Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1058.38 Capsicum annuum HOM05D006762 ORTHO05D003505 3.2e-45 184.9 105 100.0
PGSC0003DMG400004817 Solanum tuberosum HOM05D006762 ORTHO05D003505 4.8e-41 171.0 105 93.3
Solyc08g078560.3 Solanum lycopersicum HOM05D006762 ORTHO05D003505 9.7e-34 146.7 105 81.0
Sopen08g027040 Solanum pennellii HOM05D006762 ORTHO05D003505 1.1e-32 143.3 94 89.4
QL12p012005 Quercus lobata HOM05D006762 ORTHO05D003505 4.8e-25 117.9 104 65.4
Actinidia27471 Actinidia chinensis HOM05D006762 ORTHO05D003505 4.1e-24 114.8 111 65.8
SalBow6G0204 Salvia bowleyana HOM05D006762 ORTHO05D003505 7.0e-24 114.0 108 63.9
Migut.A01106 Erythranthe guttata HOM05D006762 ORTHO05D003505 4.5e-23 111.3 107 63.6
SalBow6G1716 Salvia bowleyana HOM05D006762 ORTHO05D003505 1.7e-22 109.4 108 63.0
Ciclev10023003m.g Citrus clementina HOM05D006762 ORTHO05D003505 2.9e-22 108.6 105 61.0
Cpa.g.sc29.168 Carica papaya HOM05D006762 ORTHO05D003505 8.5e-22 107.1 107 62.6
Oeu020431.1 Olea europaea HOM05D006762 ORTHO05D003505 4.2e-21 104.8 105 66.7
vmacro21548 Vaccinium macrocarpon HOM05D006762 ORTHO05D003505 5.5e-21 104.4 111 60.4
GSVIVG01006992001 Vitis vinifera HOM05D006762 ORTHO05D003505 7.2e-21 104.0 109 58.7
Manes.01G081200 Manihot esculenta HOM05D006762 ORTHO05D003505 1.6e-20 102.8 106 62.3
BcaC06g31382 Brassica carinata HOM05D006762 ORTHO05D003505 2.7e-20 102.1 111 59.5
Aa31csc22G110 Aethionema arabicum HOM05D006762 ORTHO05D003505 3.6e-20 101.7 111 54.1
BcaC06g31384 Brassica carinata HOM05D006762 ORTHO05D003505 3.6e-20 101.7 111 60.4
Medtr4g100820 Medicago truncatula HOM05D006762 ORTHO05D003505 3.6e-20 101.7 105 63.8
Sp2g12170 Schrenkiella parvula HOM05D006762 ORTHO05D003505 3.6e-20 101.7 109 62.4
GSVIVG01004713001 Vitis vinifera HOM05D006762 ORTHO05D003505 4.7e-20 101.3 109 57.8
C02p48680 Brassica napus HOM05D006762 ORTHO05D003505 1.4e-19 99.8 111 59.5
BolC2t10960H Brassica oleracea HOM05D006762 ORTHO05D003505 1.4e-19 99.8 111 59.5
A02p31340 Brassica napus HOM05D006762 ORTHO05D003505 1.8e-19 99.4 107 58.9
BraA02t08136Z Brassica rapa HOM05D006762 ORTHO05D003505 1.8e-19 99.4 107 58.9
AL7G37400 Arabidopsis lyrata HOM05D006762 ORTHO05D003505 2.3e-19 99.0 105 56.2
Lsat_1_v5_gn_6_90840 Lactuca sativa HOM05D006762 ORTHO05D003505 2.3e-19 99.0 94 62.8
TAR629G0824 Trochodendron aralioides HOM05D006762 ORTHO05D003505 2.3e-19 99.0 110 59.1
COL.COLO4_37166 Corchorus olitorius HOM05D006762 ORTHO05D003505 3.0e-19 98.6 109 59.6
CiPaw.11G079800 Carya illinoinensis HOM05D006762 ORTHO05D003505 4.0e-19 98.2 109 55.0
