Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1034.25 Capsicum annuum HOM05D004847 ORTHO05D005856 1.5e-187 659.8 473 100.0
PGSC0003DMG401024742 Solanum tuberosum HOM05D004847 ORTHO05D005856 2.3e-159 566.2 473 89.6
Solyc01g099270.2 Solanum lycopersicum HOM05D004847 ORTHO05D005856 3.0e-159 565.8 502 85.9
Sopen01g042820 Solanum pennellii HOM05D004847 ORTHO05D005856 1.1e-156 557.4 502 85.3
Peaxi162Scf00037g00632 Petunia axillaris HOM05D004847 ORTHO05D005856 1.2e-147 527.3 470 77.9
Nitab4.5_0003156g0010 Nicotiana tabacum HOM05D004847 ORTHO05D005856 1.4e-143 513.8 471 75.8
Nitab4.5_0000137g0030 Nicotiana tabacum HOM05D004847 ORTHO05D005856 2.2e-141 506.5 476 70.2
Cc11_g03560 Coffea canephora HOM05D004847 ORTHO05D005856 1.6e-115 420.6 472 55.7
QL03p006978 Quercus lobata HOM05D004847 ORTHO05D005856 2.5e-113 413.3 459 55.1
Gorai.004G241800 Gossypium raimondii HOM05D004847 ORTHO05D005856 5.4e-108 395.6 462 53.2
Thecc.05G303800 Theobroma cacao HOM05D004847 ORTHO05D005856 1.7e-106 390.6 463 53.6
Gohir.A11G264800 Gossypium hirsutum HOM05D004847 ORTHO05D005856 3.9e-106 389.4 395 57.5
COL.COLO4_13475 Corchorus olitorius HOM05D004847 ORTHO05D005856 1.5e-105 387.5 468 52.6
Gohir.D11G275000 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.9e-105 387.1 446 52.7
Gorai.007G296800 Gossypium raimondii HOM05D004847 ORTHO05D005856 1.9e-105 387.1 446 52.7
SalBow3G4161 Salvia bowleyana HOM05D004847 ORTHO05D005856 3.3e-105 386.3 475 52.2
Gohir.A08G210800 Gossypium hirsutum HOM05D004847 ORTHO05D005856 9.5e-105 384.8 468 51.9
Duzib128G0091 Durio zibethinus HOM05D004847 ORTHO05D005856 2.8e-104 383.3 395 56.2
Duzib106G0633 Durio zibethinus HOM05D004847 ORTHO05D005856 4.7e-104 382.5 399 56.4
Gohir.D08G227600 Gossypium hirsutum HOM05D004847 ORTHO05D005856 8.1e-104 381.7 292 71.2
TAR633G0229 Trochodendron aralioides HOM05D004847 ORTHO05D005856 8.9e-103 378.3 458 52.2
TAR362G0189 Trochodendron aralioides HOM05D004847 ORTHO05D005856 5.8e-102 375.6 458 50.9
MSTRG.27999 Avicennia marina HOM05D004847 ORTHO05D005856 1.3e-101 374.4 298 69.1
Potri.013G022600 Populus trichocarpa HOM05D004847 ORTHO05D005856 1.7e-101 374.0 472 51.9
TWI56G1294 Tripterygium wilfordii HOM05D004847 ORTHO05D005856 2.2e-101 373.6 471 50.3
Sabra05G0035400 Salix brachista HOM05D004847 ORTHO05D005856 2.9e-101 373.2 471 49.0
Potri.005G033200 Populus trichocarpa HOM05D004847 ORTHO05D005856 1.1e-100 371.3 471 50.3
DCAR_003332 Daucus carota HOM05D004847 ORTHO05D005856 5.4e-100 369.0 471 50.3
GSVIVG01000048001 Vitis vinifera HOM05D004847 ORTHO05D005856 4.6e-99 365.9 461 50.3
Prupe.6G326100 Prunus persica HOM05D004847 ORTHO05D005856 3.9e-98 362.8 469 49.9
CSS0010861 Camellia sinensis var. sinensis HOM05D004847 ORTHO05D005856 1.5e-97 360.9 458 51.7
Aqoxy5G00505 Aquilegia oxysepala HOM05D004847 ORTHO05D005856 7.3e-97 358.6 296 66.9
Actinidia24643 Actinidia chinensis HOM05D004847 ORTHO05D005856 1.6e-96 357.5 475 50.3
CiPaw.08G164900 Carya illinoinensis HOM05D004847 ORTHO05D005856 8.1e-96 355.1 398 55.8
Manes.09G166900 Manihot esculenta HOM05D004847 ORTHO05D005856 1.8e-95 354.0 472 50.6
Dinv23942 Davidia involucrata HOM05D004847 ORTHO05D005856 1.2e-94 351.3 480 50.4
