Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1030.31 Capsicum annuum HOM05D004702 ORTHO05D005505 1.7e-279 965.3 481 100.0
Nitab4.5_0000287g0020 Nicotiana tabacum HOM05D004702 ORTHO05D005505 3.3e-214 748.4 486 83.1
Nitab4.5_0005129g0020 Nicotiana tabacum HOM05D004702 ORTHO05D005505 9.7e-214 746.9 486 82.7
PGSC0003DMG400008008 Solanum tuberosum HOM05D004702 ORTHO05D005505 9.4e-201 703.7 489 77.9
Solyc04g078630.3 Solanum lycopersicum HOM05D004702 ORTHO05D005505 2.0e-195 686.0 485 76.3
Peaxi162Scf00882g00017 Petunia axillaris HOM05D004702 ORTHO05D005505 4.0e-183 645.2 487 73.3
Sopen04g032210 Solanum pennellii HOM05D004702 ORTHO05D005505 7.0e-180 634.4 419 79.5
Cc10_g04740 Coffea canephora HOM05D004702 ORTHO05D005505 2.9e-157 559.3 485 62.1
Oeu054792.1 Olea europaea HOM05D004702 ORTHO05D005505 1.4e-156 557.0 485 62.9
Oeu009775.1 Olea europaea HOM05D004702 ORTHO05D005505 7.8e-155 551.2 487 62.0
Dinv35933 Davidia involucrata HOM05D004702 ORTHO05D005505 1.4e-148 530.4 490 58.0
Manes.18G040500 Manihot esculenta HOM05D004702 ORTHO05D005505 7.3e-145 518.1 486 59.1
Manes.05G176200 Manihot esculenta HOM05D004702 ORTHO05D005505 1.1e-143 514.2 492 58.5
Gohir.A05G204600 Gossypium hirsutum HOM05D004702 ORTHO05D005505 1.8e-143 513.5 487 57.9
Gorai.009G214400 Gossypium raimondii HOM05D004702 ORTHO05D005505 1.8e-143 513.5 489 57.7
Gohir.D05G207800 Gossypium hirsutum HOM05D004702 ORTHO05D005505 5.3e-143 511.9 489 57.5
Thecc.08G002800 Theobroma cacao HOM05D004702 ORTHO05D005505 1.5e-142 510.4 488 56.8
COL.COLO4_03654 Corchorus olitorius HOM05D004702 ORTHO05D005505 4.5e-142 508.8 504 56.5
Lsat_1_v5_gn_1_22040 Lactuca sativa HOM05D004702 ORTHO05D005505 6.4e-141 505.0 489 57.3
Duzib093G1440 Durio zibethinus HOM05D004702 ORTHO05D005505 1.1e-140 504.2 486 56.4
Hma1.2p1_0360F.1_g135770 Hydrangea macrophylla HOM05D004702 ORTHO05D005505 2.4e-140 503.1 484 57.0
Ciclev10001048m.g Citrus clementina HOM05D004702 ORTHO05D005505 7.1e-140 501.5 491 57.0
Potri.002G123800 Populus trichocarpa HOM05D004702 ORTHO05D005505 9.3e-140 501.1 480 57.1
Potri.014G025000 Populus trichocarpa HOM05D004702 ORTHO05D005505 7.9e-139 498.0 446 60.1
Duzib041G0633 Durio zibethinus HOM05D004702 ORTHO05D005505 3.0e-138 496.1 487 57.7
TWI56G0769 Tripterygium wilfordii HOM05D004702 ORTHO05D005505 3.3e-137 492.7 457 59.3
Lj4C62G3 Lonicera japonica HOM05D004702 ORTHO05D005505 3.7e-136 489.2 489 56.9
CSS0001222 Camellia sinensis var. sinensis HOM05D004702 ORTHO05D005505 4.0e-135 485.7 457 59.3
Sabra02G0097200 Salix brachista HOM05D004702 ORTHO05D005505 5.3e-135 485.3 475 56.0
CANSAT25G0849 Cannabis sativa HOM05D004702 ORTHO05D005505 2.0e-134 483.4 492 55.1
