium hirsutum HOM05D003718 ORTHO05D004402 1.4e-253 879.8 691 67.4
Manes.13G035300 Manihot esculenta HOM05D003718 ORTHO05D004402 1.4e-253 879.8 686 67.2
Potri.005G226100 Populus trichocarpa HOM05D003718 ORTHO05D004402 1.8e-253 879.4 692 66.9
MELO3C025537.2 Cucumis melo HOM05D003718 ORTHO05D004402 5.2e-253 877.9 688 67.7
Nitab4.5_0005411g0050 Nicotiana tabacum HOM05D003718 ORTHO05D004402 2.6e-252 875.5 666 73.4
HanXRQChr04g0110491 Helianthus annuus HOM05D003718 ORTHO05D004402 9.9e-252 873.6 643 69.8
RcHm_v2.0_Chr6g0287811 Rosa chinensis HOM05D003718 ORTHO05D004402 1.3e-251 873.2 691 67.6
TAR362G0778 Trochodendron aralioides HOM05D003718 ORTHO05D004402 1.7e-251 872.8 696 66.8
FvH4_2g21250 Fragaria vesca HOM05D003718 ORTHO05D004402 4.9e-251 871.3 691 67.1
Nn1g02814 Nelumbo nucifera HOM05D003718 ORTHO05D004402 2.4e-250 869.0 695 65.8
Phvul.001G162000 Phaseolus vulgaris HOM05D003718 ORTHO05D004402 3.5e-249 865.1 693 66.1
Sed0001928 Sechium edule HOM05D003718 ORTHO05D004402 6.0e-249 864.4 693 65.5
Sabra02G0029600 Salix brachista HOM05D003718 ORTHO05D004402 1.7e-248 862.8 722 64.0
Glyma.19G165800 Glycine max HOM05D003718 ORTHO05D004402 5.1e-248 861.3 693 66.4
Eucgr.K03255 Eucalyptus grandis HOM05D003718 ORTHO05D004402 6.6e-248 860.9 687 66.8
SGA_v2.0_scaffold138G35211 Striga asiatica HOM05D003718 ORTHO05D004402 6.6e-248 860.9 798 59.9
FAN15G3248 Fragaria x ananassa HOM05D003718 ORTHO05D004402 1.5e-247 859.8 712 64.7
VMungo1383G2169 Vigna mungo HOM05D003718 ORTHO05D004402 1.5e-247 859.8 693 65.8
Lsat_1_v5_gn_8_92540 Lactuca sativa HOM05D003718 ORTHO05D004402 4.3e-247 858.2 675 66.5
Lalb_Chr21g0313961 Lupinus albus HOM05D003718 ORTHO05D004402 6.2e-246 854.4 690 66.2
SGA_v2.0_scaffold1G00624 Striga asiatica HOM05D003718 ORTHO05D004402 6.2e-246 854.4 693 66.2
FAN24G2691 Fragaria x ananassa HOM05D003718 ORTHO05D004402 1.1e-245 853.6 712 64.7
Aqoxy1G01842 Aquilegia oxysepala HOM05D003718 ORTHO05D004402 1.5e-244 849.7 688 64.4
arahy.Tifrunner.gnm1.ann1.FU7SP6 Arachis hypogaea HOM05D003718 ORTHO05D004402 7.6e-244 847.4 704 64.1
Lj5g0026512 Lotus japonicus HOM05D003718 ORTHO05D004402 1.3e-243 846.7 692 66.3
Lalb_Chr02g0152551 Lupinus albus HOM05D003718 ORTHO05D004402 1.3e-243 846.7 690 65.9
arahy.Tifrunner.gnm1.ann1.QXN52H Arachis hypogaea HOM05D003718 ORTHO05D004402 6.4e-243 844.3 707 64.1
FAN27G0576 Fragaria x ananassa HOM05D003718 ORTHO05D004402 1.4e-242 843.2 745 62.1
Ca_09672_v3 Cicer arietinum L. HOM05D003718 ORTHO05D004402 3.2e-242 842.0 689 65.5
AUR62013766 Chenopodium quinoa HOM05D003718 ORTHO05D004402 3.5e-241 838.6 687 64.0
Psat6g054080 Pisum sativum HOM05D003718 ORTHO05D004402 5.6e-239 831.2 687 64.5
Phvul.007G191800 Phaseolus vulgaris HOM05D003718 ORTHO05D004402 1.6e-238 829.7 691 64.4
Medtr1g069780 Medicago truncatula HOM05D003718 ORTHO05D004402 2.1e-238 829.3 687 64.6