Hund14549 Selenicereus undatus HOM05D006762 ORTHO05D003505 4.0e-19 98.2 94 64.9
Aqoxy7G00783 Aquilegia oxysepala HOM05D006762 ORTHO05D003505 6.8e-19 97.4 111 51.4
Sabra16G0215100 Salix brachista HOM05D006762 ORTHO05D003505 8.8e-19 97.1 107 56.1
unitig_21.g20319 Utricularia gibba HOM05D006762 ORTHO05D003505 1.2e-18 96.7 108 56.5
Gohir.A08G169800 Gossypium hirsutum HOM05D006762 ORTHO05D003505 1.5e-18 96.3 108 62.0
Gohir.D08G188100 Gossypium hirsutum HOM05D006762 ORTHO05D003505 1.5e-18 96.3 108 62.0
MSTRG.12104 Avicennia marina HOM05D006762 ORTHO05D003505 2.6e-18 95.5 98 65.3
Psat4g072480 Pisum sativum HOM05D006762 ORTHO05D003505 2.6e-18 95.5 105 60.0
BcaC06g34251 Brassica carinata HOM05D006762 ORTHO05D003505 3.4e-18 95.1 107 58.9
C07p31100 Brassica napus HOM05D006762 ORTHO05D003505 3.4e-18 95.1 107 58.9
Lj8A263T41 Lonicera japonica HOM05D006762 ORTHO05D003505 3.4e-18 95.1 104 61.5
Lj4g0004620 Lotus japonicus HOM05D006762 ORTHO05D003505 4.4e-18 94.7 106 61.3
TWI81G0572 Tripterygium wilfordii HOM05D006762 ORTHO05D003505 5.7e-18 94.4 99 61.6
ClCG10G002600 Citrullus lanatus HOM05D006762 ORTHO05D003505 7.5e-18 94.0 105 56.2
MELO3C013933.2 Cucumis melo HOM05D006762 ORTHO05D003505 7.5e-18 94.0 105 56.2
Gorai.004G198000 Gossypium raimondii HOM05D006762 ORTHO05D003505 1.3e-17 93.2 108 61.1
Lalb_Chr09g0330061 Lupinus albus HOM05D006762 ORTHO05D003505 1.7e-17 92.8 104 56.7
TWI60G1284 Tripterygium wilfordii HOM05D006762 ORTHO05D003505 4.8e-17 91.3 99 63.6
Rhsim07G0109700 Rhododendron simsii HOM05D006762 ORTHO05D003505 1.8e-16 89.4 97 59.8
HanXRQChr03g0087771 Helianthus annuus HOM05D006762 ORTHO05D003505 2.4e-16 89.0 95 58.9
Sed0021009 Sechium edule HOM05D006762 ORTHO05D003505 2.4e-16 89.0 107 55.1
Dinv39153 Davidia involucrata HOM05D000502 ORTHO05D000356 4.1e-16 88.2 89 64.0
Duzib084G1100 Durio zibethinus HOM05D006762 ORTHO05D003505 7.0e-16 87.4 99 57.6
A06p45070 Brassica napus HOM05D006762 ORTHO05D003505 9.1e-16 87.0 111 56.8
Cc08_g12340 Coffea canephora HOM05D006762 ORTHO05D003505 9.1e-16 87.0 103 59.2
ECA240G1429 Erigeron canadensis HOM05D006762 ORTHO05D003505 1.2e-15 86.7 95 56.8
Lalb_Chr16g0386731 Lupinus albus HOM05D006762 ORTHO05D003505 1.2e-15 86.7 96 59.4
FAN13G0097 Fragaria x ananassa HOM05D000502 ORTHO05D000356 2.7e-15 85.5 105 54.3
CiPaw.12G051800 Carya illinoinensis HOM05D006762 ORTHO05D003505 4.5e-15 84.7 98 54.1
Thhalv10001082m.g Eutrema salsugineum HOM05D006762 ORTHO05D003505 5.9e-15 84.3 102 53.9
FAN18G2762 Fragaria x ananassa HOM05D006762 ORTHO05D003505 5.9e-15 84.3 105 54.3
