Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1041.6 Capsicum annuum HOM05D003855 ORTHO05D004722 9.8e-247 856.3 413 100.0
PGSC0003DMG400025820 Solanum tuberosum HOM05D003855 ORTHO05D004722 1.3e-174 616.7 399 78.7
Sopen01g050820 Solanum pennellii HOM05D003855 ORTHO05D004722 1.1e-173 613.6 399 78.4
Solyc01g108600.3 Solanum lycopersicum HOM05D003855 ORTHO05D004722 2.5e-173 612.5 399 78.2
Nitab4.5_0001899g0100 Nicotiana tabacum HOM05D003855 ORTHO05D004722 1.9e-170 602.8 399 77.2
Peaxi162Scf00016g01731 Petunia axillaris HOM05D003855 ORTHO05D004722 1.4e-165 586.6 399 74.9
Nitab4.5_0002097g0080 Nicotiana tabacum HOM05D003855 ORTHO05D004722 1.7e-153 546.6 399 71.9
Dinv42141 Davidia involucrata HOM05D003855 ORTHO05D004722 1.7e-145 520.0 411 67.9
Dinv23608 Davidia involucrata HOM05D003855 ORTHO05D004722 1.1e-144 517.3 407 67.8
Migut.B00330 Erythranthe guttata HOM05D003855 ORTHO05D004722 1.2e-143 513.8 409 65.3
SalBow6G4323 Salvia bowleyana HOM05D003855 ORTHO05D004722 5.9e-143 511.5 407 66.8
DCAR_029027 Daucus carota HOM05D003855 ORTHO05D004722 3.8e-142 508.8 402 68.2
vmacro02191 Vaccinium macrocarpon HOM05D003855 ORTHO05D004722 3.8e-142 508.8 407 65.6
CSS0001000 Camellia sinensis var. sinensis HOM05D003855 ORTHO05D004722 5.5e-141 505.0 405 65.7
Rhsim11G0167000 Rhododendron simsii HOM05D003855 ORTHO05D004722 9.4e-141 504.2 407 65.1
SGA_v2.0_scaffold32G13071 Striga asiatica HOM05D003855 ORTHO05D004722 1.6e-140 503.4 405 65.2
GSVIVG01031766001 Vitis vinifera HOM05D003855 ORTHO05D004722 1.8e-139 500.0 408 65.2
Oeu007277.1 Olea europaea HOM05D003855 ORTHO05D004722 3.0e-139 499.2 410 65.6
MSTRG.16753 Avicennia marina HOM05D003855 ORTHO05D004722 5.7e-138 495.0 406 65.0
Lsat_1_v5_gn_5_112961 Lactuca sativa HOM05D003855 ORTHO05D004722 4.8e-137 491.9 403 64.0
Cfa005469 Carpinus fangiana HOM05D003855 ORTHO05D004722 6.3e-137 491.5 405 64.0
Gorai.012G150300 Gossypium raimondii HOM05D003855 ORTHO05D004722 5.9e-135 485.0 417 63.3
Ciclev10027722m.g Citrus clementina HOM05D003855 ORTHO05D004722 7.7e-135 484.6 411 63.7
Nn5g30224 Nelumbo nucifera HOM05D003855 ORTHO05D004722 1.0e-134 484.2 408 63.5
ECA234G3461 Erigeron canadensis HOM05D003855 ORTHO05D004722 1.3e-134 483.8 402 65.2
Actinidia00452 Actinidia chinensis HOM05D003855 ORTHO05D004722 2.2e-134 483.0 389 65.3
CiPaw.05G052400 Carya illinoinensis HOM05D003855 ORTHO05D004722 5.0e-134 481.9 413 62.2
Gohir.D04G162300 Gossypium hirsutum HOM05D003855 ORTHO05D004722 1.1e-133 480.7 417 62.8
Cc02_g18640 Coffea canephora HOM05D003855 ORTHO05D004722 3.2e-133 479.2 399 61.9
Gohir.A04G120800 Gossypium hirsutum HOM05D003855 ORTHO05D004722 4.2e-133 478.8 417 62.6
