Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1034.42 Capsicum annuum HOM05D006774 ORTHO05D008411 1.0e-250 869.8 486 100.0
PGSC0003DMG400024686 Solanum tuberosum HOM05D006774 ORTHO05D008411 2.4e-220 768.8 486 88.3
Sopen01g042680 Solanum pennellii HOM05D006774 ORTHO05D008411 2.7e-219 765.4 486 84.6
MSTRG.20428 Avicennia marina HOM05D006774 ORTHO05D008411 8.2e-160 567.8 490 65.5
CSS0019331 Camellia sinensis var. sinensis HOM05D006774 ORTHO05D008411 7.6e-158 561.2 439 66.5
Migut.N02011 Erythranthe guttata HOM05D006774 ORTHO05D008411 4.8e-152 542.0 495 64.2
Cc02_g33360 Coffea canephora HOM05D006774 ORTHO05D008411 8.2e-152 541.2 432 65.0
EL10Ac4g09357 Beta vulgaris HOM05D006774 ORTHO05D008411 6.5e-141 505.0 445 57.1
TAR633G1323 Trochodendron aralioides HOM05D006774 ORTHO05D008411 1.8e-138 496.9 437 60.2
QL03p007112 Quercus lobata HOM05D006774 ORTHO05D008411 7.4e-137 491.5 447 59.1
Hund07075 Selenicereus undatus HOM05D006774 ORTHO05D008411 9.7e-137 491.1 435 60.0
Cfa006593 Carpinus fangiana HOM05D006774 ORTHO05D008411 3.7e-136 489.2 420 62.9
Cpa.g.sc48.60 Carica papaya HOM05D006774 ORTHO05D008411 1.1e-135 487.6 487 52.2
Sc09g0003160 Simmondsia chinensis HOM05D006774 ORTHO05D008411 5.3e-135 485.3 442 57.7
CSS0040526 Camellia sinensis var. sinensis HOM05D006774 ORTHO05D008411 7.0e-135 485.0 358 65.9
CiPaw.10G139100 Carya illinoinensis HOM05D006774 ORTHO05D008411 7.0e-135 485.0 499 51.7
TWI56G0431 Tripterygium wilfordii HOM05D006774 ORTHO05D008411 9.1e-135 484.6 488 53.7
MD12G1218600 Malus domestica HOM05D006774 ORTHO05D008411 6.5e-133 478.4 436 57.3
MBI04_g29615_MAGBIO Magnolia biondii HOM05D006774 ORTHO05D008411 8.5e-133 478.0 440 56.1
CANSAT54G0432 Cannabis sativa HOM05D006774 ORTHO05D008411 1.5e-132 477.2 483 55.5
Lsat_1_v5_gn_9_86761 Lactuca sativa HOM05D006774 ORTHO05D008411 1.6e-131 473.8 450 54.4
Potri.013G021500 Populus trichocarpa HOM05D006774 ORTHO05D008411 1.6e-131 473.8 443 58.2
Ah.06g189400 Amaranthus hybridus HOM05D006774 ORTHO05D008411 4.7e-131 472.2 437 53.1
Thecc.05G302500 Theobroma cacao HOM05D006774 ORTHO05D008411 8.0e-131 471.5 430 58.8
Gohir.A13G107700 Gossypium hirsutum HOM05D006774 ORTHO05D008411 1.8e-130 470.3 483 52.8
PSO478G4979 Papaver somniferum HOM05D006774 ORTHO05D008411 1.8e-130 470.3 443 56.0
PGR031G3046 Punica granatum HOM05D006774 ORTHO05D008411 3.0e-130 469.5 444 55.9
Aqoxy5G00494 Aquilegia oxysepala HOM05D006774 ORTHO05D008411 6.7e-130 468.4 442 55.9
PSO782G5565 Papaver somniferum HOM05D006774 ORTHO05D008411 2.0e-129 466.8 447 53.7