CARHR173910 Cardamine hirsuta HOM05D006762 ORTHO05D003505 7.7e-15 84.0 100 54.0
FAN08G1018 Fragaria x ananassa HOM05D006762 ORTHO05D003505 7.7e-15 84.0 105 54.3
MD04G1063100 Malus domestica HOM05D006762 ORTHO05D003505 7.7e-15 84.0 97 56.7
Potri.017G068600 Populus trichocarpa HOM05D006762 ORTHO05D003505 7.7e-15 84.0 107 52.3
FAN04G0434 Fragaria x ananassa HOM05D006762 ORTHO05D003505 1.3e-14 83.2 105 53.3
Duzib205G1027 Durio zibethinus HOM05D006762 ORTHO05D003505 1.7e-14 82.8 104 56.7
Glyma.05G060100 Glycine max HOM05D006762 ORTHO05D003505 1.7e-14 82.8 94 59.6
Potri.001G333800 Populus trichocarpa HOM05D006762 ORTHO05D003505 2.2e-14 82.4 97 54.6
BcaC03g16962 Brassica carinata HOM05D006762 ORTHO05D003505 2.9e-14 82.0 102 55.9
Glyma.17G142500 Glycine max HOM05D006762 ORTHO05D003505 2.9e-14 82.0 94 62.8
TPR.G37627 Trifolium pratense HOM05D006762 ORTHO05D003505 3.8e-14 81.6 96 57.3
Nn6g33933 Nelumbo nucifera HOM05D006762 ORTHO05D003505 5.0e-14 81.3 102 52.9
Nitab4.5_0000882g0040 Nicotiana tabacum HOM05D006762 ORTHO05D003505 5.0e-14 81.3 109 55.0
Prupe.5G068300 Prunus persica HOM05D006762 ORTHO05D003505 6.5e-14 80.9 95 57.9
CsaV3_3G002630 Cucumis sativus L. HOM05D006762 ORTHO05D003505 8.5e-14 80.5 96 54.2
RcHm_v2.0_Chr7g0203511 Rosa chinensis HOM05D006762 ORTHO05D003505 1.1e-13 80.1 97 56.7
AL8G10530 Arabidopsis lyrata HOM05D006762 ORTHO05D003505 1.5e-13 79.7 98 51.0
Carub.0007s2409 Capsella rubella HOM05D006762 ORTHO05D003505 3.2e-13 78.6 94 53.2
Ca_21971_v3 Cicer arietinum L. HOM05D006762 ORTHO05D003505 4.2e-13 78.2 97 59.8
Thecc.03G250100 Theobroma cacao HOM05D006762 ORTHO05D003505 4.2e-13 78.2 98 56.1
arahy.Tifrunner.gnm1.ann1.YI4YN9 Arachis hypogaea HOM05D006762 ORTHO05D003505 5.5e-13 77.8 105 53.3
Carub.0008s0032 Capsella rubella HOM05D006762 ORTHO05D003505 5.5e-13 77.8 95 52.6
Phvul.003G221200 Phaseolus vulgaris HOM05D006762 ORTHO05D003505 5.5e-13 77.8 96 58.3
CANSAT21G1567 Cannabis sativa HOM05D006762 ORTHO05D003505 9.5e-13 77.0 100 52.0
BraA06t27376Z Brassica rapa HOM05D006762 ORTHO05D003505 1.2e-12 76.6 100 54.0
QL04p035820 Quercus lobata HOM05D006762 ORTHO05D003505 2.7e-12 75.5 105 52.4
SalBow4G0096 Salvia bowleyana HOM05D006762 ORTHO05D003505 3.6e-12 75.1 89 55.1
SalBow4G2872 Salvia bowleyana HOM05D006762 ORTHO05D003505 3.6e-12 75.1 89 55.1
SEGI_29263 Sequoiadendron giganteum HOM05D006762 ORTHO05D003505 4.7e-12 74.7 107 47.7
AT5G47455 Arabidopsis thaliana HOM05D006762 ORTHO05D003505 1.0e-11 73.6 96 49.0
AUR62019952 Chenopodium quinoa HOM05D006762 ORTHO05D003505 1.0e-11 73.6 105 48.6
