Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1030.1 Capsicum annuum HOM05D004168 ORTHO05D004999 2.4e-147 525.4 253 100.0
Sopen04g032490 Solanum pennellii HOM05D004168 ORTHO05D004999 4.4e-125 451.4 260 85.8
Solyc04g078890.4 Solanum lycopersicum HOM05D004168 ORTHO05D004999 1.1e-123 446.8 260 84.6
Nitab4.5_0000287g0250 Nicotiana tabacum HOM05D004168 ORTHO05D004999 2.7e-122 442.2 259 83.8
PGSC0003DMG401007971 Solanum tuberosum HOM05D004168 ORTHO05D004999 3.5e-122 441.8 257 84.8
Nitab4.5_0002760g0060 Nicotiana tabacum HOM05D004168 ORTHO05D004999 9.6e-120 433.7 260 81.5
Peaxi162Scf00252g00056 Petunia axillaris HOM05D004168 ORTHO05D004999 2.0e-109 399.4 260 77.3
Lj4A773T42 Lonicera japonica HOM05D004168 ORTHO05D004999 6.3e-95 351.3 258 66.7
Actinidia38059 Actinidia chinensis HOM05D004168 ORTHO05D004999 1.1e-94 350.5 255 65.9
Actinidia29872 Actinidia chinensis HOM05D004168 ORTHO05D004999 5.3e-94 348.2 258 64.7
Sc02g0007150 Simmondsia chinensis HOM05D004168 ORTHO05D004999 2.2e-92 342.8 253 67.6
CSS0011562 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 1.1e-91 340.5 255 66.7
CSS0013402 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 1.4e-91 340.1 255 66.7
TAR628G1263 Trochodendron aralioides HOM05D004168 ORTHO05D004999 3.6e-90 335.5 255 66.3
Oeu043572.2 Olea europaea HOM05D004168 ORTHO05D004999 1.3e-89 333.6 256 64.5
Rhsim06G0050100 Rhododendron simsii HOM05D004168 ORTHO05D004999 1.3e-89 333.6 258 63.2
MSTRG.1350 Avicennia marina HOM05D004168 ORTHO05D004999 1.1e-88 330.5 248 65.3
vmacro21519 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 2.5e-88 329.3 256 63.3
Manes.05G174100 Manihot esculenta HOM05D004168 ORTHO05D004999 2.2e-87 326.2 252 62.3
Cc10_g04130 Coffea canephora HOM05D004168 ORTHO05D004999 1.4e-86 323.6 256 62.1
TAR376G0672 Trochodendron aralioides HOM05D004168 ORTHO05D004999 9.1e-86 320.9 255 63.5
Potri.002G126000 Populus trichocarpa HOM05D004168 ORTHO05D004999 1.2e-85 320.5 255 62.7
Manes.18G037500 Manihot esculenta HOM05D004168 ORTHO05D004999 1.5e-85 320.1 256 61.7
Lsat_1_v5_gn_1_21041 Lactuca sativa HOM05D004168 ORTHO05D004999 7.7e-85 317.8 257 61.5
Ciclev10002229m.g Citrus clementina HOM05D004168 ORTHO05D004999 1.0e-84 317.4 261 60.9
Rhsim07G0228300 Rhododendron simsii HOM05D004168 ORTHO05D004999 1.3e-84 317.0 258 59.7
Hund06209 Selenicereus undatus HOM05D004168 ORTHO05D004999 2.9e-84 315.8 238 63.9
Migut.C00576 Erythranthe guttata HOM05D004168 ORTHO05D004999 3.8e-84 315.5 256 60.9
QL12p001799 Quercus lobata HOM05D004168 ORTHO05D004999 5.0e-84 315.1 180 77.8
