Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1046.1 Capsicum annuum HOM05D005390 ORTHO05D007086 1.6e-297 1025.4 553 100.0
Sopen06g028130 Solanum pennellii HOM05D005390 ORTHO05D007086 2.4e-280 968.4 554 89.9
PGSC0003DMG400027069 Solanum tuberosum HOM05D005390 ORTHO05D007086 6.9e-280 966.8 554 90.1
Solyc06g071850.3 Solanum lycopersicum HOM05D005390 ORTHO05D007086 4.6e-276 954.1 554 89.0
Nitab4.5_0014349g0010 Nicotiana tabacum HOM05D005390 ORTHO05D007086 6.7e-267 923.7 548 86.9
Peaxi162Scf00763g00330 Petunia axillaris HOM05D005390 ORTHO05D007086 1.4e-264 916.0 554 85.7
Nitab4.5_0000003g0930 Nicotiana tabacum HOM05D005390 ORTHO05D007086 1.1e-261 906.4 554 85.6
Rhsim08G0183100 Rhododendron simsii HOM05D005390 ORTHO05D007086 3.0e-227 792.0 545 73.4
Lj9C473T10 Lonicera japonica HOM05D005390 ORTHO05D007086 1.2e-226 790.0 548 78.5
Dinv38486 Davidia involucrata HOM05D005390 ORTHO05D007086 4.8e-225 784.6 529 74.9
Oeu011587.1 Olea europaea HOM05D005390 ORTHO05D007086 4.8e-225 784.6 541 73.9
Cc04_g10660 Coffea canephora HOM05D005390 ORTHO05D007086 1.7e-222 776.2 548 70.8
Hma1.2p1_0983F.1_g244080 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 5.0e-222 774.6 540 73.5
Actinidia19375 Actinidia chinensis HOM05D005390 ORTHO05D007086 3.6e-220 768.5 549 76.1
HanXRQChr09g0272781 Helianthus annuus HOM05D005390 ORTHO05D007086 4.8e-217 758.1 549 69.8
CANSAT80G2255 Cannabis sativa HOM05D005390 ORTHO05D007086 7.0e-216 754.2 551 74.2
vmacro19255 Vaccinium macrocarpon HOM05D005390 ORTHO05D007086 7.0e-216 754.2 594 67.2
SGA_v2.0_scaffold25G10792 Striga asiatica HOM05D005390 ORTHO05D007086 1.2e-215 753.4 544 73.3
DCAR_016426 Daucus carota HOM05D005390 ORTHO05D007086 1.6e-215 753.1 546 70.9
ECA232G3921 Erigeron canadensis HOM05D005390 ORTHO05D007086 1.3e-214 750.0 546 74.0
Lsat_1_v5_gn_4_78320 Lactuca sativa HOM05D005390 ORTHO05D007086 2.3e-214 749.2 550 74.5
QL10p005602 Quercus lobata HOM05D005390 ORTHO05D007086 2.3e-214 749.2 543 75.3
Cfa018904 Carpinus fangiana HOM05D005390 ORTHO05D007086 2.5e-213 745.7 543 70.7
MSTRG.11518 Avicennia marina HOM05D005390 ORTHO05D007086 3.3e-213 745.3 541 74.9
GSVIVG01007574001 Vitis vinifera HOM05D005390 ORTHO05D007086 5.5e-213 744.6 546 73.8
TWI09G0451 Tripterygium wilfordii HOM05D005390 ORTHO05D007086 2.1e-212 742.7 534 70.2
TWI39G0214 Tripterygium wilfordii HOM05D005390 ORTHO05D007086 1.8e-211 739.6 534 69.9
Thecc.03G120800 Theobroma cacao HOM05D005390 ORTHO05D007086 4.0e-211 738.4 541 74.7
Prupe.5G160000 Prunus persica HOM05D005390 ORTHO05D007086 6.3e-209 731.1 542 74.0
Nn4g22507 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.1e-208 730.3 548 72.4
Haze_07289 Corylus avellana HOM05D005390 ORTHO05D007086 2.7e-207 725.7 586 65.9
TAR374G1738 Trochodendron aralioides HOM05D005390 ORTHO05D007086 3.5e-207 725.3 531 69.3
MD06G1160400 Malus domestica HOM05D005390 ORTHO05D007086 1.7e-206 723.0 543 73.3
Manes.06G113700 Manihot esculenta HOM05D005390 ORTHO05D007086 8.6e-206 720.7 545 73.2
FAN13G2995 Fragaria x ananassa HOM05D005390 ORTHO05D007086 3.3e-205 718.8 539 72.4
