Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G105.1 Capsicum annuum HOM05D004835 ORTHO05D006046 7.3e-215 750.4 401 100.0
Sopen10g001360 Solanum pennellii HOM05D004835 ORTHO05D006046 1.3e-179 633.3 407 82.1
Solyc10g005370.3 Solanum lycopersicum HOM05D004835 ORTHO05D006046 3.8e-179 631.7 407 81.6
PGSC0003DMG400011280 Solanum tuberosum HOM05D004835 ORTHO05D006046 1.6e-169 599.7 409 79.0
Nitab4.5_0003738g0050 Nicotiana tabacum HOM05D004835 ORTHO05D006046 9.7e-167 590.5 406 81.0
Nitab4.5_0006795g0010 Nicotiana tabacum HOM05D004835 ORTHO05D006046 5.3e-165 584.7 406 80.3
CiPaw.10G068200 Carya illinoinensis HOM05D004835 ORTHO05D006046 3.5e-140 502.3 405 66.4
Lj1A1224G37 Lonicera japonica HOM05D004835 ORTHO05D006046 1.3e-139 500.4 380 68.9
QL05p075217 Quercus lobata HOM05D004835 ORTHO05D006046 8.6e-139 497.7 387 67.2
Peaxi162Scf00678g00310 Petunia axillaris HOM05D004835 ORTHO05D006046 1.9e-138 496.5 407 69.5
Oeu030985.2 Olea europaea HOM05D004835 ORTHO05D006046 1.2e-137 493.8 447 61.5
Hma1.2p1_0091F.1_g046150 Hydrangea macrophylla HOM05D004835 ORTHO05D006046 3.6e-137 492.3 381 68.0
Thecc.06G213800 Theobroma cacao HOM05D004835 ORTHO05D006046 3.6e-137 492.3 402 64.9
Atru.chr10.2145 Acer truncatum HOM05D004835 ORTHO05D006046 6.1e-137 491.5 404 65.8
PGR004G0955 Punica granatum HOM05D004835 ORTHO05D006046 1.4e-136 490.3 382 67.8
Gorai.010G176900 Gossypium raimondii HOM05D004835 ORTHO05D006046 4.0e-136 488.8 384 66.9
Manes.16G012700 Manihot esculenta HOM05D004835 ORTHO05D006046 5.2e-136 488.4 380 67.9
Ciclev10015558m.g Citrus clementina HOM05D004835 ORTHO05D006046 6.8e-136 488.0 400 63.8
Gohir.A06G145700 Gossypium hirsutum HOM05D004835 ORTHO05D006046 6.8e-136 488.0 389 66.3
Sabra04G0012600 Salix brachista HOM05D004835 ORTHO05D006046 2.6e-135 486.1 389 66.1
TAR626G1121 Trochodendron aralioides HOM05D004835 ORTHO05D006046 9.8e-135 484.2 396 64.4
COL.COLO4_31722 Corchorus olitorius HOM05D004835 ORTHO05D006046 1.7e-134 483.4 402 63.7
MSTRG.13160 Avicennia marina HOM05D004835 ORTHO05D006046 2.9e-134 482.6 381 65.4
CANSAT56G3094 Cannabis sativa HOM05D004835 ORTHO05D006046 3.7e-134 482.3 382 70.7
Eucgr.D00815 Eucalyptus grandis HOM05D004835 ORTHO05D006046 1.1e-133 480.7 415 65.3
Potri.004G022900 Populus trichocarpa HOM05D004835 ORTHO05D006046 1.1e-133 480.7 410 62.9
arahy.Tifrunner.gnm1.ann1.P6UBAG Arachis hypogaea HOM05D004835 ORTHO05D006046 1.4e-133 480.3 381 66.9
Prupe.4G026400 Prunus persica HOM05D004835 ORTHO05D006046 1.8e-133 479.9 412 62.6
ClCG03G004990 Citrullus lanatus HOM05D004835 ORTHO05D006046 2.4e-133 479.6 385 64.7
TWI63G0472 Tripterygium wilfordii HOM05D004835 ORTHO05D006046 7.0e-133 478.0 377 66.3