Eucgr.F00191 Eucalyptus grandis HOM05D004702 ORTHO05D005505 7.6e-134 481.5 459 57.5
Sabra14G0017000 Salix brachista HOM05D004702 ORTHO05D005505 7.6e-134 481.5 479 55.7
TAR376G0323 Trochodendron aralioides HOM05D004702 ORTHO05D005505 1.7e-133 480.3 480 57.1
DCAR_012789 Daucus carota HOM05D004702 ORTHO05D005505 6.0e-131 471.9 444 58.8
Dinv39282 Davidia involucrata HOM05D004702 ORTHO05D005505 6.0e-131 471.9 486 56.0
SalBow7G0327 Salvia bowleyana HOM05D004702 ORTHO05D005505 2.3e-130 469.9 479 53.4
Cpa.g.sc21.167 Carica papaya HOM05D004702 ORTHO05D005505 1.9e-129 466.8 490 54.3
Actinidia22651 Actinidia chinensis HOM05D004702 ORTHO05D005505 3.3e-129 466.1 494 55.7
ECA247G0009 Erigeron canadensis HOM05D004702 ORTHO05D005505 1.3e-128 464.2 499 53.9
TAR381G0178 Trochodendron aralioides HOM05D004702 ORTHO05D005505 2.8e-128 463.0 498 53.0
Phvul.009G067000 Phaseolus vulgaris HOM05D004702 ORTHO05D005505 1.2e-126 457.6 500 51.0
FAN15G1938 Fragaria x ananassa HOM05D004702 ORTHO05D005505 3.4e-126 456.1 492 53.7
RcHm_v2.0_Chr6g0308391 Rosa chinensis HOM05D004702 ORTHO05D005505 3.4e-126 456.1 489 53.6
VMungo1309G0408 Vigna mungo HOM05D004702 ORTHO05D005505 4.5e-126 455.7 500 49.8
FAN24G1074 Fragaria x ananassa HOM05D004702 ORTHO05D005505 7.6e-126 454.9 494 53.2
FvH4_2g33990 Fragaria vesca HOM05D004702 ORTHO05D005505 1.7e-125 453.8 494 53.0
vmacro21496 Vaccinium macrocarpon HOM05D004702 ORTHO05D005505 2.2e-125 453.4 496 53.4
MSTRG.1063 Avicennia marina HOM05D004702 ORTHO05D005505 2.9e-125 453.0 472 54.2
Prupe.1G431800 Prunus persica HOM05D004702 ORTHO05D005505 1.6e-123 447.2 479 53.4
Glyma.06G042300 Glycine max HOM05D004702 ORTHO05D005505 2.1e-123 446.8 509 49.1
Actinidia01089 Actinidia chinensis HOM05D004702 ORTHO05D005505 4.6e-123 445.7 447 57.0
arahy.Tifrunner.gnm1.ann1.L8L5ZS Arachis hypogaea HOM05D004702 ORTHO05D005505 7.9e-123 444.9 514 49.0
FAN20G1472 Fragaria x ananassa HOM05D004702 ORTHO05D005505 1.3e-122 444.1 492 52.4
FAN27G2110 Fragaria x ananassa HOM05D004702 ORTHO05D005505 1.8e-122 443.7 492 52.2
Atru.BG.237.p Acer truncatum HOM05D004702 ORTHO05D005505 2.3e-122 443.4 391 61.1
arahy.Tifrunner.gnm1.ann1.WJS3XD Arachis hypogaea HOM05D004702 ORTHO05D005505 1.1e-121 441.0 516 49.0
Gohir.D06G019009 Gossypium hirsutum HOM05D004702 ORTHO05D005505 3.3e-121 439.5 430 56.0
HanXRQChr09g0267191 Helianthus annuus HOM05D004702 ORTHO05D005505 5.7e-121 438.7 405 58.5
Gorai.010G022200 Gossypium raimondii HOM05D004702 ORTHO05D005505 7.4e-121 438.3 430 55.8
Lj1g0008884 Lotus japonicus HOM05D004702 ORTHO05D005505 3.7e-120 436.0 483 50.5
Gohir.A06G020700 Gossypium hirsutum HOM05D004702 ORTHO05D005505 1.1e-119 434.5 430 55.6
QL02p004185 Quercus lobata HOM05D004702 ORTHO05D005505 6.9e-119 431.8 485 50.3
