Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1058.24 Capsicum annuum HOM05D004155 ORTHO05D004837 5.5e-136 487.6 249 100.0
PGSC0003DMG400004812 Solanum tuberosum HOM05D004155 ORTHO05D004837 3.2e-128 461.8 249 94.8
Nitab4.5_0005960g0040 Nicotiana tabacum HOM05D004155 ORTHO05D004837 4.8e-124 448.0 249 91.2
PGSC0003DMG400011880 Solanum tuberosum HOM05D004155 ORTHO05D004837 1.2e-114 416.8 249 85.5
Sopen06g020840 Solanum pennellii HOM05D004155 ORTHO05D004837 4.5e-114 414.8 249 85.5
Solyc06g060720.3 Solanum lycopersicum HOM05D004155 ORTHO05D004837 1.0e-113 413.7 249 85.1
Nitab4.5_0000312g0050 Nicotiana tabacum HOM05D004155 ORTHO05D004837 1.0e-110 403.7 219 91.8
CAN.G62.43 Capsicum annuum HOM05D004155 ORTHO05D004837 8.8e-110 400.6 249 83.1
Peaxi162Scf00174g00143 Petunia axillaris HOM05D004155 ORTHO05D004837 6.3e-108 394.4 228 89.0
Cc08_g12420 Coffea canephora HOM05D004155 ORTHO05D004837 1.0e-97 360.5 246 74.8
MELO3C013940.2 Cucumis melo HOM05D004155 ORTHO05D004837 1.1e-96 357.1 246 75.2
Lj2A217G31 Lonicera japonica HOM05D004155 ORTHO05D004837 1.9e-96 356.3 246 77.2
Actinidia22301 Actinidia chinensis HOM05D004155 ORTHO05D004837 4.3e-96 355.1 246 74.0
CSS0005110 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 4.3e-96 355.1 250 76.8
CSS0021878 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 4.3e-96 355.1 250 76.8
ClCG10G002690 Citrullus lanatus HOM05D004155 ORTHO05D004837 5.6e-96 354.8 245 74.3
Thecc.03G251400 Theobroma cacao HOM05D004155 ORTHO05D004837 1.6e-95 353.2 249 74.3
Haze_07913 Corylus avellana HOM05D004155 ORTHO05D004837 4.7e-95 351.7 249 73.9
Nitab4.5_0000618g0060 Nicotiana tabacum HOM05D004155 ORTHO05D004837 1.1e-94 350.5 217 84.8
GSVIVG01001328001 Vitis vinifera HOM05D004155 ORTHO05D004837 1.1e-94 350.5 246 74.4
Hma1.2p1_0316F.1_g123160 Hydrangea macrophylla HOM05D004155 ORTHO05D004837 1.4e-94 350.1 248 74.6
Atru.chr9.1312 Acer truncatum HOM05D004155 ORTHO05D004837 3.1e-94 349.0 248 73.4
Cfa012719 Carpinus fangiana HOM05D004155 ORTHO05D004837 3.1e-94 349.0 249 73.5
Oeu026407.1 Olea europaea HOM05D004155 ORTHO05D004837 5.2e-94 348.2 253 73.9
CsaV3_3G002720 Cucumis sativus L. HOM05D004155 ORTHO05D004837 6.8e-94 347.8 246 74.8
Gohir.A08G170500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 6.8e-94 347.8 249 72.3
Gohir.D08G188700 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.5e-93 346.7 249 71.9
Gorai.004G198700 Gossypium raimondii HOM05D004155 ORTHO05D004837 1.5e-93 346.7 249 71.9
CiPaw.12G052800 Carya illinoinensis HOM05D004155 ORTHO05D004837 2.6e-93 345.9 249 73.5
DCAR_006831 Daucus carota HOM05D004155 ORTHO05D004837 9.8e-93 344.0 248 72.6
Nitab4.5_0001076g0090 Nicotiana tabacum HOM05D004155 ORTHO05D004837 9.8e-93 344.0 206 85.4
Duzib136G0003 Durio zibethinus HOM05D004155 ORTHO05D004837 1.3e-92 343.6 250 71.6
VMungo0251G3701 Vigna mungo HOM05D004155 ORTHO05D004837 2.9e-92 342.4 246 73.2