Rhsim01G0262400 Rhododendron simsii HOM05D003718 ORTHO05D004402 9.0e-237 823.9 641 68.3
Nn3g19693 Nelumbo nucifera HOM05D003718 ORTHO05D004402 3.4e-236 822.0 695 63.2
THA.LOC104806254 Tarenaya hassleriana HOM05D003718 ORTHO05D004402 5.8e-236 821.2 687 62.4
Glyma.10G038000 Glycine max HOM05D003718 ORTHO05D004402 8.4e-235 817.4 663 65.3
CARHR227730 Cardamine hirsuta HOM05D003718 ORTHO05D004402 3.5e-233 812.0 687 62.3
PGR031G0689 Punica granatum HOM05D003718 ORTHO05D004402 1.0e-232 810.4 676 64.2
TPR.G5874 Trifolium pratense HOM05D003718 ORTHO05D004402 3.9e-232 808.5 646 65.6
Thhalv10024580m.g Eutrema salsugineum HOM05D003718 ORTHO05D004402 4.3e-231 805.1 685 61.6
THA.LOC104812416 Tarenaya hassleriana HOM05D003718 ORTHO05D004402 1.6e-230 803.1 691 61.5
PSO210G5136 Papaver somniferum HOM05D003718 ORTHO05D004402 2.1e-230 802.7 694 62.0
VMungo0720G0687 Vigna mungo HOM05D003718 ORTHO05D004402 2.1e-230 802.7 687 62.2
AL7G32970 Arabidopsis lyrata HOM05D003718 ORTHO05D004402 9.0e-229 797.3 687 60.8
PSO832G2930 Papaver somniferum HOM05D003718 ORTHO05D004402 1.5e-228 796.6 694 61.7
Carub.0007s2028 Capsella rubella HOM05D003718 ORTHO05D004402 2.0e-228 796.2 689 60.8
AT4G21150 Arabidopsis thaliana HOM05D003718 ORTHO05D004402 4.5e-228 795.0 687 60.8
Sp7g19230 Schrenkiella parvula HOM05D003718 ORTHO05D004402 2.9e-227 792.3 683 61.2
Lj1C68G8 Lonicera japonica HOM05D003718 ORTHO05D004402 6.5e-227 791.2 643 65.8
arahy.Tifrunner.gnm1.ann1.EWE7BX Arachis hypogaea HOM05D003718 ORTHO05D004402 1.9e-226 789.6 728 58.7
ClCG03G002590 Citrullus lanatus HOM05D003718 ORTHO05D004402 1.2e-225 786.9 688 61.8
arahy.Tifrunner.gnm1.ann1.B1YDGW Arachis hypogaea HOM05D003718 ORTHO05D004402 4.6e-225 785.0 708 59.7
Rhsim13G0036100 Rhododendron simsii HOM05D003718 ORTHO05D004402 1.3e-224 783.5 614 67.4
Hund17111 Selenicereus undatus HOM05D003718 ORTHO05D004402 1.3e-224 783.5 645 62.9
BcaC09g51252 Brassica carinata HOM05D003718 ORTHO05D004402 2.3e-224 782.7 685 60.0
BolC1t01458H Brassica oleracea HOM05D003718 ORTHO05D004402 3.0e-224 782.3 685 60.0
Lsat_1_v5_gn_5_182920 Lactuca sativa HOM05D003718 ORTHO05D004402 6.7e-224 781.2 694 61.7
EL10Ac1g00739 Beta vulgaris HOM05D003718 ORTHO05D004402 4.1e-221 771.9 716 58.7
ATR0736G006 Amborella trichopoda HOM05D003718 ORTHO05D004402 4.5e-220 768.5 644 63.5
Psat3g056400 Pisum sativum HOM05D003718 ORTHO05D004402 1.7e-219 766.5 668 62.3
CDE07G1087 Ceratophyllum demersum HOM05D003718 ORTHO05D004402 2.2e-219 766.1 694 58.9
BcaNung03839 Brassica carinata HOM05D003718 ORTHO05D004402 9.3e-218 760.8 685 58.8
BraA03t14340Z Brassica rapa HOM05D003718 ORTHO05D004402 7.9e-217 757.7 704 58.8
TPR.G9204 Trifolium pratense HOM05D003718 ORTHO05D004402 7.9e-217 757.7 712 59.1
Os01g0911200 Oryza sativa ssp. japonica HOM05D003718 ORTHO05D004402 6.7e-216 754.6 688 58.7