arahy.Tifrunner.gnm1.ann1.06HJR7 Arachis hypogaea HOM05D004835 ORTHO05D006046 1.6e-132 476.9 381 65.9
CsaV3_1G011070 Cucumis sativus L. HOM05D004835 ORTHO05D006046 2.0e-132 476.5 383 64.2
Nn1g07024 Nelumbo nucifera HOM05D004835 ORTHO05D006046 2.0e-132 476.5 380 65.8
MELO3C002484.2 Cucumis melo HOM05D004835 ORTHO05D006046 3.5e-132 475.7 380 64.7
CSS0008490 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 7.8e-132 474.6 391 64.2
Actinidia26949 Actinidia chinensis HOM05D004835 ORTHO05D006046 1.0e-131 474.2 408 61.8
RcHm_v2.0_Chr5g0004011 Rosa chinensis HOM05D004835 ORTHO05D006046 3.0e-131 472.6 409 63.3
MD05G1340900 Malus domestica HOM05D004835 ORTHO05D006046 3.9e-131 472.2 380 65.3
FAN25G1333 Fragaria x ananassa HOM05D004835 ORTHO05D006046 5.0e-131 471.9 387 64.3
Lalb_Chr02g0144591 Lupinus albus HOM05D004835 ORTHO05D006046 6.6e-131 471.5 387 64.1
Glyma.10G252300 Glycine max HOM05D004835 ORTHO05D006046 1.1e-130 470.7 388 64.7
Lj5g0006944 Lotus japonicus HOM05D004835 ORTHO05D006046 2.5e-130 469.5 379 64.1
vmacro03709 Vaccinium macrocarpon HOM05D004835 ORTHO05D006046 2.5e-130 469.5 411 60.8
Cfa000278 Carpinus fangiana HOM05D004835 ORTHO05D006046 4.3e-130 468.8 434 59.2
FvH4_3g02680 Fragaria vesca HOM05D004835 ORTHO05D006046 4.3e-130 468.8 385 63.6
SalBow1G4699 Salvia bowleyana HOM05D004835 ORTHO05D006046 4.3e-130 468.8 291 79.0
Lsat_1_v5_gn_7_16981 Lactuca sativa HOM05D004835 ORTHO05D006046 5.6e-130 468.4 413 63.0
Haze_06737 Corylus avellana HOM05D004835 ORTHO05D006046 7.3e-130 468.0 433 59.1
Aqoxy4G01996 Aquilegia oxysepala HOM05D004835 ORTHO05D006046 4.7e-129 465.3 380 66.6
Glyma.20G141100 Glycine max HOM05D004835 ORTHO05D006046 6.2e-129 464.9 388 63.1
PSO675G0743 Papaver somniferum HOM05D004835 ORTHO05D006046 6.2e-129 464.9 410 61.5
MBI02_g10099_MAGBIO Magnolia biondii HOM05D004835 ORTHO05D006046 8.0e-129 464.5 392 64.8
ECA236G4143 Erigeron canadensis HOM05D004835 ORTHO05D006046 1.8e-128 463.4 409 61.9
Rhsim13G0157800 Rhododendron simsii HOM05D004835 ORTHO05D006046 1.8e-128 463.4 403 61.5
DCAR_008123 Daucus carota HOM05D004835 ORTHO05D006046 2.3e-128 463.0 406 62.1
Cpa.g.sc198.3 Carica papaya HOM05D004835 ORTHO05D006046 4.0e-128 462.2 399 61.9
Haze_06733 Corylus avellana HOM05D004835 ORTHO05D006046 5.2e-128 461.8 392 62.5
Cc00_g17920 Coffea canephora HOM05D004835 ORTHO05D006046 6.8e-128 461.5 288 78.5
Gohir.D06G151600 Gossypium hirsutum HOM05D004835 ORTHO05D006046 6.8e-128 461.5 384 64.6
unitig_749.g13624 Utricularia gibba HOM05D004835 ORTHO05D006046 6.8e-128 461.5 377 63.9
Psat6g210360 Pisum sativum HOM05D004835 ORTHO05D006046 8.9e-128 461.1 395 61.0