Manes.01G080600 Manihot esculenta HOM05D004155 ORTHO05D004837 6.4e-92 341.3 255 71.4
Duzib068G1244 Durio zibethinus HOM05D004155 ORTHO05D004837 8.3e-92 340.9 249 70.3
Medtr4g100930 Medicago truncatula HOM05D004155 ORTHO05D004837 8.3e-92 340.9 251 72.1
MD06G1058700 Malus domestica HOM05D004155 ORTHO05D004837 1.9e-91 339.7 249 71.9
PGR142G3296 Punica granatum HOM05D004155 ORTHO05D004837 2.4e-91 339.3 251 72.5
EL10Ac9g21736 Beta vulgaris HOM05D004155 ORTHO05D004837 3.2e-91 339.0 246 71.1
QL12p012142 Quercus lobata HOM05D004155 ORTHO05D004837 4.1e-91 338.6 247 72.9
Gohir.D12G219500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 2.7e-90 335.9 249 70.3
CANSAT21G0249 Cannabis sativa HOM05D004155 ORTHO05D004837 6.0e-90 334.7 256 70.7
Gorai.008G235200 Gossypium raimondii HOM05D004155 ORTHO05D004837 6.0e-90 334.7 249 70.3
SGA_v2.0_scaffold146G36157 Striga asiatica HOM05D004155 ORTHO05D004837 7.8e-90 334.3 250 72.4
MSTRG.12099 Avicennia marina HOM05D004155 ORTHO05D004837 1.0e-89 334.0 254 72.4
Glyma.17G141800 Glycine max HOM05D004155 ORTHO05D004837 1.0e-89 334.0 250 70.8
MSTRG.25524 Avicennia marina HOM05D004155 ORTHO05D004837 1.3e-89 333.6 255 69.4
Phvul.003G220600 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 1.3e-89 333.6 246 71.5
Manes.02G039600 Manihot esculenta HOM05D004155 ORTHO05D004837 3.0e-89 332.4 252 70.6
Sed0004864 Sechium edule HOM05D004155 ORTHO05D004837 3.9e-89 332.0 247 71.3
DCAR_008491 Daucus carota HOM05D004155 ORTHO05D004837 5.0e-89 331.6 250 70.0
Ca_21966_v3 Cicer arietinum L. HOM05D004155 ORTHO05D004837 6.6e-89 331.3 248 70.2
COL.COLO4_37174 Corchorus olitorius HOM05D004155 ORTHO05D004837 6.6e-89 331.3 266 67.7
Oeu040215.1 Olea europaea HOM05D004155 ORTHO05D004837 6.6e-89 331.3 242 75.2
Lalb_Chr09g0330111 Lupinus albus HOM05D004155 ORTHO05D004837 1.1e-88 330.5 252 70.6
Gohir.A12G217000 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.5e-88 330.1 249 69.5
Lalb_Chr16g0386681 Lupinus albus HOM05D004155 ORTHO05D004837 1.5e-88 330.1 252 68.7
Prupe.5G069700 Prunus persica HOM05D004155 ORTHO05D004837 1.9e-88 329.7 248 70.6
Eucgr.I02746 Eucalyptus grandis HOM05D004155 ORTHO05D004837 3.3e-88 328.9 252 70.2
TWI81G0233 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 3.3e-88 328.9 246 72.0
Potri.003G077000 Populus trichocarpa HOM05D004155 ORTHO05D004837 4.3e-88 328.6 258 69.8
Ciclev10021960m.g Citrus clementina HOM05D004155 ORTHO05D004837 5.6e-88 328.2 247 70.0
Dinv21638 Davidia involucrata HOM05D004155 ORTHO05D004837 5.6e-88 328.2 220 76.4
Sc01g0008440 Simmondsia chinensis HOM05D004155 ORTHO05D004837 5.6e-88 328.2 246 71.5
Glyma.05G059400 Glycine max HOM05D004155 ORTHO05D004837 1.2e-87 327.0 250 70.8
TAR374G0401 Trochodendron aralioides HOM05D004155 ORTHO05D004837 2.1e-87 326.2 247 68.8
Aqoxy5G03883 Aquilegia oxysepala HOM05D004155 ORTHO05D004837 2.8e-87 325.9 252 67.9
Nn6g33959 Nelumbo nucifera HOM05D004155 ORTHO05D004837 3.6e-87 325.5 246 69.5