Eucgr.L01544 Eucalyptus grandis HOM05D004847 ORTHO05D005856 1.5e-94 350.9 471 48.8
CiPaw.07G017600 Carya illinoinensis HOM05D004847 ORTHO05D005856 5.4e-92 342.4 429 50.3
MD12G1219500 Malus domestica HOM05D004847 ORTHO05D005856 5.4e-92 342.4 466 47.9
Hma1.2p1_0928F.1_g237810 Hydrangea macrophylla HOM05D004847 ORTHO05D005856 7.1e-92 342.0 475 48.6
Migut.B01038 Erythranthe guttata HOM05D004847 ORTHO05D005856 1.2e-91 341.3 412 53.4
Ciclev10003680m.g Citrus clementina HOM05D004847 ORTHO05D001311 1.6e-91 340.9 501 45.5
Atru.chr2.410 Acer truncatum HOM05D004847 ORTHO05D005856 2.7e-91 340.1 485 49.1
PSO832G1768 Papaver somniferum HOM05D004847 ORTHO05D005856 3.5e-91 339.7 464 49.4
Haze_04198 Corylus avellana HOM05D004847 ORTHO05D005856 1.0e-90 338.2 461 49.2
RcHm_v2.0_Chr3g0454731 Rosa chinensis HOM05D004847 ORTHO05D005856 1.3e-90 337.8 477 47.0
Nn4g26247 Nelumbo nucifera HOM05D004847 ORTHO05D005856 1.1e-89 334.7 460 48.5
Lj5A533T17 Lonicera japonica HOM05D004847 ORTHO05D005856 2.5e-89 333.6 491 49.1
FAN05G5722 Fragaria x ananassa HOM05D004847 ORTHO05D005856 4.3e-89 332.8 478 46.4
PSO210G5284 Papaver somniferum HOM05D004847 ORTHO05D005856 4.3e-89 332.8 464 48.9
FAN05G5436 Fragaria x ananassa HOM05D004847 ORTHO05D005856 1.3e-88 331.3 478 46.2
TWI12G0805 Tripterygium wilfordii HOM05D004847 ORTHO05D005856 4.8e-88 329.3 278 66.2
VMungo0720G3140 Vigna mungo HOM05D004847 ORTHO05D005856 4.8e-88 329.3 276 67.0
arahy.Tifrunner.gnm1.ann1.WTPV8B Arachis hypogaea HOM05D004847 ORTHO05D005856 6.2e-88 328.9 479 47.0
Sabra13G0024700 Salix brachista HOM05D004847 ORTHO05D005856 8.1e-88 328.6 547 42.0
vmacro19624 Vaccinium macrocarpon HOM05D004847 ORTHO05D005856 1.1e-87 328.2 480 49.8
arahy.Tifrunner.gnm1.ann1.91A0PW Arachis hypogaea HOM05D004847 ORTHO05D005856 1.4e-87 327.8 479 47.6
FvH4_6g05820 Fragaria vesca HOM05D004847 ORTHO05D005856 1.8e-87 327.4 412 50.5
FAN14G3900 Fragaria x ananassa HOM05D004847 ORTHO05D005856 1.8e-87 327.4 412 50.5
Oeu017487.1 Olea europaea HOM05D004847 ORTHO05D005856 2.4e-87 327.0 443 50.3
Phvul.007G179800 Phaseolus vulgaris HOM05D004847 ORTHO05D005856 5.3e-87 325.9 479 50.9
Migut.N02003 Erythranthe guttata HOM05D004847 ORTHO05D005856 6.9e-87 325.5 488 48.0
Glyma.20G234200 Glycine max HOM05D004847 ORTHO05D005856 9.0e-87 325.1 276 66.3
Ca_10113_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 4.5e-86 322.8 473 46.9
CANSAT54G0893 Cannabis sativa HOM05D004847 ORTHO05D005856 1.3e-85 321.2 476 46.4
Sc16g0008460 Simmondsia chinensis HOM05D004847 ORTHO05D005856 1.3e-85 321.2 311 59.2
Lsat_1_v5_gn_9_123520 Lactuca sativa HOM05D004847 ORTHO05D005856 1.7e-85 320.9 498 49.4
MD04G1205400 Malus domestica HOM05D004847 ORTHO05D005856 1.7e-85 320.9 469 45.6
Glyma.10G154100 Glycine max HOM05D004847 ORTHO05D005856 1.4e-84 317.8 278 64.4
CsaV3_2G005250 Cucumis sativus L. HOM05D004847 ORTHO05D005856 2.4e-84 317.0 472 59.5
MELO3C004268.2 Cucumis melo HOM05D004847 ORTHO05D005856 7.1e-84 315.5 307 61.2
PGR083G0144 Punica granatum HOM05D004847 ORTHO05D005856 2.1e-83 313.9 299 62.2
Lalb_Chr04g0260731 Lupinus albus HOM05D004847 ORTHO05D005856 2.7e-83 313.5 404 51.2