Duzib205G1771 Durio zibethinus HOM05D005390 ORTHO05D007086 6.1e-204 714.5 544 73.2
Gohir.A12G187300 Gossypium hirsutum HOM05D005390 ORTHO05D007086 8.0e-204 714.1 542 72.5
Gorai.008G204100 Gossypium raimondii HOM05D005390 ORTHO05D007086 2.3e-203 712.6 542 72.1
FAN18G2367 Fragaria x ananassa HOM05D005390 ORTHO05D007086 5.2e-203 711.4 544 72.2
Glyma.06G174300 Glycine max HOM05D005390 ORTHO05D007086 5.2e-203 711.4 533 72.4
Gohir.D12G190300 Gossypium hirsutum HOM05D005390 ORTHO05D007086 1.2e-202 710.3 542 72.1
Glyma.04G191600 Glycine max HOM05D005390 ORTHO05D007086 1.5e-202 709.9 543 67.2
Phvul.009G170000 Phaseolus vulgaris HOM05D005390 ORTHO05D007086 2.6e-202 709.1 542 67.2
Ca_16101_v3 Cicer arietinum L. HOM05D005390 ORTHO05D007086 5.8e-202 708.0 549 65.9
Ca_30077_v3 Cicer arietinum L. HOM05D005390 ORTHO05D007086 5.8e-202 708.0 549 65.9
AUR62025748 Chenopodium quinoa HOM05D005390 ORTHO05D007086 3.2e-200 702.2 553 69.6
Medtr3g075240 Medicago truncatula HOM05D005390 ORTHO05D007086 2.7e-199 699.1 546 65.6
RcHm_v2.0_Chr7g0191501 Rosa chinensis HOM05D005390 ORTHO05D007086 3.5e-199 698.7 539 72.4
EL10Ac7g18053 Beta vulgaris HOM05D005390 ORTHO05D007086 3.0e-198 695.7 565 68.0
Psat5g139480 Pisum sativum HOM05D005390 ORTHO05D007086 3.9e-198 695.3 543 65.4
PGR083G1300 Punica granatum HOM05D005390 ORTHO05D007086 6.6e-198 694.5 543 65.4
Aqoxy3G01354 Aquilegia oxysepala HOM05D005390 ORTHO05D007086 8.6e-198 694.1 546 64.8
Lj1g0026120 Lotus japonicus HOM05D005390 ORTHO05D007086 1.1e-197 693.7 540 70.0
FAN08G1670 Fragaria x ananassa HOM05D005390 ORTHO05D007086 5.6e-197 691.4 543 70.9
ClCG03G003390 Citrullus lanatus HOM05D005390 ORTHO05D007086 1.4e-195 686.8 531 69.3
Eucgr.B00166 Eucalyptus grandis HOM05D005390 ORTHO05D007086 1.4e-195 686.8 553 63.7
Lalb_Chr11g0069761 Lupinus albus HOM05D005390 ORTHO05D007086 3.1e-195 685.6 491 69.7
CsaV3_1G009190 Cucumis sativus L. HOM05D005390 ORTHO05D007086 4.0e-195 685.3 531 68.5
arahy.Tifrunner.gnm1.ann1.EKVH9G Arachis hypogaea HOM05D005390 ORTHO05D007086 5.2e-195 684.9 503 67.6
AL8G40290 Arabidopsis lyrata HOM05D005390 ORTHO05D007086 8.9e-195 684.1 543 67.2
unitig_22.g5443 Utricularia gibba HOM05D005390 ORTHO05D007086 4.4e-194 681.8 541 69.9
TPR.G38664 Trifolium pratense HOM05D005390 ORTHO05D007086 7.5e-194 681.0 574 61.8
PSO017G5335 Papaver somniferum HOM05D005390 ORTHO05D007086 1.7e-193 679.9 546 65.0
Sp2g26330 Schrenkiella parvula HOM05D005390 ORTHO05D007086 3.7e-193 678.7 543 64.5
Carub.0008s2396 Capsella rubella HOM05D005390 ORTHO05D007086 9.2e-192 674.1 543 65.9
Aa31LG1G18770 Aethionema arabicum HOM05D005390 ORTHO05D007086 6.0e-191 671.4 543 66.5
PSO478G4661 Papaver somniferum HOM05D005390 ORTHO05D007086 2.3e-190 669.5 546 64.1
THA.LOC104818200 Tarenaya hassleriana HOM05D005390 ORTHO05D007086 6.6e-190 667.9 550 67.5
Sed0027546 Sechium edule HOM05D005390 ORTHO05D007086 1.1e-189 667.2 507 70.0
Cpa.g.sc4.44 Carica papaya HOM05D005390 ORTHO05D007086 7.3e-189 664.5 534 68.7
Thhalv10003779m.g Eutrema salsugineum HOM05D005390 ORTHO05D007086 2.8e-188 662.5 542 65.9