Lj9C83T13 Lonicera japonica HOM05D006774 ORTHO05D008411 4.4e-129 465.7 407 63.1
Atru.chr2.394 Acer truncatum HOM05D006774 ORTHO05D008411 7.5e-129 464.9 485 54.4
FAN09G1854 Fragaria x ananassa HOM05D006774 ORTHO05D008411 1.3e-128 464.2 408 57.4
MD04G1204900 Malus domestica HOM05D006774 ORTHO05D008411 1.3e-128 464.2 442 56.8
HanXRQChr11g0338551 Helianthus annuus HOM05D006774 ORTHO05D008411 4.1e-127 459.1 483 53.6
TWI12G1162 Tripterygium wilfordii HOM05D006774 ORTHO05D008411 1.6e-126 457.2 441 55.1
Duzib177G0798 Durio zibethinus HOM05D006774 ORTHO05D008411 4.5e-126 455.7 489 52.8
vmacro05013 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 1.7e-125 453.8 356 63.2
vmacro23279 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 1.7e-125 453.8 356 63.2
RhsimUnG0226700 Rhododendron simsii HOM05D006774 ORTHO05D008411 2.9e-125 453.0 353 63.2
Lj9C82T10 Lonicera japonica HOM05D006774 ORTHO05D008411 6.5e-125 451.8 345 66.4
Glyma.03G237400 Glycine max HOM05D006774 ORTHO05D008411 1.5e-124 450.7 489 51.5
Lalb_Chr18g0045661 Lupinus albus HOM05D006774 ORTHO05D008411 3.2e-124 449.5 427 55.5
THA.LOC104805877 Tarenaya hassleriana HOM05D006774 ORTHO05D008411 4.2e-124 449.1 441 54.6
Eucgr.C01256 Eucalyptus grandis HOM05D006774 ORTHO05D008411 5.5e-124 448.7 438 55.3
Prupe.6G324900 Prunus persica HOM05D006774 ORTHO05D008411 7.2e-124 448.4 441 55.3
ClCG03G016980 Citrullus lanatus HOM05D006774 ORTHO05D008411 9.4e-124 448.0 430 56.0
FAN02G0725 Fragaria x ananassa HOM05D006774 ORTHO05D008411 2.1e-123 446.8 439 54.7
FvH4_6g06010 Fragaria vesca HOM05D006774 ORTHO05D008411 4.7e-123 445.7 408 55.4
BcaC09g49602 Brassica carinata HOM05D006774 ORTHO05D008411 6.1e-123 445.3 441 52.4
Glyma.19G235000 Glycine max HOM05D006774 ORTHO05D008411 6.1e-123 445.3 429 55.2
arahy.Tifrunner.gnm1.ann1.V1E923 Arachis hypogaea HOM05D006774 ORTHO05D008411 8.0e-123 444.9 421 56.8
Gorai.013G124300 Gossypium raimondii HOM05D006774 ORTHO05D008411 8.0e-123 444.9 425 55.8
Sed0009699 Sechium edule HOM05D006774 ORTHO05D008411 2.3e-122 443.4 436 55.3
arahy.Tifrunner.gnm1.ann1.ST8CS6 Arachis hypogaea HOM05D006774 ORTHO05D008411 3.0e-122 443.0 420 56.4
C01p34610 Brassica napus HOM05D006774 ORTHO05D008411 3.0e-122 443.0 441 52.2
BolC1t03432H Brassica oleracea HOM05D006774 ORTHO05D008411 3.0e-122 443.0 441 52.2
BraA01t02861Z Brassica rapa HOM05D006774 ORTHO05D008411 3.0e-122 443.0 441 52.2
Duzib128G0809 Durio zibethinus HOM05D006774 ORTHO05D008411 3.0e-122 443.0 447 54.1
Ca_05814_v3 Cicer arietinum L. HOM05D006774 ORTHO05D008411 5.2e-122 442.2 421 56.1