BolC7t43652H Brassica oleracea HOM05D006762 ORTHO05D003505 1.8e-11 72.8 96 54.2
THA.LOC104812806 Tarenaya hassleriana HOM05D006762 ORTHO05D003505 1.8e-11 72.8 94 48.9
PGR031G2035 Punica granatum HOM05D006762 ORTHO05D003505 3.0e-11 72.0 97 52.6
AT4G17310 Arabidopsis thaliana HOM05D006762 ORTHO05D003505 5.2e-11 71.2 94 50.0
AUR62007089 Chenopodium quinoa HOM05D006762 ORTHO05D003505 5.2e-11 71.2 105 47.6
Nitab4.5_0001501g0020 Nicotiana tabacum HOM05D006762 ORTHO05D003505 6.8e-11 70.9 105 53.3
Manes.02G040300 Manihot esculenta HOM05D006762 ORTHO05D003505 2.6e-10 68.9 98 48.0
FvH4_5g19060 Fragaria vesca HOM05D006762 ORTHO05D003505 3.4e-10 68.6 94 50.0
arahy.Tifrunner.gnm1.ann1.A5XQNM Arachis hypogaea HOM05D006762 ORTHO05D003505 1.3e-09 66.6 96 52.1
CDE12G0636 Ceratophyllum demersum HOM05D006762 ORTHO05D003505 1.7e-09 66.2 105 46.7
arahy.Tifrunner.gnm1.ann1.QP3VPD Arachis hypogaea HOM05D006762 ORTHO05D003505 8.3e-09 63.9 96 51.0
CSS0021998 Camellia sinensis var. sinensis HOM05D006762 ORTHO05D003505 2.4e-08 62.4 94 50.0
Glyma.18G109000 Glycine max HOM05D006762 ORTHO05D003505 2.4e-08 62.4 93 50.5
Glyma.17G210100 Glycine max HOM05D006762 ORTHO05D003505 3.1e-08 62.0 93 51.6
THA.LOC104811265 Tarenaya hassleriana HOM05D007429 ORTHO05D003505 3.1e-08 62.0 108 47.2
A10p26140 Brassica napus HOM05D007429 ORTHO05D003505 5.4e-08 61.2 108 45.4
ATR0317G117 Amborella trichopoda HOM05D006762 ORTHO05D003505 7.0e-08 60.8 99 49.5
BcaC04g19209 Brassica carinata HOM05D007429 ORTHO05D003505 7.0e-08 60.8 108 44.4
C09p65190 Brassica napus HOM05D007429 ORTHO05D003505 7.0e-08 60.8 108 44.4
BolC9t59348H Brassica oleracea HOM05D007429 ORTHO05D003505 7.0e-08 60.8 108 44.4
Potri.006G237800 Populus trichocarpa HOM05D007429 ORTHO05D003505 9.2e-08 60.5 92 45.7
Actinidia13337 Actinidia chinensis HOM05D007429 ORTHO05D003505 1.2e-07 60.1 84 48.8
Thecc.09G045900 Theobroma cacao HOM05D007429 ORTHO05D003505 1.2e-07 60.1 92 47.8
Sabra06G0186000 Salix brachista HOM05D007429 ORTHO05D003505 1.6e-07 59.7 92 45.7
BraA10t44673Z Brassica rapa HOM05D007429 ORTHO05D003505 2.0e-07 59.3 108 44.4
Migut.E01531 Erythranthe guttata HOM05D007429 ORTHO05D003505 2.0e-07 59.3 105 43.8
Gorai.009G049400 Gossypium raimondii HOM05D007429 ORTHO05D003505 2.0e-07 59.3 106 45.3
Nn6g35292 Nelumbo nucifera HOM05D007429 ORTHO05D003505 2.0e-07 59.3 94 42.6
Sp6g31990 Schrenkiella parvula HOM05D007429 ORTHO05D003505 2.0e-07 59.3 108 44.4
Aqoxy7G01463 Aquilegia oxysepala HOM05D007429 ORTHO05D003505 2.7e-07 58.9 54 57.4
BcaB08g37037 Brassica carinata HOM05D007429 ORTHO05D003505 3.5e-07 58.5 108 44.4
