Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1034.41 Capsicum annuum HOM05D006420 ORTHO05D008009 1.8e-148 529.3 270 100.0
PGSC0003DMG400024687 Solanum tuberosum HOM05D006420 ORTHO05D008009 8.1e-133 477.2 270 88.1
Solyc01g099130.3 Solanum lycopersicum HOM05D006420 ORTHO05D008009 9.9e-131 470.3 270 87.4
Sopen01g042690 Solanum pennellii HOM05D006420 ORTHO05D008009 6.4e-130 467.6 270 87.0
Nitab4.5_0000137g0140 Nicotiana tabacum HOM05D006420 ORTHO05D008009 2.7e-128 462.2 270 84.4
Peaxi162Scf00037g00513 Petunia axillaris HOM05D006420 ORTHO05D008009 2.0e-123 446.0 270 85.9
Nitab4.5_0005541g0070 Nicotiana tabacum HOM05D006420 ORTHO05D008009 6.9e-108 394.4 270 74.8
Cc02_g33350 Coffea canephora HOM05D006420 ORTHO05D008009 1.5e-99 366.7 227 78.0
Lj9A86G16 Lonicera japonica HOM05D006420 ORTHO05D008009 2.6e-99 365.9 270 66.7
Lj9A85G78 Lonicera japonica HOM05D006420 ORTHO05D008009 5.8e-99 364.8 258 69.0
GSVIVG01000081001 Vitis vinifera HOM05D006420 ORTHO05D008009 1.2e-96 357.1 254 69.7
Actinidia05697 Actinidia chinensis HOM05D006420 ORTHO05D008009 4.6e-96 355.1 259 67.6
Dinv23938 Davidia involucrata HOM05D006420 ORTHO05D008009 1.3e-95 353.6 283 64.3
RhsimUnG0226900 Rhododendron simsii HOM05D006420 ORTHO05D008009 1.1e-94 350.5 253 69.2
COL.COLO4_13456 Corchorus olitorius HOM05D006420 ORTHO05D008009 2.5e-94 349.4 256 68.8
CSS0034260 Camellia sinensis var. sinensis HOM05D006420 ORTHO05D008009 4.3e-94 348.6 242 68.6
Oeu010909.1 Olea europaea HOM05D006420 ORTHO05D008009 4.3e-94 348.6 268 65.7
TAR365G0270 Trochodendron aralioides HOM05D006420 ORTHO05D008009 4.3e-94 348.6 237 72.6
MSTRG.5100 Avicennia marina HOM05D006420 ORTHO05D008009 5.7e-94 348.2 253 68.0
Hund21694 Selenicereus undatus HOM05D006420 ORTHO05D008009 5.7e-94 348.2 249 71.1
Thecc.05G302400 Theobroma cacao HOM05D006420 ORTHO05D008009 5.7e-94 348.2 240 72.1
CSS0037657 Camellia sinensis var. sinensis HOM05D006420 ORTHO05D008009 2.8e-93 345.9 242 68.2
EL10Ac4g09358 Beta vulgaris HOM05D006420 ORTHO05D008009 8.2e-93 344.4 246 69.1
TAR636G1821 Trochodendron aralioides HOM05D006420 ORTHO05D008009 8.2e-93 344.4 236 70.3
AUR62000819 Chenopodium quinoa HOM05D006420 ORTHO05D008009 1.8e-92 343.2 257 68.5
Duzib177G0348 Durio zibethinus HOM05D006420 ORTHO05D008009 3.1e-92 342.4 253 68.0
Hma1.2p1_0928F.1_g237740 Hydrangea macrophylla HOM05D006420 ORTHO05D008009 3.1e-92 342.4 259 66.0
Lsat_1_v5_gn_9_123421 Lactuca sativa HOM05D006420 ORTHO05D008009 4.1e-92 342.0 222 73.9
PGR083G0891 Punica granatum HOM05D006420 ORTHO05D008009 9.0e-92 340.9 270 63.0
Gohir.D08G227700 Gossypium hirsutum HOM05D006420 ORTHO05D008009 1.5e-91 340.1 229 72.5
Gorai.004G241900 Gossypium raimondii HOM05D006420 ORTHO05D008009 1.5e-91 340.1 229 72.5