Potri.012G092000 Populus trichocarpa HOM05D005390 ORTHO05D007086 1.1e-181 640.6 548 65.0
Sabra12G0066700 Salix brachista HOM05D005390 ORTHO05D007086 1.1e-181 640.6 531 66.1
Ciclev10019194m.g Citrus clementina HOM05D005390 ORTHO05D007086 1.5e-181 640.2 535 62.8
COL.COLO4_04551 Corchorus olitorius HOM05D005390 ORTHO05D007086 7.3e-181 637.9 531 68.0
AUR62001260 Chenopodium quinoa HOM05D005390 ORTHO05D007086 1.1e-179 634.0 533 66.8
AT5G63200 Arabidopsis thaliana HOM05D005390 ORTHO05D007086 5.2e-179 631.7 543 63.9
Hund05621 Selenicereus undatus HOM05D005390 ORTHO05D007086 4.6e-175 618.6 548 65.0
ATR0824G019 Amborella trichopoda HOM05D005390 ORTHO05D007086 3.1e-171 605.9 546 57.9
BolC9t53836H Brassica oleracea HOM05D005390 ORTHO05D007086 3.1e-171 605.9 544 62.1
C09p09230 Brassica napus HOM05D005390 ORTHO05D007086 9.0e-171 604.4 544 61.9
Atru.BG.198.p Acer truncatum HOM05D005390 ORTHO05D007086 8.4e-169 597.8 504 65.7
SEGI_06673 Sequoiadendron giganteum HOM05D005390 ORTHO05D007086 1.7e-166 590.1 535 57.9
A09p08180 Brassica napus HOM05D005390 ORTHO05D007086 4.3e-165 585.5 543 60.6
BraA09t36469Z Brassica rapa HOM05D005390 ORTHO05D007086 1.6e-164 583.6 543 60.0
CSS0013940 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 2.4e-163 579.7 386 75.1
Zm00001eb144210 Zea mays HOM05D005390 ORTHO05D007086 9.0e-163 577.8 526 56.8
MELO3C002325.2 Cucumis melo HOM05D005390 ORTHO05D007086 1.5e-162 577.0 536 61.6
Os01g0906600 Oryza sativa ssp. japonica HOM05D005390 ORTHO05D007086 2.8e-156 556.2 526 60.1
FvH4_5g07030 Fragaria vesca HOM05D005390 ORTHO05D007086 1.1e-149 534.3 386 69.2
Sc22g0003910 Simmondsia chinensis HOM05D005390 ORTHO05D007086 2.4e-147 526.6 385 68.6
Nn1g05493 Nelumbo nucifera HOM05D005390 ORTHO05D007086 6.7e-142 508.4 451 60.3
SMO356G0210 Selaginella moellendorffii HOM05D005390 ORTHO05D007086 1.4e-139 500.7 537 54.4
Migut.O00224 Erythranthe guttata HOM05D005390 ORTHO05D007086 1.7e-137 493.8 543 53.8
HPP92_001962 Vanilla planifolia HOM05D005390 ORTHO05D007086 1.9e-136 490.3 476 54.2
FAN04G1107 Fragaria x ananassa HOM05D005390 ORTHO05D007086 5.3e-131 472.2 360 74.2
Mapoly0013s0178 Marchantia polymorpha HOM05D005390 ORTHO05D007086 3.4e-130 469.5 536 51.3
AagrBONN_evm.TU.Sc2ySwM_228.344 Anthoceros agrestis HOM05D005390 ORTHO05D007086 1.3e-129 467.6 545 48.8
arahy.Tifrunner.gnm1.ann1.V8X883 Arachis hypogaea HOM05D005390 ORTHO05D007086 5.5e-128 462.2 541 52.7
Nn8g39688 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.1e-125 454.5 334 67.7
Oeu053506.1 Olea europaea HOM05D005390 ORTHO05D007086 1.1e-125 454.5 314 73.9
SalBow5G1843 Salvia bowleyana HOM05D005390 ORTHO05D007086 3.7e-124 449.5 500 57.0
VMungo1309G2389 Vigna mungo HOM05D005390 ORTHO05D007086 4.7e-119 432.6 349 63.6
Nn7g37481 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.5e-117 427.6 325 66.8
CiPaw.12G034400 Carya illinoinensis HOM05D005390 ORTHO05D007086 1.9e-112 410.6 297 70.0
Nn5g27251 Nelumbo nucifera HOM05D005390 ORTHO05D007086 9.5e-88 328.6 439 44.2
Nn8g40909 Nelumbo nucifera HOM05D005390 ORTHO05D007086 4.3e-80 303.1 206 70.9