arahy.Tifrunner.gnm1.ann1.8JK4ZI Arachis hypogaea HOM05D006762 ORTHO05D003505 4.5e-07 58.2 95 49.5
EL10Ac2g04004 Beta vulgaris HOM05D007429 ORTHO05D003505 4.5e-07 58.2 105 43.8
Oeu030718.1 Olea europaea HOM05D007429 ORTHO05D003505 5.9e-07 57.8 76 46.1
AT5G11630 Arabidopsis thaliana HOM05D007429 ORTHO05D003505 7.7e-07 57.4 108 43.5
AUR62009266 Chenopodium quinoa HOM05D007429 ORTHO05D003505 7.7e-07 57.4 85 44.7
AUR62042440 Chenopodium quinoa HOM05D007429 ORTHO05D003505 7.7e-07 57.4 85 44.7
AL6G22340 Arabidopsis lyrata HOM05D007429 ORTHO05D003505 1.0e-06 57.0 108 43.5
Os02g0658300 Oryza sativa ssp. japonica HOM05D006762 ORTHO05D003505 1.0e-06 57.0 86 52.3
Duzib187G1405 Durio zibethinus HOM05D007429 ORTHO05D003505 1.3e-06 56.6 89 44.9
CiPaw.08G026200 Carya illinoinensis HOM05D007429 ORTHO05D003505 1.7e-06 56.2 105 43.8
MD15G1092600 Malus domestica HOM05D007429 ORTHO05D003505 1.7e-06 56.2 97 44.3
Ca_15587_v3 Cicer arietinum L. HOM05D002792 ORTHO05D003039 2.3e-06 55.8 51 56.9
DCAR_000754 Daucus carota HOM05D002792 ORTHO05D003039 2.3e-06 55.8 48 56.2
Dinv23374 Davidia involucrata HOM05D007429 ORTHO05D003505 2.3e-06 55.8 77 45.5
arahy.Tifrunner.gnm1.ann1.R0MHDP Arachis hypogaea HOM05D007429 ORTHO05D003505 2.9e-06 55.5 45 62.2
arahy.Tifrunner.gnm1.ann1.ZH3G1A Arachis hypogaea HOM05D007429 ORTHO05D003505 2.9e-06 55.5 45 62.2
Hund19504 Selenicereus undatus HOM05D007429 ORTHO05D003505 2.9e-06 55.5 107 44.9
Sc09g0009340 Simmondsia chinensis HOM05D007429 ORTHO05D003505 2.9e-06 55.5 105 44.8
CDE02G4418 Ceratophyllum demersum HOM05D007429 ORTHO05D003505 3.8e-06 55.1 98 42.9
Carub.0006s1011 Capsella rubella HOM05D007429 ORTHO05D003505 5.0e-06 54.7 108 42.6
Glyma.03G118000 Glycine max HOM05D006762 ORTHO05D022366 5.0e-06 54.7 100 43.0
MBI01_g42895_MAGBIO Magnolia biondii HOM05D007429 ORTHO05D003505 5.0e-06 54.7 49 57.1
Manes.16G075000 Manihot esculenta HOM05D007429 ORTHO05D003505 5.0e-06 54.7 105 42.9
CSS0037511 Camellia sinensis var. sinensis HOM05D007429 ORTHO05D003505 6.6e-06 54.3 105 41.9
ClCG11G015140 Citrullus lanatus HOM05D007429 ORTHO05D003505 6.6e-06 54.3 105 44.8
FAN27G3027 Fragaria x ananassa HOM05D007429 ORTHO05D003505 6.6e-06 54.3 97 42.3
Lj1g0025254 Lotus japonicus HOM05D007429 ORTHO05D003505 6.6e-06 54.3 106 44.3
Actinidia14679 Actinidia chinensis HOM05D007429 ORTHO05D003505 8.6e-06 53.9 105 41.9
VMungo1309G0862 Vigna mungo HOM05D007429 ORTHO05D003505 8.6e-06 53.9 50 56.0


User provided reference genes

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