Sed0001374 Sechium edule HOM05D004835 ORTHO05D006046 8.9e-128 461.1 438 58.0
Ca_10985_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 3.4e-127 459.1 376 63.6
Ca_11005_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 3.4e-127 459.1 376 63.6
SGA_v2.0_scaffold49G18268 Striga asiatica HOM05D004835 ORTHO05D006046 4.4e-127 458.8 293 75.4
Dinv17835 Davidia involucrata HOM05D004835 ORTHO05D006046 5.8e-127 458.4 288 77.4
VMungo0720G3178 Vigna mungo HOM05D004835 ORTHO05D006046 5.8e-127 458.4 368 64.1
Medtr1g105545 Medicago truncatula HOM05D004835 ORTHO05D006046 7.5e-127 458.0 370 64.1
GSVIVG01012626001 Vitis vinifera HOM05D004835 ORTHO05D006046 2.9e-126 456.1 288 76.7
Phvul.007G051900 Phaseolus vulgaris HOM05D004835 ORTHO05D006046 3.7e-126 455.7 368 63.6
Hund21377 Selenicereus undatus HOM05D004835 ORTHO05D006046 8.3e-126 454.5 374 63.6
HanXRQChr05g0130051 Helianthus annuus HOM05D004835 ORTHO05D006046 2.4e-125 453.0 417 59.7
ATR0762G046 Amborella trichopoda HOM05D004835 ORTHO05D006046 5.4e-125 451.8 369 63.1
unitig_26.g9396 Utricularia gibba HOM05D004835 ORTHO05D006046 5.4e-125 451.8 400 61.0
Duzib235G1297 Durio zibethinus HOM05D004835 ORTHO05D006046 7.0e-125 451.4 404 61.6
Migut.H01551 Erythranthe guttata HOM05D004835 ORTHO05D006046 7.0e-125 451.4 426 60.6
HPP92_010092 Vanilla planifolia HOM05D004835 ORTHO05D006046 1.3e-123 447.2 391 60.6
CDE05G0674 Ceratophyllum demersum HOM05D004835 ORTHO05D006046 1.5e-122 443.7 390 60.0
EL10Ac8g19899 Beta vulgaris HOM05D004835 ORTHO05D006046 4.3e-122 442.2 381 61.4
PSO541G2305 Papaver somniferum HOM05D004835 ORTHO05D006046 7.3e-122 441.4 384 62.2
AUR62022016 Chenopodium quinoa HOM05D004835 ORTHO05D006046 2.1e-121 439.9 381 61.2
MSTRG.14649 Avicennia marina HOM05D004835 ORTHO05D006046 1.8e-120 436.8 392 58.9
Ah.09g235350 Amaranthus hybridus HOM05D004835 ORTHO05D006046 5.2e-120 435.3 381 59.6
Os07g0530600 Oryza sativa ssp. japonica HOM05D004835 ORTHO05D006046 2.0e-119 433.3 372 59.7
THA.LOC104821035 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 2.6e-119 433.0 397 58.7
AL7G32900 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 2.9e-118 429.5 385 59.7
Zm00001eb323140 Zea mays HOM05D004835 ORTHO05D006046 1.4e-117 427.2 389 57.1
THA.LOC104812524 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 3.2e-117 426.0 380 59.5
AT4G21210 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 7.1e-117 424.9 383 59.5
Zm00001eb106240 Zea mays HOM05D004835 ORTHO05D006046 1.0e-115 421.0 392 57.4
ECA248G0073 Erigeron canadensis HOM05D004835 ORTHO05D006046 3.0e-115 419.5 368 60.9
BolC1t01464H Brassica oleracea HOM05D004835 ORTHO05D006046 5.1e-115 418.7 394 58.4