ECA232G1346 Erigeron canadensis HOM05D004702 ORTHO05D005505 1.5e-118 430.6 409 57.7
HanXRQChr10g0286851 Helianthus annuus HOM05D004702 ORTHO05D005505 1.5e-118 430.6 478 51.7
MD15G1078600 Malus domestica HOM05D004702 ORTHO05D005505 7.7e-118 428.3 437 54.2
HanXRQChr04g0103941 Helianthus annuus HOM05D004702 ORTHO05D005505 1.3e-117 427.6 475 51.8
TPR.G24175 Trifolium pratense HOM05D004702 ORTHO05D005505 1.3e-117 427.6 506 48.8
Ca_15936_v3 Cicer arietinum L. HOM05D004702 ORTHO05D005505 1.9e-116 423.7 487 49.1
CiPaw.15G053800 Carya illinoinensis HOM05D004702 ORTHO05D005505 1.2e-115 421.0 484 52.5
VMungo0647G1506 Vigna mungo HOM05D004702 ORTHO05D005505 1.2e-115 421.0 485 51.3
MD08G1095800 Malus domestica HOM05D004702 ORTHO05D005505 2.7e-115 419.9 494 49.6
CsaV3_4G034620 Cucumis sativus L. HOM05D004702 ORTHO05D005505 3.0e-114 416.4 442 55.4
PGR083G2110 Punica granatum HOM05D004702 ORTHO05D005505 3.0e-114 416.4 507 49.3
Medtr3g102120 Medicago truncatula HOM05D004702 ORTHO05D005505 3.9e-114 416.0 480 48.3
Glyma.17G239800 Glycine max HOM05D004702 ORTHO05D005505 1.1e-113 414.5 487 49.3
Medtr1g019040 Medicago truncatula HOM05D004702 ORTHO05D005505 1.1e-113 414.5 401 53.6
MELO3C016778.2 Cucumis melo HOM05D004702 ORTHO05D005505 3.3e-113 412.9 447 55.5
Haze_18055 Corylus avellana HOM05D004702 ORTHO05D005505 4.8e-112 409.1 482 49.6
Haze_18053 Corylus avellana HOM05D004702 ORTHO05D005505 1.1e-111 407.9 482 49.2
DCAR_019426 Daucus carota HOM05D004702 ORTHO05D005505 1.1e-111 407.9 489 50.5
Psat0s3591g0040 Pisum sativum HOM05D004702 ORTHO05D005505 5.3e-111 405.6 502 47.2
PSO675G4695 Papaver somniferum HOM05D004702 ORTHO05D005505 9.1e-111 404.8 484 49.2
Cfa009956 Carpinus fangiana HOM05D004702 ORTHO05D005505 1.5e-110 404.1 482 49.8
Migut.C00543 Erythranthe guttata HOM05D004702 ORTHO05D005505 2.6e-110 403.3 498 47.6
ClCG05G020100 Citrullus lanatus HOM05D004702 ORTHO05D005505 4.5e-110 402.5 447 55.0
PSO541G5103 Papaver somniferum HOM05D004702 ORTHO05D005505 2.2e-109 400.2 465 52.7
Aqoxy6G01249 Aquilegia oxysepala HOM05D004702 ORTHO05D005505 1.4e-108 397.5 466 47.9
HanXRQChr16g0509011 Helianthus annuus HOM05D004702 ORTHO05D005505 5.5e-108 395.6 409 54.5
TPR.G3800 Trifolium pratense HOM05D004702 ORTHO05D005505 1.6e-107 394.0 492 47.0
Sc02g0007400 Simmondsia chinensis HOM05D004702 ORTHO05D005505 1.1e-105 387.9 475 46.7
TAR625G0654 Trochodendron aralioides HOM05D004702 ORTHO05D005505 3.7e-104 382.9 417 51.3
Nn5g30368 Nelumbo nucifera HOM05D004702 ORTHO05D005505 5.9e-102 375.6 444 47.5
MBI16_g04313_MAGBIO Magnolia biondii HOM05D004702 ORTHO05D005505 2.2e-101 373.6 501 45.3
SGA_v2.0_scaffold14G06974 Striga asiatica HOM05D004702 ORTHO05D005505 1.5e-100 370.9 487 43.9