Gohir.A08G210900 Gossypium hirsutum HOM05D006420 ORTHO05D008009 1.0e-90 337.4 229 71.6
Manes.08G120400 Manihot esculenta HOM05D006420 ORTHO05D008009 1.4e-89 333.6 247 65.2
Cfa006594 Carpinus fangiana HOM05D006420 ORTHO05D008009 1.9e-89 333.2 224 70.5
AUR62005152 Chenopodium quinoa HOM05D006420 ORTHO05D008009 1.9e-89 333.2 267 65.5
Nn4g26277 Nelumbo nucifera HOM05D006420 ORTHO05D008009 1.9e-89 333.2 228 70.2
Ca_10114_v3 Cicer arietinum L. HOM05D006420 ORTHO05D008009 7.1e-89 331.3 225 70.2
DCAR_029409 Daucus carota HOM05D006420 ORTHO05D008009 7.1e-89 331.3 224 70.1
CiPaw.07G020700 Carya illinoinensis HOM05D006420 ORTHO05D008009 1.2e-88 330.5 224 70.5
Ah.04g160290 Amaranthus hybridus HOM05D006420 ORTHO05D008009 2.1e-88 329.7 228 70.2
Aqoxy5G00493 Aquilegia oxysepala HOM05D006420 ORTHO05D008009 2.1e-88 329.7 256 62.5
Prupe.6G324800 Prunus persica HOM05D006420 ORTHO05D008009 2.1e-88 329.7 259 62.9
CANSAT54G1557 Cannabis sativa HOM05D006420 ORTHO05D008009 4.6e-88 328.6 229 69.0
Migut.N01987 Erythranthe guttata HOM05D006420 ORTHO05D008009 1.3e-87 327.0 258 64.3
Migut.N02012 Erythranthe guttata HOM05D006420 ORTHO05D008009 1.3e-87 327.0 258 64.3
Nn1g02269 Nelumbo nucifera HOM05D006420 ORTHO05D008009 1.3e-87 327.0 246 65.9
THA.LOC104820863 Tarenaya hassleriana HOM05D006420 ORTHO05D008009 1.3e-87 327.0 225 70.7
Sc06g0003280 Simmondsia chinensis HOM05D006420 ORTHO05D008009 2.3e-87 326.2 224 71.4
vmacro05011 Vaccinium macrocarpon HOM05D006420 ORTHO05D008009 2.3e-87 326.2 224 70.1
Duzib106G1877 Durio zibethinus HOM05D006420 ORTHO05D008009 3.0e-87 325.9 224 71.4
Psat6g150480 Pisum sativum HOM05D006420 ORTHO05D008009 6.7e-87 324.7 248 64.5
Cpa.g.sc48.61 Carica papaya HOM05D006420 ORTHO05D008009 8.7e-87 324.3 258 63.2
Cfa006595 Carpinus fangiana HOM05D006420 ORTHO05D008009 1.5e-86 323.6 224 69.2
Ciclev10002177m.g Citrus clementina HOM05D006420 ORTHO05D008009 2.5e-86 322.8 228 69.3
MD12G1218500 Malus domestica HOM05D006420 ORTHO05D008009 2.5e-86 322.8 253 63.2
Glyma.10G154000 Glycine max HOM05D006420 ORTHO05D008009 3.3e-86 322.4 225 68.4
Atru.chr2.393 Acer truncatum HOM05D006420 ORTHO05D008009 5.7e-86 321.6 226 68.6
Lalb_Chr21g0310681 Lupinus albus HOM05D006420 ORTHO05D008009 5.7e-86 321.6 226 69.5
TPR.G6113 Trifolium pratense HOM05D006420 ORTHO05D008009 5.7e-86 321.6 225 68.9
MD04G1204800 Malus domestica HOM05D006420 ORTHO05D008009 9.7e-86 320.9 257 63.0
Medtr1g082950 Medicago truncatula HOM05D006420 ORTHO05D008009 1.6e-85 320.1 225 68.9
VMungo0720G1765 Vigna mungo HOM05D006420 ORTHO05D008009 2.8e-85 319.3 225 68.0
BcaC06g31763 Brassica carinata HOM05D006420 ORTHO05D008009 3.7e-85 318.9 236 66.1
Lj5g0015213 Lotus japonicus HOM05D006420 ORTHO05D008009 3.7e-85 318.9 226 68.1