Duzib052G0714 Durio zibethinus HOM05D003855 ORTHO05D004722 7.2e-133 478.0 412 62.1
FAN15G0137 Fragaria x ananassa HOM05D003855 ORTHO05D004722 7.2e-133 478.0 403 63.3
MELO3C018441.2 Cucumis melo HOM05D003855 ORTHO05D004722 4.7e-132 475.3 412 61.7
QL11p036227 Quercus lobata HOM05D003855 ORTHO05D004722 4.7e-132 475.3 411 62.5
MD11G1150900 Malus domestica HOM05D003855 ORTHO05D004722 8.0e-132 474.6 409 62.3
CsaV3_7G008690 Cucumis sativus L. HOM05D003855 ORTHO05D004722 5.2e-131 471.9 411 61.3
HanXRQChr10g0301751 Helianthus annuus HOM05D003855 ORTHO05D004722 6.8e-131 471.5 404 62.9
Atru.chr5.2746 Acer truncatum HOM05D003855 ORTHO05D004722 2.0e-130 469.9 396 62.6
Cpa.g.sc62.29 Carica papaya HOM05D003855 ORTHO05D004722 2.0e-130 469.9 413 61.7
FvH4_2g06380 Fragaria vesca HOM05D003855 ORTHO05D004722 2.6e-130 469.5 402 61.9
Prupe.8G122100 Prunus persica HOM05D003855 ORTHO05D004722 3.4e-130 469.2 413 61.0
Sed0020763 Sechium edule HOM05D003855 ORTHO05D004722 3.4e-130 469.2 411 61.6
Thecc.02G098600 Theobroma cacao HOM05D003855 ORTHO05D004722 7.5e-130 468.0 414 62.3
TAR381G1366 Trochodendron aralioides HOM05D003855 ORTHO05D004722 7.5e-130 468.0 412 61.2
PGR042G3302 Punica granatum HOM05D003855 ORTHO05D004722 1.3e-129 467.2 407 61.2
AUR62011441 Chenopodium quinoa HOM05D003855 ORTHO05D004722 1.7e-129 466.8 413 61.5
Manes.10G066200 Manihot esculenta HOM05D003855 ORTHO05D004722 3.7e-129 465.7 412 60.7
COL.COLO4_32675 Corchorus olitorius HOM05D003855 ORTHO05D004722 8.3e-129 464.5 415 61.9
TWI79G1596 Tripterygium wilfordii HOM05D003855 ORTHO05D004722 8.3e-129 464.5 417 60.7
ClCG02G005810 Citrullus lanatus HOM05D003855 ORTHO05D004722 1.4e-128 463.8 411 60.1
Aqoxy6G01362 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 2.4e-128 463.0 413 59.8
Ah.01g020190 Amaranthus hybridus HOM05D003855 ORTHO05D004722 4.1e-128 462.2 337 69.1
MBI06_g04502_MAGBIO Magnolia biondii HOM05D003855 ORTHO05D004722 2.0e-127 459.9 410 60.2
Sc08g0000010 Simmondsia chinensis HOM05D003855 ORTHO05D004722 3.5e-127 459.1 410 60.5
RcHm_v2.0_Chr6g0258261 Rosa chinensis HOM05D003855 ORTHO05D004722 7.7e-127 458.0 413 59.3
ATR0100G044 Amborella trichopoda HOM05D003855 ORTHO05D004722 8.6e-126 454.5 404 60.4
SGA_v2.0_scaffold90G27671 Striga asiatica HOM05D003855 ORTHO05D004722 8.6e-126 454.5 407 60.9
Potri.004G142300 Populus trichocarpa HOM05D003855 ORTHO05D004722 4.3e-125 452.2 417 60.2
Sabra04G0094100 Salix brachista HOM05D003855 ORTHO05D004722 5.6e-125 451.8 335 68.1
unitig_21.g20751 Utricularia gibba HOM05D003855 ORTHO05D004722 5.6e-125 451.8 402 60.7
Eucgr.G01465 Eucalyptus grandis HOM05D003855 ORTHO05D004722 9.5e-125 451.1 422 58.8