Dinv35958 Davidia involucrata HOM05D004168 ORTHO05D004999 6.5e-84 314.7 249 63.5
COL.COLO4_26513 Corchorus olitorius HOM05D004168 ORTHO05D004999 8.5e-84 314.3 265 60.0
TWI36G1266 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 1.1e-83 313.9 251 61.0
PGR083G0647 Punica granatum HOM05D004168 ORTHO05D004999 1.4e-83 313.5 259 60.2
Aqoxy1G00522 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 1.9e-83 313.2 257 62.6
GSVIVG01009491001 Vitis vinifera HOM05D004168 ORTHO05D004999 2.5e-83 312.8 257 59.1
Eucgr.F00224 Eucalyptus grandis HOM05D004168 ORTHO05D004999 5.5e-83 311.6 261 60.9
MBI15_g10497_MAGBIO Magnolia biondii HOM05D004168 ORTHO05D004999 7.2e-83 311.2 249 63.5
Gohir.A05G202600 Gossypium hirsutum HOM05D004168 ORTHO05D004999 9.4e-83 310.8 260 58.1
EL10As14g24078 Beta vulgaris HOM05D004168 ORTHO05D004999 1.2e-82 310.5 244 62.7
AUR62011389 Chenopodium quinoa HOM05D004168 ORTHO05D004999 2.7e-82 309.3 245 64.5
GSVIVG01024177001 Vitis vinifera HOM05D004168 ORTHO05D004999 2.7e-82 309.3 189 75.1
CiPaw.12G069100 Carya illinoinensis HOM05D004168 ORTHO05D004999 3.6e-82 308.9 249 61.8
Gohir.D05G205800 Gossypium hirsutum HOM05D004168 ORTHO05D004999 4.6e-82 308.5 260 58.1
Gorai.009G212100 Gossypium raimondii HOM05D004168 ORTHO05D004999 6.1e-82 308.1 263 57.0
Sabra02G0098700 Salix brachista HOM05D004168 ORTHO05D004999 6.1e-82 308.1 253 59.3
Ah.01g019770 Amaranthus hybridus HOM05D004168 ORTHO05D004999 1.4e-81 307.0 256 61.7
AUR62016672 Chenopodium quinoa HOM05D004168 ORTHO05D004999 1.4e-81 307.0 236 65.7
DCAR_008795 Daucus carota HOM05D004168 ORTHO05D004999 1.8e-81 306.6 259 57.5
arahy.Tifrunner.gnm1.ann1.TVNS6S Arachis hypogaea HOM05D004168 ORTHO05D004999 3.0e-81 305.8 257 60.7
FAN20G1800 Fragaria x ananassa HOM05D004168 ORTHO05D004999 3.0e-81 305.8 257 60.3
EL10Ac9g21781 Beta vulgaris HOM05D004168 ORTHO05D004999 5.1e-81 305.1 251 61.0
HanXRQChr02g0039451 Helianthus annuus HOM05D004168 ORTHO05D004999 5.1e-81 305.1 264 58.7
Prupe.1G435200 Prunus persica HOM05D004168 ORTHO05D004999 5.1e-81 305.1 247 61.5
Thecc.08G006900 Theobroma cacao HOM05D004168 ORTHO05D004999 5.1e-81 305.1 261 58.2
CsaV3_4G034330 Cucumis sativus L. HOM05D004168 ORTHO05D004999 8.8e-81 304.3 261 57.9
ClCG05G019900 Citrullus lanatus HOM05D004168 ORTHO05D004999 1.5e-80 303.5 253 58.1
SGA_v2.0_scaffold14G07004 Striga asiatica HOM05D004168 ORTHO05D004999 1.5e-80 303.5 248 59.7
CANSAT25G0219 Cannabis sativa HOM05D004168 ORTHO05D004999 2.0e-80 303.1 256 60.9
unitig_19.g30012 Utricularia gibba HOM05D004168 ORTHO05D004999 3.3e-80 302.4 245 62.9