arahy.Tifrunner.gnm1.ann1.GHU2GX Arachis hypogaea HOM05D006420 ORTHO05D008009 4.8e-85 318.5 223 70.0
arahy.Tifrunner.gnm1.ann1.7ESY4D Arachis hypogaea HOM05D006420 ORTHO05D008009 1.1e-84 317.4 223 70.0
Glyma.20G234300 Glycine max HOM05D006420 ORTHO05D008009 1.1e-84 317.4 238 64.3
RcHm_v2.0_Chr3g0454981 Rosa chinensis HOM05D006420 ORTHO05D008009 2.4e-84 316.2 274 59.5
FAN14G2531 Fragaria x ananassa HOM05D006420 ORTHO05D008009 4.1e-84 315.5 262 60.3
FvH4_6g06020 Fragaria vesca HOM05D006420 ORTHO05D008009 5.3e-84 315.1 236 65.3
PSO210G7816 Papaver somniferum HOM05D006420 ORTHO05D008009 5.3e-84 315.1 232 64.7
Phvul.007G179700 Phaseolus vulgaris HOM05D006420 ORTHO05D008009 6.9e-84 314.7 225 66.7
FAN09G3808 Fragaria x ananassa HOM05D006420 ORTHO05D008009 1.5e-83 313.5 238 64.7
A03p68650 Brassica napus HOM05D006420 ORTHO05D008009 2.0e-83 313.2 230 67.0
BraSC39t46193Z Brassica rapa HOM05D006420 ORTHO05D008009 2.0e-83 313.2 230 67.0
FAN05G3282 Fragaria x ananassa HOM05D006420 ORTHO05D008009 1.0e-82 310.8 236 64.8
Sed0005627 Sechium edule HOM05D006420 ORTHO05D008009 1.0e-82 310.8 253 61.7
Thhalv10023646m.g Eutrema salsugineum HOM05D006420 ORTHO05D008009 1.3e-82 310.5 230 67.4
Aa31LG2G11700 Aethionema arabicum HOM05D006774 ORTHO05D008411 5.0e-82 308.5 228 66.7
FAN02G2504 Fragaria x ananassa HOM05D006420 ORTHO05D008009 8.5e-82 307.8 233 65.2
ClCG02G015760 Citrullus lanatus HOM05D006420 ORTHO05D008009 1.1e-81 307.4 261 60.2
BcaC02g10755 Brassica carinata HOM05D006420 ORTHO05D008009 1.9e-81 306.6 242 63.6
C04p25420 Brassica napus HOM05D006420 ORTHO05D008009 1.9e-81 306.6 242 63.6
BolC4t24060H Brassica oleracea HOM05D006420 ORTHO05D008009 1.9e-81 306.6 242 63.6
FAN05G1000 Fragaria x ananassa HOM05D006420 ORTHO05D008009 4.2e-81 305.4 247 62.8
QL03p007116 Quercus lobata HOM05D006420 ORTHO05D008009 4.2e-81 305.4 246 62.2
CsaV3_2G005340 Cucumis sativus L. HOM05D006420 ORTHO05D008009 5.5e-81 305.1 263 59.7
CARHR287540 Cardamine hirsuta HOM05D006420 ORTHO05D008009 6.1e-80 301.6 221 68.8
Carub.0002s0818 Capsella rubella HOM05D006420 ORTHO05D008009 1.4e-79 300.4 221 67.4
HPP92_020377 Vanilla planifolia HOM05D006420 ORTHO05D008009 6.7e-79 298.1 229 62.4
TWI56G0424 Tripterygium wilfordii HOM05D006420 ORTHO05D008009 8.8e-79 297.7 257 59.9
SpUn0004_0090 Schrenkiella parvula HOM05D006420 ORTHO05D008009 3.3e-78 295.8 221 67.4
AL1G65580 Arabidopsis lyrata HOM05D006420 ORTHO05D008009 7.4e-78 294.7 223 66.8
AT1G55000 Arabidopsis thaliana HOM05D006420 ORTHO05D008009 1.7e-77 293.5 221 67.0
Haze_04190 Corylus avellana HOM05D006420 ORTHO05D008009 6.9e-76 288.1 323 48.6
Potri.013G021600 Populus trichocarpa HOM05D006420 ORTHO05D008009 6.9e-76 288.1 241 60.6