Phvul.001G024000 Phaseolus vulgaris HOM05D004702 ORTHO05D005505 2.7e-99 366.7 350 57.7
Sed0014061 Sechium edule HOM05D004702 ORTHO05D005505 5.7e-97 359.0 477 48.2
Lj5g0017670 Lotus japonicus HOM05D004702 ORTHO05D005505 2.8e-96 356.7 479 42.6
Lalb_Chr14g0368541 Lupinus albus HOM05D004702 ORTHO05D005505 1.1e-95 354.8 474 45.4
Glyma.14G085000 Glycine max HOM05D004702 ORTHO05D005505 3.1e-95 353.2 347 54.8
AUR62035465 Chenopodium quinoa HOM05D004702 ORTHO05D005505 5.3e-95 352.4 482 44.4
EL10As7g23762 Beta vulgaris HOM05D004702 ORTHO05D005505 1.2e-94 351.3 413 49.4
Ah.05g167300 Amaranthus hybridus HOM05D004702 ORTHO05D005505 2.0e-94 350.5 442 47.1
Hund05336 Selenicereus undatus HOM05D004702 ORTHO05D005505 5.9e-94 349.0 473 44.2
Rhsim06G0053300 Rhododendron simsii HOM05D004702 ORTHO05D005505 1.1e-92 344.7 398 50.8
THA.LOC104801428 Tarenaya hassleriana HOM05D004702 ORTHO05D005505 2.5e-92 343.6 499 40.7
Aa31LG3G14060 Aethionema arabicum HOM05D004702 ORTHO05D005505 7.2e-92 342.0 495 42.0
Thhalv10028638m.g Eutrema salsugineum HOM05D004702 ORTHO05D005505 3.4e-89 333.2 518 41.1
Carub.0006s2627 Capsella rubella HOM05D004702 ORTHO05D005505 9.8e-89 331.6 496 41.9
AL6G41200 Arabidopsis lyrata HOM05D004702 ORTHO05D005505 1.3e-88 331.3 509 41.5
SGA_v2.0_scaffold197G41020 Striga asiatica HOM05D004702 ORTHO05D005505 2.2e-88 330.5 468 43.6
BcaB01g01331 Brassica carinata HOM05D004702 ORTHO05D005505 4.5e-86 322.8 508 40.6
unitig_8.g5031 Utricularia gibba HOM05D004702 ORTHO05D005505 6.1e-83 312.4 468 42.9
A10p08810 Brassica napus HOM05D004702 ORTHO05D005505 2.6e-81 307.0 496 39.7
Ca_13276_v3 Cicer arietinum L. HOM05D004702 ORTHO05D005505 3.4e-81 306.6 303 53.8
Haze_18006 Corylus avellana HOM05D004702 ORTHO05D005505 3.4e-81 306.6 404 46.0
BraSC37t46123Z Brassica rapa HOM05D004702 ORTHO05D005505 1.3e-80 304.7 496 39.7
Ah.11g043030 Amaranthus hybridus HOM05D004702 ORTHO05D005505 2.4e-79 300.4 474 41.6
Migut.N02734 Erythranthe guttata HOM05D004702 ORTHO05D005505 4.1e-79 299.7 459 38.8
C09p38410 Brassica napus HOM05D004702 ORTHO05D005505 4.2e-76 289.7 496 39.1
GSVIVG01009450001 Vitis vinifera HOM05D004702 ORTHO05D005505 7.2e-76 288.9 201 68.7
SalBow6G2833 Salvia bowleyana HOM05D004702 ORTHO05D005505 2.1e-75 287.3 469 41.4
SalBow6G7027 Salvia bowleyana HOM05D004702 ORTHO05D005505 8.0e-75 285.4 469 41.4
HPP92_017369 Vanilla planifolia HOM05D004702 ORTHO05D005505 1.0e-74 285.0 502 37.3
Atru.chr13.733 Acer truncatum HOM05D004702 ORTHO05D005505 3.7e-72 276.6 204 67.6
Lalb_Chr23g0267231 Lupinus albus HOM05D004702 ORTHO05D005505 4.6e-70 269.6 235 55.3
CDE01G0679 Ceratophyllum demersum HOM05D004702 ORTHO05D005505 2.1e-67 260.8 487 35.9