ECA240G3289 Erigeron canadensis HOM05D004155 ORTHO05D004837 4.7e-87 325.1 255 69.8
TAR374G0168 Trochodendron aralioides HOM05D004155 ORTHO05D004837 4.7e-87 325.1 247 68.8
HanXRQChr03g0088551 Helianthus annuus HOM05D004155 ORTHO05D004837 6.2e-87 324.7 235 73.2
Lj4g0023659 Lotus japonicus HOM05D004155 ORTHO05D004837 6.2e-87 324.7 250 69.2
SalBow5G4949 Salvia bowleyana HOM05D004155 ORTHO05D004837 1.1e-86 323.9 235 73.2
TWI60G0516 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 1.4e-86 323.6 247 70.0
Duzib084G0799 Durio zibethinus HOM05D004155 ORTHO05D004837 1.8e-86 323.2 249 68.3
Potri.001G157900 Populus trichocarpa HOM05D004155 ORTHO05D004837 3.1e-86 322.4 260 67.7
TPR.G11991 Trifolium pratense HOM05D004155 ORTHO05D004837 5.2e-86 321.6 251 69.7
SGA_v2.0_scaffold120G32880 Striga asiatica HOM05D004155 ORTHO05D004837 6.8e-86 321.2 240 70.4
FAN18G2873 Fragaria x ananassa HOM05D004155 ORTHO05D004837 1.2e-85 320.5 248 68.5
FAN18G3217 Fragaria x ananassa HOM05D004155 ORTHO05D004837 1.2e-85 320.5 248 68.5
FAN18G4261 Fragaria x ananassa HOM05D004155 ORTHO05D004837 1.2e-85 320.5 248 68.5
FvH4_5g18890 Fragaria vesca HOM05D004155 ORTHO05D004837 2.0e-85 319.7 248 68.1
FAN08G3385 Fragaria x ananassa HOM05D004155 ORTHO05D004837 2.6e-85 319.3 248 68.1
FAN04G2128 Fragaria x ananassa HOM05D004155 ORTHO05D004837 7.5e-85 317.8 248 68.1
FAN13G1725 Fragaria x ananassa HOM05D004155 ORTHO05D004837 2.2e-84 316.2 247 67.6
RcHm_v2.0_Chr7g0203271 Rosa chinensis HOM05D004155 ORTHO05D004837 6.4e-84 314.7 248 67.3
Sp3g02480 Schrenkiella parvula HOM05D004155 ORTHO05D004837 1.4e-83 313.5 252 65.1
Thhalv10014511m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 4.1e-83 312.0 252 65.5
Lsat_1_v5_gn_6_91040 Lactuca sativa HOM05D004155 ORTHO05D004837 7.1e-83 311.2 244 70.5
HanXRQChr06g0164361 Helianthus annuus HOM05D004155 ORTHO05D004837 9.2e-83 310.8 247 67.6
Migut.A00944 Erythranthe guttata HOM05D004155 ORTHO05D004837 1.2e-82 310.5 238 69.7
Ah.11g040960 Amaranthus hybridus HOM05D004155 ORTHO05D004837 1.0e-81 307.4 233 69.5
CARHR077510 Cardamine hirsuta HOM05D004155 ORTHO05D004837 1.3e-81 307.0 254 64.2
CARHR195630 Cardamine hirsuta HOM05D004155 ORTHO05D004837 2.3e-81 306.2 247 64.8
THA.LOC104802903 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 3.0e-81 305.8 249 65.1
Ah.11g040940 Amaranthus hybridus HOM05D004155 ORTHO05D004837 5.1e-81 305.1 240 67.9
PSO063G2044 Papaver somniferum HOM05D004155 ORTHO05D004837 8.6e-81 304.3 259 64.5
Aa31LG11G12130 Aethionema arabicum HOM05D004155 ORTHO05D004837 1.1e-80 303.9 246 63.4
PSO782G0374 Papaver somniferum HOM05D004155 ORTHO05D004837 1.1e-80 303.9 259 64.9
BcaB08g36763 Brassica carinata HOM05D004155 ORTHO05D004837 1.5e-80 303.5 253 64.0
C09p59610 Brassica napus HOM05D004155 ORTHO05D004837 1.5e-80 303.5 252 63.5
BcaC04g18780 Brassica carinata HOM05D004155 ORTHO05D004837 1.9e-80 303.1 255 63.1
A10p21850 Brassica napus HOM05D004155 ORTHO05D004837 1.9e-80 303.1 251 63.7