CARHR227800 Cardamine hirsuta HOM05D004835 ORTHO05D006046 5.1e-115 418.7 382 58.9
Carub.0007s2021 Capsella rubella HOM05D004835 ORTHO05D006046 6.6e-115 418.3 399 57.6
A01p12580 Brassica napus HOM05D004835 ORTHO05D006046 1.5e-114 417.2 397 57.7
C01p15150 Brassica napus HOM05D004835 ORTHO05D006046 1.5e-114 417.2 394 58.1
Thhalv10025354m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 1.5e-114 417.2 399 58.4
Cpa.g.sc198.4 Carica papaya HOM05D004835 ORTHO05D006046 4.3e-114 415.6 288 72.6
Lsat_1_v5_gn_1_125320 Lactuca sativa HOM05D004835 ORTHO05D006046 4.3e-114 415.6 396 58.6
Sc05g0008870 Simmondsia chinensis HOM05D004835 ORTHO05D006046 5.6e-114 415.2 381 58.8
BraA01t01201Z Brassica rapa HOM05D004835 ORTHO05D006046 7.3e-114 414.8 397 57.7
Sp7g19300 Schrenkiella parvula HOM05D004835 ORTHO05D006046 7.3e-114 414.8 402 57.5
BcaC09g51244 Brassica carinata HOM05D004835 ORTHO05D006046 9.5e-114 414.5 394 58.1
BcaNung03833 Brassica carinata HOM05D004835 ORTHO05D006046 1.6e-113 413.7 418 55.7
Aa31LG6G3230 Aethionema arabicum HOM05D004835 ORTHO05D006046 2.1e-113 413.3 392 57.7
HanXRQChr01g0002521 Helianthus annuus HOM05D004835 ORTHO05D006046 2.6e-111 406.4 385 57.7
Carub.0003s0094 Capsella rubella HOM05D004835 ORTHO05D006046 7.6e-111 404.8 400 56.2
Nn1g03640 Nelumbo nucifera HOM05D004835 ORTHO05D006046 2.2e-110 403.3 361 60.4
Sp3g00900 Schrenkiella parvula HOM05D004835 ORTHO05D006046 2.4e-109 399.8 386 56.2
HPP92_010083 Vanilla planifolia HOM05D004835 ORTHO05D006046 9.2e-109 397.9 508 46.7
Thhalv10020923m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 3.5e-108 396.0 400 56.8
Hund23515 Selenicereus undatus HOM05D004835 ORTHO05D006046 7.8e-108 394.8 367 59.7
AT3G01200 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 1.7e-107 393.7 398 56.5
AL3G11040 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 3.9e-107 392.5 394 56.1
CARHR075840 Cardamine hirsuta HOM05D004835 ORTHO05D006046 1.9e-106 390.2 366 57.4
BraA01t04644Z Brassica rapa HOM05D004835 ORTHO05D006046 5.6e-106 388.7 387 56.3
Mapoly0141s0024 Marchantia polymorpha HOM05D004835 ORTHO05D006046 1.6e-105 387.1 398 53.3
BNapus_Darmor_BZH_scaffold_113p00010 Brassica napus HOM05D004835 ORTHO05D006046 2.1e-105 386.7 387 56.1
Lj2A274G58 Lonicera japonica HOM05D004835 ORTHO05D006046 2.1e-105 386.7 380 57.4
Pp3c11_19190 Physcomitrium patens HOM05D004835 ORTHO05D006046 2.8e-105 386.3 369 53.4
BNapus_Darmor_BZH_scaffold_97p00190 Brassica napus HOM05D004835 ORTHO05D006046 6.2e-105 385.2 387 56.1
BcaC05g30485 Brassica carinata HOM05D004835 ORTHO05D006046 1.4e-104 384.0 384 56.0