THA.LOC104801598 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 1.0e-123 447.6 413 60.3
Lj1g0003010 Lotus japonicus HOM05D003855 ORTHO05D004722 1.4e-123 447.2 353 64.6
Thhalv10019955m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 1.8e-123 446.8 401 61.6
Ca_24336_v3 Cicer arietinum L. HOM05D003855 ORTHO05D004722 3.0e-123 446.0 413 59.3
Hund00328 Selenicereus undatus HOM05D003855 ORTHO05D004722 6.8e-123 444.9 411 58.2
Medtr5g004680 Medicago truncatula HOM05D003855 ORTHO05D004722 1.5e-122 443.7 403 61.3
PSO675G1899 Papaver somniferum HOM05D003855 ORTHO05D004722 1.5e-122 443.7 420 57.6
Lalb_Chr16g0376231 Lupinus albus HOM05D003855 ORTHO05D004722 3.4e-122 442.6 333 66.4
CDE10G0143 Ceratophyllum demersum HOM05D003855 ORTHO05D004722 4.4e-122 442.2 410 60.0
Aa31LG8G5960 Aethionema arabicum HOM05D003855 ORTHO05D004722 5.7e-122 441.8 401 60.8
Carub.0001s3883 Capsella rubella HOM05D003855 ORTHO05D004722 5.7e-122 441.8 408 58.6
Potri.009G103700 Populus trichocarpa HOM05D003855 ORTHO05D004722 5.7e-122 441.8 419 59.2
EL10Ac9g21832 Beta vulgaris HOM05D003855 ORTHO05D004722 7.5e-122 441.4 413 60.0
Sabra09G0079400 Salix brachista HOM05D003855 ORTHO05D004722 1.3e-121 440.7 414 58.7
AT3G19170 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 1.7e-121 440.3 398 60.6
Haze_01842 Corylus avellana HOM05D003855 ORTHO05D004722 1.7e-121 440.3 406 59.4
PSO541G0814 Papaver somniferum HOM05D003855 ORTHO05D004722 2.2e-121 439.9 418 57.4
Phvul.002G054400 Phaseolus vulgaris HOM05D003855 ORTHO05D004722 2.2e-121 439.9 405 58.0
AL3G32540 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 2.9e-121 439.5 391 61.1
Haze_01847 Corylus avellana HOM05D003855 ORTHO05D004722 3.7e-121 439.1 406 59.1
Sp3g17240 Schrenkiella parvula HOM05D003855 ORTHO05D004722 3.7e-121 439.1 397 61.0
BcaC01g03642 Brassica carinata HOM05D003855 ORTHO05D004722 8.3e-121 438.0 400 60.0
Carub.0003s1899 Capsella rubella HOM05D003855 ORTHO05D004722 8.3e-121 438.0 403 60.3
BcaB04g19030 Brassica carinata HOM05D003855 ORTHO05D004722 1.1e-120 437.6 400 59.8
AT1G49630 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 1.8e-120 436.8 410 57.8
THA.LOC104818544 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 3.2e-120 436.0 407 59.5
VMungo1215G1975 Vigna mungo HOM05D003855 ORTHO05D004722 3.2e-120 436.0 406 57.6
Psat4g213560 Pisum sativum HOM05D003855 ORTHO05D004722 4.1e-120 435.6 399 60.2
BraA01t03617Z Brassica rapa HOM05D003855 ORTHO05D004722 9.2e-120 434.5 405 58.5
FAN20G0084 Fragaria x ananassa HOM05D003855 ORTHO05D004722 1.6e-119 433.7 488 52.7
CARHR094570 Cardamine hirsuta HOM05D003855 ORTHO05D004722 3.5e-119 432.6 401 60.3