Psat4g072240 Pisum sativum HOM05D004155 ORTHO05D004837 1.9e-80 303.1 250 66.4
Sp6g26670 Schrenkiella parvula HOM05D004155 ORTHO05D004837 1.9e-80 303.1 247 64.0
Carub.0006s1579 Capsella rubella HOM05D004155 ORTHO05D004837 2.5e-80 302.8 253 64.8
BolC9t58800H Brassica oleracea HOM05D004155 ORTHO05D004837 3.3e-80 302.4 257 62.6
BraA03t12501Z Brassica rapa HOM05D004155 ORTHO05D004837 5.6e-80 301.6 249 63.1
BraA10t44245Z Brassica rapa HOM05D004155 ORTHO05D004837 5.6e-80 301.6 251 63.3
Carub.0003s0263 Capsella rubella HOM05D004155 ORTHO05D004837 9.5e-80 300.8 251 63.3
AUR62016725 Chenopodium quinoa HOM05D004155 ORTHO05D004837 3.6e-79 298.9 246 65.4
BcaB04g19367 Brassica carinata HOM05D004155 ORTHO05D004837 6.2e-79 298.1 256 63.3
AT5G17550 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 8.1e-79 297.7 246 63.0
AL3G13170 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 2.4e-78 296.2 252 62.3
AL6G28640 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 2.4e-78 296.2 246 63.0
TAR375G0135 Trochodendron aralioides HOM05D004155 ORTHO05D004837 2.4e-78 296.2 232 67.7
AT3G03490 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 4.0e-78 295.4 254 61.4
arahy.Tifrunner.gnm1.ann1.FN76PE Arachis hypogaea HOM05D004155 ORTHO05D004837 6.8e-78 294.7 249 65.9
THA.LOC104820827 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 6.8e-78 294.7 250 63.2
unitig_37.g12342 Utricularia gibba HOM05D004155 ORTHO05D004837 1.5e-77 293.5 251 63.3
Sabra03G0047400 Salix brachista HOM05D004155 ORTHO05D004837 4.4e-77 292.0 318 55.3
arahy.Tifrunner.gnm1.ann1.9Q5ZL0 Arachis hypogaea HOM05D004155 ORTHO05D004837 9.9e-77 290.8 233 68.7
MBI04_g09499_MAGBIO Magnolia biondii HOM05D004155 ORTHO05D004837 9.9e-77 290.8 263 63.1
Aa31LG5G14010 Aethionema arabicum HOM05D004155 ORTHO05D004837 1.3e-76 290.4 250 60.8
BcaC01g04400 Brassica carinata HOM05D004155 ORTHO05D004837 8.4e-76 287.7 253 62.1
C03p40540 Brassica napus HOM05D004155 ORTHO05D004837 8.4e-76 287.7 253 62.1
BolC3t16319H Brassica oleracea HOM05D004155 ORTHO05D004837 8.4e-76 287.7 253 62.1
Sabra01G0133600 Salix brachista HOM05D004155 ORTHO05D004837 1.4e-75 287.0 326 53.4
A03p33290 Brassica napus HOM05D004155 ORTHO05D004837 5.4e-75 285.0 253 62.1
Rhsim02G0215900 Rhododendron simsii HOM05D004155 ORTHO05D004837 6.6e-73 278.1 317 53.3
Ah.11g040910 Amaranthus hybridus HOM05D004155 ORTHO05D004837 1.1e-72 277.3 232 64.7
HPP92_007424 Vanilla planifolia HOM05D004155 ORTHO05D004837 1.7e-68 263.5 261 57.1
CDE11G1226 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 2.4e-67 259.6 249 57.0
ATR0317G023 Amborella trichopoda HOM05D004155 ORTHO05D004837 7.3e-64 248.1 246 58.9
CDE09G1113 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 2.8e-63 246.1 250 57.2
Actinidia13193 Actinidia chinensis HOM05D004155 ORTHO05D004837 3.1e-62 242.7 152 77.6
Os02g0661000 Oryza sativa ssp. japonica HOM05D004155 ORTHO05D004837 6.9e-62 241.5 252 53.6