MBI11_g46067_MAGBIO Magnolia biondii HOM05D005390 ORTHO05D007086 5.8e-77 292.7 222 67.1
Nn5g28724 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.5e-72 277.3 206 67.0
Nn1g08373 Nelumbo nucifera HOM05D005390 ORTHO05D007086 9.9e-69 265.4 190 66.3
VMungo1309G0829 Vigna mungo HOM05D005390 ORTHO05D007086 2.9e-68 263.8 187 70.6
Nn2g15275 Nelumbo nucifera HOM05D005390 ORTHO05D007086 6.0e-66 256.1 211 61.6
MBI11_g46351_MAGBIO Magnolia biondii HOM05D005390 ORTHO05D007086 1.7e-60 238.0 185 66.5
CiPaw.12G034500 Carya illinoinensis HOM05D005390 ORTHO05D007086 2.9e-60 237.3 192 77.1
CDE06G0744 Ceratophyllum demersum HOM05D005390 ORTHO05D007086 2.1e-55 221.1 174 64.9
CsaV3_3G015420 Cucumis sativus L. HOM05D005390 ORTHO05D007086 1.1e-54 218.8 351 39.6
CSS0032502 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 9.3e-51 205.7 161 80.7
CSS0049807 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 1.2e-50 205.3 161 80.7
Hma1.2p1_2683F.1_g326880 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 4.8e-47 193.4 164 63.4
Nn8g40618 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.4e-43 181.8 123 68.3
CARHR277060 Cardamine hirsuta HOM05D005390 ORTHO05D007086 2.4e-43 181.0 159 71.1
Hma1.2p1_2683F.1_g326890 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 4.3e-40 170.2 153 58.2
CAN.G1302.1 Capsicum annuum HOM05D005390 ORTHO05D002902 1.1e-38 165.6 307 39.7
RcHm_v2.0_Chr5g0027631 Rosa chinensis HOM05D005390 ORTHO05D007086 7.4e-32 142.9 169 52.1
CsaV3_3G015410 Cucumis sativus L. HOM05D005390 ORTHO05D007086 2.1e-31 141.4 126 58.7
Nn6g32370 Nelumbo nucifera HOM05D005390 ORTHO05D007086 9.0e-30 136.0 101 60.4
Nn1g03252 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.0e-29 134.8 92 67.4
CAN.G534.23 Capsicum annuum HOM05D005390 ORTHO05D007086 6.5e-28 129.8 71 87.3
Nn1g06247 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.6e-26 125.2 97 60.8
Psat7g117320 Pisum sativum HOM05D005390 ORTHO05D004709 5.7e-24 116.7 92 64.1
Nn5g26726 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.8e-23 114.4 80 68.8
CAN.G755.13 Capsicum annuum HOM05D005390 ORTHO05D007086 7.7e-21 106.3 89 66.3
CARHR043650 Cardamine hirsuta HOM05D005390 ORTHO05D007086 1.7e-20 105.1 81 66.7
CDE06G2390 Ceratophyllum demersum HOM05D005390 ORTHO05D007086 6.5e-20 103.2 107 54.2
Nn2g14552 Nelumbo nucifera HOM05D005390 ORTHO05D028071 3.2e-19 100.9 63 73.0
Nn1g06248 Nelumbo nucifera HOM05D005390 ORTHO05D007086 7.9e-18 96.3 67 68.7
RcHm_v2.0_Chr5g0027621 Rosa chinensis HOM05D005390 ORTHO05D007086 1.1e-16 92.4 82 53.7
TAR381G0053 Trochodendron aralioides HOM05D000018 ORTHO05D001172 1.6e-10 72.0 58 60.3
CAN.G254.1 Capsicum annuum HOM05D003813 ORTHO05D004557 2.7e-10 71.2 39 79.5
A06p18430 Brassica napus HOM05D005390 ORTHO05D028071 7.9e-10 69.7 46 65.2
A09p53940 Brassica napus HOM05D005390 ORTHO05D028071 3.0e-09 67.8 46 63.0
BraA09t40810Z Brassica rapa HOM05D005390 ORTHO05D028071 3.0e-09 67.8 46 63.0


User provided reference genes

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