A03p41100 Brassica napus HOM05D003855 ORTHO05D004722 7.8e-119 431.4 400 59.5
C03p50190 Brassica napus HOM05D003855 ORTHO05D004722 7.8e-119 431.4 400 59.5
C01p44870 Brassica napus HOM05D003855 ORTHO05D004722 1.0e-118 431.0 407 58.7
BolC1t04455H Brassica oleracea HOM05D003855 ORTHO05D004722 1.0e-118 431.0 407 58.7
BolC3t17311H Brassica oleracea HOM05D003855 ORTHO05D004722 1.7e-118 430.3 400 59.2
BraA03t13267Z Brassica rapa HOM05D003855 ORTHO05D004722 1.7e-118 430.3 400 59.2
Thhalv10011199m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 2.3e-118 429.9 406 58.4
Zm00001eb255690 Zea mays HOM05D003855 ORTHO05D004722 2.3e-118 429.9 332 66.3
FAN27G3432 Fragaria x ananassa HOM05D003855 ORTHO05D004722 6.6e-118 428.3 406 58.9
Sp1g36500 Schrenkiella parvula HOM05D003855 ORTHO05D004722 1.5e-117 427.2 408 57.8
AL1G57020 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 1.9e-117 426.8 407 57.5
Pp3c5_3160 Physcomitrium patens HOM05D003855 ORTHO05D004722 1.9e-117 426.8 330 63.6
BcaB07g33638 Brassica carinata HOM05D003855 ORTHO05D004722 7.3e-117 424.9 395 58.5
Ciclev10029929m.g Citrus clementina HOM05D003855 ORTHO05D004722 7.3e-117 424.9 382 62.0
A01p35360 Brassica napus HOM05D003855 ORTHO05D004722 9.5e-117 424.5 405 57.3
Glyma.01G244900 Glycine max HOM05D003855 ORTHO05D004722 1.6e-116 423.7 445 54.2
A06p03570 Brassica napus HOM05D003855 ORTHO05D004722 3.6e-116 422.5 398 58.5
Aa31LG10G4390 Aethionema arabicum HOM05D003855 ORTHO05D004722 1.4e-115 420.6 358 61.7
C06p04590 Brassica napus HOM05D003855 ORTHO05D004722 1.8e-115 420.2 398 58.5
Mapoly0138s0034 Marchantia polymorpha HOM05D003855 ORTHO05D004722 8.9e-115 417.9 351 60.4
arahy.Tifrunner.gnm1.ann1.7G1ZKD Arachis hypogaea HOM05D003855 ORTHO05D004722 1.5e-114 417.2 411 56.7
HPP92_005967 Vanilla planifolia HOM05D003855 ORTHO05D004722 2.0e-114 416.8 403 57.1
BcaC08g43166 Brassica carinata HOM05D003855 ORTHO05D004722 5.8e-114 415.2 403 57.8
BolC6t35586H Brassica oleracea HOM05D003855 ORTHO05D004722 5.8e-114 415.2 403 58.1
BraA06t23565Z Brassica rapa HOM05D003855 ORTHO05D004722 1.7e-113 413.7 398 57.5
SHI05876 Sapria himalayana HOM05D003855 ORTHO05D004722 8.6e-110 401.4 309 63.8
DCAR_001621 Daucus carota HOM05D003855 ORTHO05D004722 4.0e-107 392.5 401 55.6
AUR62016621 Chenopodium quinoa HOM05D003855 ORTHO05D004722 1.5e-106 390.6 273 70.0
FAN24G2426 Fragaria x ananassa HOM05D003855 ORTHO05D004722 1.1e-104 384.4 275 72.0
MD10G1092200 Malus domestica HOM05D003855 ORTHO05D004722 1.1e-104 384.4 413 54.5
Ciclev10030315m.g Citrus clementina HOM05D003855 ORTHO05D004722 9.9e-98 361.3 374 55.9