Migut.O00711 Erythranthe guttata HOM05D004847 ORTHO05D005856 3.0e-82 310.1 413 50.6
Psat0s3135g0240 Pisum sativum HOM05D004847 ORTHO05D005856 6.7e-82 308.9 473 48.6
MBI19_g05601_MAGBIO Magnolia biondii HOM05D004847 ORTHO05D005856 2.5e-81 307.0 295 59.3
THA.LOC104818696 Tarenaya hassleriana HOM05D004847 ORTHO05D005856 9.6e-81 305.1 498 49.2
AT3G05330 Arabidopsis thaliana HOM05D004847 ORTHO05D005856 3.7e-80 303.1 415 48.2
CSS0017838 Camellia sinensis var. sinensis HOM05D004847 ORTHO05D005856 1.4e-79 301.2 402 51.2
BraSC132t45510Z Brassica rapa HOM05D004847 ORTHO05D005856 6.9e-79 298.9 494 46.0
AL3G15780 Arabidopsis lyrata HOM05D004847 ORTHO05D005856 2.6e-78 297.0 510 42.9
BNapus_Darmor_BZH_scaffold_114p00170 Brassica napus HOM05D004847 ORTHO05D005856 3.4e-78 296.6 496 45.4
BolC1t05700H Brassica oleracea HOM05D004847 ORTHO05D005856 5.8e-78 295.8 492 44.3
DCAR_029413 Daucus carota HOM05D004847 ORTHO05D005856 7.6e-78 295.4 480 45.6
Thhalv10020613m.g Eutrema salsugineum HOM05D004847 ORTHO05D005856 1.3e-77 294.7 527 42.3
Hund07068 Selenicereus undatus HOM05D004847 ORTHO05D005856 2.9e-77 293.5 303 55.8
AUR62000830 Chenopodium quinoa HOM05D004847 ORTHO05D005856 5.5e-76 289.3 308 56.8
Sed0004129 Sechium edule HOM05D004847 ORTHO05D005856 9.3e-76 288.5 468 54.5
Carub.0003s0461 Capsella rubella HOM05D004847 ORTHO05D005856 2.7e-75 287.0 522 42.7
CARHR079680 Cardamine hirsuta HOM05D004847 ORTHO05D005856 2.7e-75 287.0 428 46.3
Lalb_Chr02g0148231 Lupinus albus HOM05D004847 ORTHO05D005856 2.7e-75 287.0 462 45.5
Lj5g0019148 Lotus japonicus HOM05D004847 ORTHO05D005856 2.3e-74 283.9 306 57.2
AUR62005144 Chenopodium quinoa HOM05D004847 ORTHO05D005856 5.1e-74 282.7 287 57.1
A05p42290 Brassica napus HOM05D004847 ORTHO05D005856 6.7e-74 282.3 500 45.6
BraA05t23024Z Brassica rapa HOM05D004847 ORTHO05D005856 6.7e-74 282.3 499 46.9
Medtr7g113510 Medicago truncatula HOM05D004847 ORTHO05D005856 1.1e-73 281.6 481 44.9
EL10Ac4g09352 Beta vulgaris HOM05D004847 ORTHO05D005856 1.9e-73 280.8 302 55.3
Ah.06g189340 Amaranthus hybridus HOM05D004847 ORTHO05D005856 1.6e-72 277.7 279 56.6
ECA240G3864 Erigeron canadensis HOM05D004847 ORTHO05D005856 3.7e-72 276.6 446 45.1
ClCG02G015810 Citrullus lanatus HOM05D000141 ORTHO05D001311 2.4e-71 273.9 260 64.6
Sp3g04200 Schrenkiella parvula HOM05D004847 ORTHO05D005856 3.1e-71 273.5 519 40.8
C05p61870 Brassica napus HOM05D004847 ORTHO05D005856 5.3e-71 272.7 494 45.1
BolC5t34847H Brassica oleracea HOM05D004847 ORTHO05D005856 5.3e-71 272.7 494 45.1
TPR.G33190 Trifolium pratense HOM05D004847 ORTHO05D005856 6.9e-71 272.3 280 58.2
Glyma.19G235300 Glycine max HOM05D004847 ORTHO05D005856 3.8e-69 266.5 303 56.8
BcaC05g30136 Brassica carinata HOM05D004847 ORTHO05D005856 8.4e-69 265.4 300 55.7
Rhsim05G0141800 Rhododendron simsii HOM05D004847 ORTHO05D005856 1.1e-68 265.0 482 43.4
HanXRQChr09g0248411 Helianthus annuus HOM05D004847 ORTHO05D005856 1.5e-65 254.6 483 41.6
Actinidia28666 Actinidia chinensis HOM05D004847 ORTHO05D005856 5.7e-65 252.7 444 43.0
Aa31LG5G15720 Aethionema arabicum HOM05D000141 ORTHO05D001311 1.6e-64 251.1 386 50.0