Zm00001eb249680 Zea mays HOM05D004155 ORTHO05D004837 9.0e-62 241.1 245 54.3
Ah.11g040970 Amaranthus hybridus HOM05D004155 ORTHO05D004837 1.2e-61 240.7 243 56.8
Phvul.003G220550 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 2.0e-61 240.0 147 78.2
Nn1g00995 Nelumbo nucifera HOM05D004155 ORTHO05D004837 1.9e-59 233.4 233 57.9
vmacro11263 Vaccinium macrocarpon HOM05D004155 ORTHO05D004837 7.1e-59 231.5 136 82.4
Zm00001eb186660 Zea mays HOM05D004155 ORTHO05D004837 1.1e-56 224.2 250 52.4
Gorai.003G171500 Gossypium raimondii HOM05D004155 ORTHO05D004837 2.0e-53 213.4 216 55.6
Gohir.D03G162900 Gossypium hirsutum HOM05D004155 ORTHO05D004837 3.4e-53 212.6 167 64.7
Gohir.A03G008100 Gossypium hirsutum HOM05D004155 ORTHO05D004837 2.2e-52 209.9 167 63.5
Pp3c2_16800 Physcomitrium patens HOM05D004155 ORTHO05D004837 4.5e-45 185.7 268 45.9
Ah.11g040930 Amaranthus hybridus HOM05D004155 ORTHO05D004837 1.9e-43 180.3 191 55.5
Cpa.g.sc43.156 Carica papaya HOM05D004155 ORTHO05D004837 3.2e-43 179.5 121 71.9
Mapoly0045s0092 Marchantia polymorpha HOM05D004155 ORTHO05D004837 4.2e-43 179.1 291 41.6
TPR.G37592 Trifolium pratense HOM05D004155 ORTHO05D004837 1.9e-40 170.2 117 73.5
CBR_g22421 Chara braunii HOM05D004155 ORTHO05D004837 7.2e-35 151.8 271 39.5
Actinidia14427 Actinidia chinensis HOM05D004155 ORTHO05D004837 5.1e-33 145.6 128 64.1
Cpa.g.sc43.157 Carica papaya HOM05D004155 ORTHO05D004837 8.8e-33 144.8 130 65.4
CAN.G1058.18 Capsicum annuum HOM05D002401 ORTHO05D007109 2.4e-30 136.7 69 94.2
AagrBONN_evm.TU.Sc2ySwM_228.1233 Anthoceros agrestis HOM05D004155 ORTHO05D004837 4.1e-30 136.0 269 37.2
SMO146G0254 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 2.3e-25 120.2 95 63.2
PGSC0003DMG400045666 Solanum tuberosum HOM05D004155 ORTHO05D004837 2.6e-24 116.7 78 76.9
SMO340G0179 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 1.3e-23 114.4 87 63.2
TPR.G37609 Trifolium pratense HOM05D004155 ORTHO05D004837 2.2e-23 113.6 99 64.6
Thhalv10015034m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 1.6e-18 97.4 98 58.2
PRCOL_00005614 Prasinoderma coloniale HOM05D004155 ORTHO05D004837 6.7e-17 92.0 110 39.1
PSO384G2334 Papaver somniferum HOM05D004155 ORTHO05D004837 1.5e-16 90.9 120 48.3
arahy.Tifrunner.gnm1.ann1.Z2VGSW Arachis hypogaea HOM05D004155 ORTHO05D004837 5.7e-16 89.0 78 65.4
Cre02.g119000 Chlamydomonas reinhardtii HOM05D004155 ORTHO05D004837 5.7e-16 89.0 128 39.8
arahy.Tifrunner.gnm1.ann1.BEL5CJ Arachis hypogaea HOM05D004155 ORTHO05D004837 2.4e-14 83.6 78 61.5
Pp3c1_22650 Physcomitrium patens HOM05D004155 ORTHO05D004837 2.1e-10 70.5 81 50.6
ECA247G1153 Erigeron canadensis HOM05D004155 ORTHO05D004837 4.7e-10 69.3 92 47.8
SEGI_17945 Sequoiadendron giganteum HOM05D004155 ORTHO05D004837 8.8e-09 65.1 135 43.7
Cfa022446 Carpinus fangiana HOM05D004155 ORTHO05D126510 1.2e-08 64.7 167 31.1


User provided reference genes

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