MCO05G354 Micromonas commoda HOM05D003855 ORTHO05D004722 2.7e-95 353.2 360 51.9
Prupe.8G122200 Prunus persica HOM05D003855 ORTHO05D004722 3.9e-94 349.4 395 48.1
Cre01.g020918 Chlamydomonas reinhardtii HOM05D003855 ORTHO05D004722 9.6e-93 344.7 333 52.6
SMO169G0211 Selaginella moellendorffii HOM05D003855 ORTHO05D004722 1.6e-92 344.0 290 60.3
PRCOL_00004407 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 6.2e-92 342.0 315 55.9
CBR_g17894 Chara braunii HOM05D003855 ORTHO05D004722 7.1e-80 302.0 329 51.1
CBR_g29853 Chara braunii HOM05D003855 ORTHO05D004722 1.6e-71 274.2 300 47.7
SEGI_22772 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 6.0e-71 272.3 223 61.9
TPR.G21611 Trifolium pratense HOM05D003855 ORTHO05D004722 2.4e-67 260.4 239 56.9
Lj5A208T47 Lonicera japonica HOM05D003855 ORTHO05D004722 2.0e-58 230.7 195 59.5
SHI03491 Sapria himalayana HOM05D000105 ORTHO05D004722 1.3e-49 201.4 120 79.2
MCO14G172 Micromonas commoda HOM05D003855 ORTHO05D004722 1.7e-44 184.5 293 38.6
Mapoly0138s0035 Marchantia polymorpha HOM05D003855 ORTHO05D004722 4.8e-44 183.0 170 57.1
MD05G1078000 Malus domestica HOM05D003855 ORTHO05D004722 6.3e-44 182.6 208 46.6
PRCOL_00005085 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 4.1e-43 179.9 273 37.7
Cfa026983 Carpinus fangiana HOM05D003855 ORTHO05D004722 5.3e-43 179.5 308 34.7
MD05G1077600 Malus domestica HOM05D003855 ORTHO05D004722 8.5e-41 172.2 148 57.4
Lj5A208T46 Lonicera japonica HOM05D003855 ORTHO05D004722 3.2e-40 170.2 151 65.6
CBR_g30954 Chara braunii HOM05D003855 ORTHO05D004722 2.9e-33 147.1 163 43.6
MD05G1078300 Malus domestica HOM05D003855 ORTHO05D249195 2.0e-29 134.4 290 32.4
arahy.Tifrunner.gnm1.ann1.920WM2 Arachis hypogaea HOM05D003855 ORTHO05D004722 5.0e-25 119.8 59 84.7
PRCOL_00005679 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 6.1e-23 112.8 216 34.7
MD05G1077900 Malus domestica HOM05D003855 ORTHO05D004722 6.8e-22 109.4 78 64.1
CBR_g46009 Chara braunii HOM05D003248 ORTHO05D000301 5.0e-17 93.2 195 29.2
CAN.G241.30 Capsicum annuum HOM05D003855 ORTHO05D115394 2.5e-16 90.9 145 44.1
CBR_g53546 Chara braunii HOM05D003855 ORTHO05D000497 1.6e-15 88.2 205 27.8
CBR_g30953 Chara braunii HOM05D003855 ORTHO05D004722 1.7e-12 78.2 57 57.9
MD07G1090800 Malus domestica HOM05D003855 ORTHO05D247201 3.7e-12 77.0 55 60.0
Mapoly0813s0001 Marchantia polymorpha HOM05D003855 ORTHO05D004722 2.7e-10 70.9 34 82.4
Psat1g111840 Pisum sativum HOM05D001198 ORTHO05D001599 2.5e-08 64.3 166 38.0
CAN.G587.45 Capsicum annuum HOM05D000924 ORTHO05D001209 3.3e-08 63.9 68 54.4


User provided reference genes

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