Zm00001eb247120 Zea mays HOM05D004702 ORTHO05D005505 2.8e-67 260.4 512 32.4
Lsat_1_v5_gn_4_127260 Lactuca sativa HOM05D004702 ORTHO05D005505 8.0e-67 258.8 203 65.5
ATR0762G037 Amborella trichopoda HOM05D004702 ORTHO05D005505 1.0e-66 258.5 491 37.3
SEGI_05734 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 1.7e-61 241.1 503 34.8
SEGI_19446 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 3.0e-61 240.4 506 35.6
SEGI_36308 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 8.9e-58 228.8 510 33.1
HPP92_010365 Vanilla planifolia HOM05D004702 ORTHO05D005505 1.3e-56 224.9 480 32.7
SEGI_03871 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 3.2e-55 220.3 409 37.7
Pp3c15_17100 Physcomitrium patens HOM05D004702 ORTHO05D005505 3.9e-53 213.4 421 33.3
AagrBONN_evm.TU.Sc2ySwM_228.394 Anthoceros agrestis HOM05D004702 ORTHO05D005505 9.5e-52 208.8 415 34.9
Psat0s3398g0240 Pisum sativum HOM05D004702 ORTHO05D005505 4.0e-50 203.4 159 59.1
SEGI_12847 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 8.4e-48 195.7 394 35.0
arahy.Tifrunner.gnm1.ann1.7E6QIB Arachis hypogaea HOM05D004702 ORTHO05D005505 5.4e-47 193.0 175 57.7
arahy.Tifrunner.gnm1.ann1.7V26PZ Arachis hypogaea HOM05D004702 ORTHO05D005505 5.4e-47 193.0 175 57.7
Sp6g10680 Schrenkiella parvula HOM05D004702 ORTHO05D005505 1.4e-42 178.3 164 55.5
AT4G06536 Arabidopsis thaliana HOM05D004702 ORTHO05D005505 3.1e-42 177.2 178 55.6
CARHR264230 Cardamine hirsuta HOM05D004702 ORTHO05D005505 2.6e-41 174.1 164 56.1
SMO145G0126 Selaginella moellendorffii HOM05D004702 ORTHO05D005505 7.6e-41 172.6 550 29.3
AT4G06534 Arabidopsis thaliana HOM05D004702 ORTHO05D005505 1.0e-37 162.2 335 35.2
Sp6g10670 Schrenkiella parvula HOM05D004702 ORTHO05D005505 1.5e-36 158.3 344 34.9
SMO112G0032 Selaginella moellendorffii HOM05D004702 ORTHO05D005505 2.5e-36 157.5 391 30.7
AUR62044709 Chenopodium quinoa HOM05D004702 ORTHO05D005505 5.6e-36 156.4 315 35.9
AUR62044714 Chenopodium quinoa HOM05D004702 ORTHO05D005505 1.6e-35 154.8 275 39.6
Os02g0614700 Oryza sativa ssp. japonica HOM05D004702 ORTHO05D005505 3.6e-35 153.7 161 45.3
Psat0s3398g0080 Pisum sativum HOM05D004702 ORTHO05D005505 2.6e-33 147.5 109 59.6
Nn7g37290 Nelumbo nucifera HOM05D004702 ORTHO05D005505 8.4e-32 142.5 151 49.7
Glyma.15G095100 Glycine max HOM05D004702 ORTHO05D005505 5.1e-21 106.7 112 47.3
CBR_g733 Chara braunii HOM05D004702 ORTHO05D005505 3.7e-19 100.5 315 27.9
SMO364G0277 Selaginella moellendorffii HOM05D051657 ORTHO05D005505 8.7e-13 79.3 122 36.1
SEGI_40713 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 6.9e-10 69.7 149 28.2


User provided reference genes

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