FAN05G2700 Fragaria x ananassa HOM05D006774 ORTHO05D008411 5.2e-122 442.2 393 56.7
AL1G65540 Arabidopsis lyrata HOM05D006774 ORTHO05D008411 1.2e-121 441.0 438 54.6
A01p27210 Brassica napus HOM05D006774 ORTHO05D008411 2.0e-121 440.3 441 51.9
FAN05G0244 Fragaria x ananassa HOM05D006774 ORTHO05D008411 3.4e-121 439.5 395 57.0
Haze_04191 Corylus avellana HOM05D006774 ORTHO05D008411 4.4e-121 439.1 418 55.7
Lj1g0013332 Lotus japonicus HOM05D006774 ORTHO05D008411 4.4e-121 439.1 407 53.8
VMungo0540G2441 Vigna mungo HOM05D006774 ORTHO05D008411 4.4e-121 439.1 379 57.5
Thhalv10023440m.g Eutrema salsugineum HOM05D006774 ORTHO05D008411 7.5e-121 438.3 441 52.6
Carub.0002s0819 Capsella rubella HOM05D006774 ORTHO05D008411 1.3e-120 437.6 445 52.8
Nn1g02268 Nelumbo nucifera HOM05D006774 ORTHO05D008411 1.3e-120 437.6 408 54.2
SpUn0004_0080 Schrenkiella parvula HOM05D006774 ORTHO05D008411 3.7e-120 436.0 435 52.2
SpUn0066_0030 Schrenkiella parvula HOM05D006774 ORTHO05D008411 3.7e-120 436.0 435 52.2
BcaB04g20150 Brassica carinata HOM05D006774 ORTHO05D008411 4.8e-120 435.6 435 52.2
Lj9C84T1 Lonicera japonica HOM05D006774 ORTHO05D008411 8.3e-120 434.9 331 65.9
RcHm_v2.0_Chr3g0454971 Rosa chinensis HOM05D006774 ORTHO05D008411 2.4e-119 433.3 387 55.6
CsaV3_1G038960 Cucumis sativus L. HOM05D006774 ORTHO05D008411 1.2e-118 431.0 430 53.0
CARHR284430 Cardamine hirsuta HOM05D006774 ORTHO05D008411 7.7e-118 428.3 431 51.7
Manes.09G167600 Manihot esculenta HOM05D006774 ORTHO05D008411 3.8e-117 426.0 418 55.3
Medtr7g113420 Medicago truncatula HOM05D006774 ORTHO05D008411 5.0e-117 425.6 431 51.5
GSVIVG01000080001 Vitis vinifera HOM05D006774 ORTHO05D008411 1.1e-116 424.5 352 62.8
AT1G54990 Arabidopsis thaliana HOM05D006774 ORTHO05D008411 1.5e-116 424.1 427 53.6
Ciclev10001021m.g Citrus clementina HOM05D006774 ORTHO05D008411 1.5e-116 424.1 444 53.4
AUR62000820 Chenopodium quinoa HOM05D006774 ORTHO05D008411 4.2e-116 422.5 398 51.3
MELO3C015322.2 Cucumis melo HOM05D006774 ORTHO05D008411 4.2e-116 422.5 433 53.6
ATR0332G083 Amborella trichopoda HOM05D006774 ORTHO05D008411 5.5e-116 422.2 436 48.6
Phvul.006G091800 Phaseolus vulgaris HOM05D006774 ORTHO05D008411 7.2e-116 421.8 391 54.5
COL.COLO4_13460 Corchorus olitorius HOM05D006774 ORTHO05D008411 5.4e-111 405.6 404 56.2
Aa31LG2G11700 Aethionema arabicum HOM05D006774 ORTHO05D008411 2.7e-110 403.3 383 52.5
Sabra13G0023900 Salix brachista HOM05D006774 ORTHO05D008411 2.0e-105 387.1 469 45.8
Dinv40294 Davidia involucrata HOM05D006774 ORTHO05D008411 4.9e-104 382.5 321 66.4