unitig_22.g5287 Utricularia gibba HOM05D003718 ORTHO05D004402 1.1e-215 753.8 708 59.0
Zm00001eb143710 Zea mays HOM05D003718 ORTHO05D004402 1.5e-215 753.4 685 57.7
COL.COLO4_04023 Corchorus olitorius HOM05D003718 ORTHO05D004402 2.2e-214 749.6 621 64.3
CDE04G2599 Ceratophyllum demersum HOM05D003718 ORTHO05D004402 6.3e-214 748.0 693 57.9
Zm00001eb365020 Zea mays HOM05D003718 ORTHO05D004402 9.1e-213 744.2 684 57.9
BraA01t01195Z Brassica rapa HOM05D003718 ORTHO05D004402 5.9e-212 741.5 649 59.6
Sc02g0003190 Simmondsia chinensis HOM05D003718 ORTHO05D004402 2.5e-210 736.1 621 62.6
A01p12510 Brassica napus HOM05D003718 ORTHO05D004402 3.2e-210 735.7 686 57.0
AUR62023389 Chenopodium quinoa HOM05D003718 ORTHO05D004402 4.7e-209 731.9 687 58.2
C01p15100 Brassica napus HOM05D003718 ORTHO05D004402 1.4e-208 730.3 681 56.8
Ca_08683_v3 Cicer arietinum L. HOM05D003718 ORTHO05D004402 2.2e-206 723.0 689 59.4
Aa31LG6G3160 Aethionema arabicum HOM05D003718 ORTHO05D004402 2.8e-206 722.6 655 58.9
A03p52670 Brassica napus HOM05D003718 ORTHO05D004402 5.9e-204 714.9 657 58.4
C07p51100 Brassica napus HOM05D003718 ORTHO05D004402 1.3e-203 713.8 663 57.3
BolC7t45610H Brassica oleracea HOM05D003718 ORTHO05D004402 1.3e-203 713.8 663 57.3
HPP92_000351 Vanilla planifolia HOM05D003718 ORTHO05D004402 5.0e-203 711.8 691 55.7
unitig_8.g3735 Utricularia gibba HOM05D003718 ORTHO05D004402 1.4e-200 703.7 651 58.4
Nitab4.5_0005095g0020 Nicotiana tabacum HOM05D003718 ORTHO05D004402 3.1e-197 692.6 502 73.9
BolC3t20629H Brassica oleracea HOM05D003718 ORTHO05D004402 1.5e-191 673.7 727 52.1
C03p83480 Brassica napus HOM05D003718 ORTHO05D004402 1.7e-182 643.7 736 50.1
Cpa.g.sc20.44 Carica papaya HOM05D003718 ORTHO05D004402 1.0e-171 607.8 696 51.0
Ah.05g177770 Amaranthus hybridus HOM05D003718 ORTHO05D004402 4.0e-168 595.9 538 57.6
BcaC01g00710 Brassica carinata HOM05D003718 ORTHO05D004402 1.6e-164 583.9 550 57.8
Mapoly0028s0115 Marchantia polymorpha HOM05D003718 ORTHO05D004402 1.2e-145 521.2 697 45.2
Actinidia37517 Actinidia chinensis HOM05D003718 ORTHO05D004402 8.1e-145 518.5 563 53.3
CsaV3_UNG055470 Cucumis sativus L. HOM05D003718 ORTHO05D004402 3.5e-132 476.5 432 60.9
AUR62043414 Chenopodium quinoa HOM05D003718 ORTHO05D004402 4.0e-120 436.4 356 66.0
vmacro02673 Vaccinium macrocarpon HOM05D003718 ORTHO05D004402 3.2e-109 400.2 321 67.0
SEGI_27157 Sequoiadendron giganteum HOM05D003718 ORTHO05D004402 3.5e-108 396.7 361 57.6
HanXRQChr11g0336771 Helianthus annuus HOM05D003718 ORTHO05D004402 1.3e-102 378.3 379 57.8
Psat0ss9065g0080 Pisum sativum HOM05D003718 ORTHO05D004402 7.2e-101 372.5 428 49.5
EL10Ac1g02094 Beta vulgaris HOM05D003718 ORTHO05D004402 1.4e-93 348.2 307 59.9
FAN20G1425 Fragaria x ananassa HOM05D003718 ORTHO05D004402 1.0e-91 342.0 327 57.2