Phvul.006G091600 Phaseolus vulgaris HOM05D004847 ORTHO05D005856 2.2e-64 250.8 300 54.7
CDE10G0375 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 2.4e-63 247.3 260 53.1
SGA_v2.0_scaffold81G26072 Striga asiatica HOM05D004847 ORTHO05D005856 7.9e-59 232.3 291 54.3
Glyma.03G237700 Glycine max HOM05D004847 ORTHO05D005856 2.0e-57 227.6 286 51.7
Zm00001eb286860 Zea mays HOM05D004847 ORTHO05D005856 2.8e-56 223.8 357 48.2
SGA_v2.0_scaffold80G25911 Striga asiatica HOM05D004847 ORTHO05D005856 4.1e-55 219.9 303 52.1
BcaC05g30154 Brassica carinata HOM05D004847 ORTHO05D005856 6.9e-55 219.2 261 54.4
HPP92_003277 Vanilla planifolia HOM05D004847 ORTHO05D005856 1.3e-53 214.9 290 48.6
ATR0626G214 Amborella trichopoda HOM05D004847 ORTHO05D005856 1.2e-51 208.4 279 49.5
Medtr1g082940 Medicago truncatula HOM05D004847 ORTHO05D005856 2.1e-51 207.6 424 38.4
CDE10G0883 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 4.7e-51 206.5 367 38.7
Cpa.g.sc48.48 Carica papaya HOM05D004847 ORTHO05D005856 5.7e-49 199.5 213 57.7
TPR.G11389 Trifolium pratense HOM05D004847 ORTHO05D005856 9.1e-47 192.2 371 40.7
VMungo0540G0069 Vigna mungo HOM05D004847 ORTHO05D005856 2.5e-44 184.1 295 45.4
TPR.G6113 Trifolium pratense HOM05D006420 ORTHO05D008009 3.0e-42 177.2 132 71.2
Ca_09350_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 1.3e-37 161.8 374 37.4
Os02g0459300 Oryza sativa ssp. japonica HOM05D004847 ORTHO05D005856 1.0e-34 152.1 224 49.6
Psat0s212g0040 Pisum sativum HOM05D004847 ORTHO05D005856 4.8e-32 143.3 173 53.8
CDE10G0745 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 2.9e-29 134.0 103 70.9
Cpa.g.sc48.49 Carica papaya HOM05D004847 ORTHO05D005856 4.2e-28 130.2 78 87.2
Manes.08G120800 Manihot esculenta HOM05D004847 ORTHO05D005856 3.6e-27 127.1 468 32.3
GSVIVG01000050001 Vitis vinifera HOM05D000141 ORTHO05D001311 3.1e-23 114.0 100 64.0
Zm00001eb269750 Zea mays HOM05D004847 ORTHO05D005856 1.2e-22 112.1 268 36.6
Gohir.D12G153350 Gossypium hirsutum HOM05D004847 ORTHO05D005856 5.0e-21 106.7 70 74.3
Actinidia19789 Actinidia chinensis HOM05D004847 ORTHO05D005856 2.5e-20 104.4 84 72.6
Gorai.004G124500 Gossypium raimondii HOM05D004847 ORTHO05D005856 5.5e-20 103.2 82 62.2
SEGI_00809 Sequoiadendron giganteum HOM05D004847 ORTHO05D005856 2.3e-18 97.8 307 30.0
Zm00001eb092520 Zea mays HOM05D004847 ORTHO05D005856 2.3e-18 97.8 188 46.3
MD00G1120700 Malus domestica HOM05D004847 ORTHO05D005856 4.0e-18 97.1 67 70.1
MD02G1275700 Malus domestica HOM05D004847 ORTHO05D005856 5.2e-18 96.7 67 68.7
Ca_09354_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 4.9e-16 90.1 59 72.9
Gohir.D08G115550 Gossypium hirsutum HOM05D004847 ORTHO05D005856 6.3e-16 89.7 56 78.6
Psat3g073720 Pisum sativum HOM05D004847 ORTHO05D005856 1.1e-12 79.0 120 43.3
SEGI_03169 Sequoiadendron giganteum HOM05D004847 ORTHO05D005856 1.9e-12 78.2 325 29.5
SHI18142 Sapria himalayana HOM05D000141 ORTHO05D001311 3.3e-12 77.4 271 34.3
Lsat_1_v5_gn_8_18301 Lactuca sativa HOM05D004847 ORTHO05D005856 1.2e-11 75.5 98 48.0
Actinidia19788 Actinidia chinensis HOM05D004847 ORTHO05D005856 7.8e-06 56.2 39 74.4


User provided reference genes

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