TPR.G33221 Trifolium pratense HOM05D006774 ORTHO05D008411 8.0e-99 365.2 342 55.8
Psat0s3041g0040 Pisum sativum HOM05D006774 ORTHO05D008411 2.0e-97 360.5 358 51.4
ECA236G1211 Erigeron canadensis HOM05D000208 ORTHO05D000130 1.7e-96 357.5 309 57.3
Gohir.D13G110900 Gossypium hirsutum HOM05D006774 ORTHO05D008411 1.6e-94 350.9 345 55.1
CDE05G2690 Ceratophyllum demersum HOM05D006774 ORTHO05D008411 2.1e-91 340.5 426 41.1
AUR62005151 Chenopodium quinoa HOM05D006774 ORTHO05D008411 2.6e-89 333.6 267 58.1
Peaxi162Scf00037g00517 Petunia axillaris HOM05D006774 ORTHO05D008411 2.5e-84 317.0 488 47.1
unitig_736.g22755 Utricularia gibba HOM05D006774 ORTHO05D008411 8.1e-83 312.0 442 39.1
Solyc01g099120.4 Solanum lycopersicum HOM05D006774 ORTHO05D008411 1.3e-69 268.1 486 42.6
Nitab4.5_0005541g0040 Nicotiana tabacum HOM05D006774 ORTHO05D008411 8.4e-64 248.8 490 41.6
Nitab4.5_0000137g0150 Nicotiana tabacum HOM05D006774 ORTHO05D008411 1.4e-63 248.1 172 80.2
Actinidia05698 Actinidia chinensis HOM05D006774 ORTHO05D008411 7.1e-63 245.7 200 61.5
PSO478G2742 Papaver somniferum HOM05D006774 ORTHO05D008411 2.1e-62 244.2 305 45.9
Pp3c11_22860 Physcomitrium patens HOM05D006774 ORTHO05D008411 1.9e-60 237.7 400 33.2
Os11g0544100 Oryza sativa ssp. japonica HOM05D006774 ORTHO05D008411 4.8e-59 233.0 403 36.7
Zm00001eb197590 Zea mays HOM05D006774 ORTHO05D008411 7.6e-57 225.7 367 37.1
PSO782G1046 Papaver somniferum HOM05D006774 ORTHO05D008411 1.4e-50 204.9 292 41.1
Atru.chr12.689 Acer truncatum HOM05D006774 ORTHO05D008411 1.1e-42 178.7 198 50.5
SMO145G0196 Selaginella moellendorffii HOM05D006774 ORTHO05D008411 4.6e-38 163.3 381 29.4
HPP92_006104 Vanilla planifolia HOM05D006774 ORTHO05D008411 5.5e-31 139.8 179 43.0
Oeu035485.2 Olea europaea HOM05D006774 ORTHO05D001341 3.1e-18 97.4 80 62.5
Nitab4.5_0010934g0020 Nicotiana tabacum HOM05D006774 ORTHO05D008411 1.6e-17 95.1 64 75.0
CSS0005750 Camellia sinensis var. sinensis HOM05D006774 ORTHO05D008411 1.0e-13 82.4 78 71.8
Oeu051834.1 Olea europaea HOM05D006774 ORTHO05D008411 1.8e-13 81.6 88 73.9
RhsimUnG0226800 Rhododendron simsii HOM05D006774 ORTHO05D008411 2.8e-11 74.3 88 64.8
vmacro05012 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 1.8e-10 71.6 86 64.0
vmacro23280 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 4.1e-10 70.5 86 62.8
TAR362G0529 Trochodendron aralioides HOM05D006774 ORTHO05D008411 1.7e-08 65.1 57 54.4
SEGI_31760 Sequoiadendron giganteum HOM05D006774 ORTHO05D008411 5.5e-07 60.1 78 67.9


User provided reference genes

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