A08p15230 Brassica napus HOM05D003718 ORTHO05D001664 5.1e-91 339.7 520 41.7
Haze_21407 Corylus avellana HOM05D003718 ORTHO05D004402 1.4e-88 331.6 304 58.6
AagrBONN_evm.TU.Sc2ySwM_340.234 Anthoceros agrestis HOM05D003718 ORTHO05D004402 5.3e-80 303.1 420 44.8
CBR_g32152 Chara braunii HOM05D003718 ORTHO05D004402 9.8e-66 255.8 634 33.1
Hma1.2p1_0576F.1_g181950 Hydrangea macrophylla HOM05D003718 ORTHO05D004402 9.8e-66 255.8 309 50.5
Pp3c7_6480 Physcomitrium patens HOM05D003718 ORTHO05D004402 1.1e-61 242.3 384 42.4
Actinidia09536 Actinidia chinensis HOM05D003718 ORTHO05D004402 1.6e-55 221.9 262 50.8
Actinidia09538 Actinidia chinensis HOM05D003718 ORTHO05D004402 1.3e-54 218.8 156 76.9
Psat7g093680 Pisum sativum HOM05D003718 ORTHO05D004402 8.6e-54 216.1 299 44.5
HPP92_000418 Vanilla planifolia HOM05D003718 ORTHO05D004402 3.2e-48 197.6 652 28.2
FAN27G1677 Fragaria x ananassa HOM05D003718 ORTHO05D004402 3.6e-44 184.1 187 54.0
SEGI_31370 Sequoiadendron giganteum HOM05D003718 ORTHO05D004402 8.0e-44 183.0 223 49.3
SHI09762 Sapria himalayana HOM05D003718 ORTHO05D004402 1.2e-36 159.1 192 48.4
arahy.Tifrunner.gnm1.ann1.S1G2KX Arachis hypogaea HOM05D003718 ORTHO05D004402 3.6e-36 157.5 118 64.4
Actinidia09537 Actinidia chinensis HOM05D003718 ORTHO05D004402 4.0e-35 154.1 162 53.1
CsaV3_UNG055460 Cucumis sativus L. HOM05D003718 ORTHO05D004402 4.0e-35 154.1 194 50.0
SMO367G0218 Selaginella moellendorffii HOM05D003718 ORTHO05D004402 1.3e-33 149.1 135 60.0
Actinidia25800 Actinidia chinensis HOM05D003718 ORTHO05D004402 8.6e-30 136.3 194 42.8
Psat6g086960 Pisum sativum HOM05D003718 ORTHO05D004402 3.6e-28 131.0 96 67.7
Actinidia30158 Actinidia chinensis HOM05D003718 ORTHO05D004402 1.1e-27 129.4 88 69.3
arahy.Tifrunner.gnm1.ann1.6B4W14 Arachis hypogaea HOM05D003718 ORTHO05D004402 9.9e-26 122.9 79 77.2
arahy.Tifrunner.gnm1.ann1.EX0EXI Arachis hypogaea HOM05D004703 ORTHO05D005801 2.9e-25 121.3 80 75.0
arahy.Tifrunner.gnm1.ann1.N0B60F Arachis hypogaea HOM05D003718 ORTHO05D004402 6.4e-25 120.2 80 75.0
Lsat_1_v5_gn_4_881 Lactuca sativa HOM05D003718 ORTHO05D004402 2.4e-19 101.7 163 37.4
Lsat_1_v5_gn_3_107020 Lactuca sativa HOM05D003718 ORTHO05D004402 7.6e-18 96.7 105 50.5
Psat6g087000 Pisum sativum HOM05D003718 ORTHO05D004402 4.9e-17 94.0 67 71.6
Actinidia30157 Actinidia chinensis HOM05D003718 ORTHO05D057597 5.4e-16 90.5 86 57.0
Cre08.g368450 Chlamydomonas reinhardtii HOM05D003718 ORTHO05D004402 5.4e-16 90.5 299 31.4
arahy.Tifrunner.gnm1.ann1.LM6F6Z Arachis hypogaea HOM05D003718 ORTHO05D004402 1.3e-14 85.9 115 39.1
Lsat_1_v5_gn_9_27880 Lactuca sativa HOM05D003718 ORTHO05D004402 8.1e-12 76.6 177 32.2
Actinidia25801 Actinidia chinensis HOM05D003718 ORTHO05D004402 5.3e-11 73.9 118 40.7
Gohir.A01G185580 Gossypium hirsutum HOM05D003718 ORTHO05D000087 9.9e-10 69.7 49 67.3


User provided reference genes

Program Settings