BolC1t05939H Brassica oleracea HOM05D004835 ORTHO05D006046 1.5e-103 380.6 398 54.0
SMO147G0180 Selaginella moellendorffii HOM05D004835 ORTHO05D006046 2.6e-103 379.8 289 61.2
BcaB04g21426 Brassica carinata HOM05D004835 ORTHO05D006046 9.9e-103 377.9 387 54.5
SEGI_26962 Sequoiadendron giganteum HOM05D004835 ORTHO05D006046 2.2e-102 376.7 286 64.0
BcaC09g47670 Brassica carinata HOM05D004835 ORTHO05D006046 2.9e-102 376.3 382 54.7
C09p75340 Brassica napus HOM05D004835 ORTHO05D006046 2.9e-102 376.3 388 55.4
BolC5t35125H Brassica oleracea HOM05D004835 ORTHO05D006046 2.9e-102 376.3 388 55.4
A05p44760 Brassica napus HOM05D004835 ORTHO05D006046 8.4e-102 374.8 388 55.4
BraA05t23181Z Brassica rapa HOM05D004835 ORTHO05D006046 8.4e-102 374.8 388 55.4
FAN21G1397 Fragaria x ananassa HOM05D004835 ORTHO05D006046 3.2e-101 372.9 288 67.4
BcaC05g30395 Brassica carinata HOM05D004835 ORTHO05D006046 5.4e-101 372.1 388 54.9
TPR.G5518 Trifolium pratense HOM05D004835 ORTHO05D006046 1.6e-97 360.5 370 54.3
CSS0001434 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 3.5e-92 342.8 303 61.4
CBR_g38977 Chara braunii HOM05D004835 ORTHO05D006046 2.1e-89 333.6 412 47.1
Aa31LG5G12420 Aethionema arabicum HOM05D004835 ORTHO05D006046 1.8e-88 330.5 252 67.5
AagrBONN_evm.TU.Sc2ySwM_368.2632 Anthoceros agrestis HOM05D004835 ORTHO05D006046 2.2e-86 323.6 363 48.8
Dinv20014 Davidia involucrata HOM05D004835 ORTHO05D006046 1.6e-65 254.2 162 75.3
Cre12.g514600 Chlamydomonas reinhardtii HOM05D004835 ORTHO05D006046 3.0e-59 233.4 285 43.9
BolC1t05935H Brassica oleracea HOM05D004835 ORTHO05D006046 2.2e-54 217.2 172 65.1
MCO14G521 Micromonas commoda HOM05D004835 ORTHO05D006046 6.5e-54 215.7 292 43.2
BNapus_Darmor_BZH_scaffold_97p00140 Brassica napus HOM05D004835 ORTHO05D006046 7.2e-53 212.2 161 67.1
TPR.G4570 Trifolium pratense HOM05D004835 ORTHO05D006046 1.0e-46 191.8 259 43.6
MD10G1314400 Malus domestica HOM05D004835 ORTHO05D006046 1.3e-38 164.9 249 41.8
BolC1t05929H Brassica oleracea HOM05D004835 ORTHO05D006046 5.5e-29 132.9 199 41.7
Dinv20013 Davidia involucrata HOM05D004835 ORTHO05D006046 1.3e-25 121.7 72 75.0
CANSAT64G1413 Cannabis sativa HOM05D004835 ORTHO05D006046 5.9e-23 112.8 177 43.5
Actinidia05534 Actinidia chinensis HOM05D000018 ORTHO05D001766 4.4e-18 96.7 113 48.7
Ca_29404_v3 Cicer arietinum L. HOM05D004835 ORTHO05D148401 1.3e-17 95.1 278 29.1
BolC5t35131H Brassica oleracea HOM05D004835 ORTHO05D038187 4.3e-13 80.1 60 61.7
Aa31LG5G12410 Aethionema arabicum HOM05D004835 ORTHO05D038187 1.1e-11 75.5 153 37.3
QL10p027838 Quercus lobata HOM05D004835 ORTHO05D337120 4.1e-08 63.5 130 33.8


User provided reference genes

Program Settings