ATR0332G062 Amborella trichopoda HOM05D006420 ORTHO05D008009 2.2e-74 283.1 272 51.5
MBI04_g29616_MAGBIO Magnolia biondii HOM05D006420 ORTHO05D008009 5.0e-74 282.0 186 69.9
HanXRQChr16g0524621 Helianthus annuus HOM05D006420 ORTHO05D008009 7.2e-73 278.1 218 62.4
ECA232G4325 Erigeron canadensis HOM05D006420 ORTHO05D008009 2.1e-72 276.6 221 62.0
Sabra13G0024000 Salix brachista HOM05D006420 ORTHO05D008009 1.8e-71 273.5 241 56.8
SGA_v2.0_scaffold81G26063 Striga asiatica HOM05D006420 ORTHO05D000105 2.8e-69 266.2 447 37.6
Zm00001eb054020 Zea mays HOM05D006420 ORTHO05D008009 2.9e-66 256.1 208 57.2
Os03g0699600 Oryza sativa ssp. japonica HOM05D006420 ORTHO05D008009 6.5e-66 255.0 208 56.2
MELO3C004253.2 Cucumis melo HOM05D000208 ORTHO05D000130 5.5e-65 251.9 210 61.9
Pp3c16_5370 Physcomitrium patens HOM05D006420 ORTHO05D008009 4.0e-55 219.2 210 52.4
AagrBONN_evm.TU.Sc2ySwM_368.542 Anthoceros agrestis HOM05D006420 ORTHO05D008009 5.9e-51 205.3 211 49.3
Potri.005G032100 Populus trichocarpa HOM05D006420 ORTHO05D008009 1.0e-50 204.5 158 61.4
SMO356G0643 Selaginella moellendorffii HOM05D006420 ORTHO05D008009 2.7e-48 196.4 209 47.8
CDE02G2742 Ceratophyllum demersum HOM05D006420 ORTHO05D008009 1.0e-47 194.5 128 69.5
Rhsim07G0185100 Rhododendron simsii HOM05D006420 ORTHO05D008009 6.3e-45 185.3 125 72.0
MD10G1167700 Malus domestica HOM05D006420 ORTHO05D008009 1.6e-43 180.6 117 70.9
Eucgr.B01949 Eucalyptus grandis HOM05D006420 ORTHO05D008009 8.0e-40 168.3 112 70.5
Eucgr.B01946 Eucalyptus grandis HOM05D006420 ORTHO05D008009 4.0e-39 166.0 104 74.0
Eucgr.B01859 Eucalyptus grandis HOM05D006420 ORTHO05D008009 3.4e-38 162.9 108 70.4
vmacro23281 Vaccinium macrocarpon HOM05D006420 ORTHO05D008009 2.5e-33 146.7 98 68.4
QL03p007970 Quercus lobata HOM05D006420 ORTHO05D008009 9.5e-33 144.8 115 62.6
QL03p007144 Quercus lobata HOM05D006420 ORTHO05D008009 8.0e-32 141.7 116 62.9
Sabra05G0034600 Salix brachista HOM05D006420 ORTHO05D008009 1.4e-31 141.0 135 54.1
Cre16.g667100 Chlamydomonas reinhardtii HOM05D006420 ORTHO05D008009 1.6e-24 117.5 234 31.2
SEGI_28170 Sequoiadendron giganteum HOM05D006420 ORTHO05D008009 9.2e-20 101.7 83 61.4
QL03p007137 Quercus lobata HOM05D006420 ORTHO05D008009 1.2e-14 84.7 67 62.7
QL03p007977 Quercus lobata HOM05D006420 ORTHO05D008009 1.2e-14 84.7 67 62.7
vmacro23282 Vaccinium macrocarpon HOM05D006420 ORTHO05D008009 3.2e-12 76.6 100 47.0
Thhalv10024156m.g Eutrema salsugineum HOM05D006420 ORTHO05D008009 1.1e-09 68.2 84 46.4
GSVIVG01012047001 Vitis vinifera HOM05D002624 ORTHO05D002796 5.2e-07 59.3 101 33.7
SalBow5G0658 Salvia bowleyana HOM05D041286 ORTHO05D008009 7.6e-06 55.5 47 57.4


User provided reference genes

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