unitig_8.g5020 Utricularia gibba HOM05D004168 ORTHO05D004999 3.3e-80 302.4 245 62.9
FvH4_2g34410 Fragaria vesca HOM05D004168 ORTHO05D004999 5.7e-80 301.6 252 60.7
FAN24G2672 Fragaria x ananassa HOM05D004168 ORTHO05D004999 5.7e-80 301.6 252 60.7
PSO384G0569 Papaver somniferum HOM05D004168 ORTHO05D004999 9.7e-80 300.8 257 60.3
DCAR_012778 Daucus carota HOM05D004168 ORTHO05D004999 2.2e-79 299.7 252 60.7
MD08G1101200 Malus domestica HOM05D004168 ORTHO05D004999 2.8e-79 299.3 220 65.5
Os01g0772400 Oryza sativa ssp. japonica HOM05D004168 ORTHO05D004999 2.8e-79 299.3 193 70.5
DCAR_019452 Daucus carota HOM05D004168 ORTHO05D004999 3.7e-79 298.9 254 59.1
ECA247G0458 Erigeron canadensis HOM05D004168 ORTHO05D004999 3.7e-79 298.9 261 57.5
Duzib116G0163 Durio zibethinus HOM05D004168 ORTHO05D004999 4.8e-79 298.5 259 58.3
Hund00296 Selenicereus undatus HOM05D004168 ORTHO05D004999 4.8e-79 298.5 213 66.2
Hund00303 Selenicereus undatus HOM05D004168 ORTHO05D004999 4.8e-79 298.5 213 66.2
VMungo1309G0269 Vigna mungo HOM05D004168 ORTHO05D004999 4.8e-79 298.5 251 58.2
FAN15G2652 Fragaria x ananassa HOM05D004168 ORTHO05D004999 1.1e-78 297.4 256 59.0
Gorai.010G019900 Gossypium raimondii HOM05D004168 ORTHO05D004999 1.1e-78 297.4 258 57.4
CARHR224370 Cardamine hirsuta HOM05D004168 ORTHO05D004999 1.8e-78 296.6 259 58.7
Lsat_1_v5_gn_4_125661 Lactuca sativa HOM05D004168 ORTHO05D004999 1.8e-78 296.6 247 61.5
HanXRQChr09g0267591 Helianthus annuus HOM05D004168 ORTHO05D004999 4.1e-78 295.4 257 56.8
RcHm_v2.0_Chr6g0307961 Rosa chinensis HOM05D004168 ORTHO05D004999 4.1e-78 295.4 249 60.6
Gohir.D06G017000 Gossypium hirsutum HOM05D004168 ORTHO05D004999 6.9e-78 294.7 258 56.6
PGR031G2881 Punica granatum HOM05D004168 ORTHO05D004999 6.9e-78 294.7 227 63.0
HPP92_018641 Vanilla planifolia HOM05D004168 ORTHO05D004999 1.5e-77 293.5 191 73.8
CiPaw.11G099200 Carya illinoinensis HOM05D004168 ORTHO05D004999 2.6e-77 292.7 247 59.9
arahy.Tifrunner.gnm1.ann1.85Q9C5 Arachis hypogaea HOM05D004168 ORTHO05D004999 3.4e-77 292.4 252 59.9
Sed0010101 Sechium edule HOM05D004168 ORTHO05D004999 3.4e-77 292.4 255 57.6
THA.LOC104812820 Tarenaya hassleriana HOM05D004168 ORTHO05D004999 4.5e-77 292.0 180 70.6
Cpa.g.sc13.291 Carica papaya HOM05D004168 ORTHO05D004999 5.9e-77 291.6 177 72.3
CDE06G0679 Ceratophyllum demersum HOM05D004168 ORTHO05D004999 7.7e-77 291.2 185 73.5
Lj1g0018004 Lotus japonicus HOM05D004168 ORTHO05D004999 1.0e-76 290.8 253 57.7
arahy.Tifrunner.gnm1.ann1.IT5IHR Arachis hypogaea HOM05D004168 ORTHO05D004999 1.7e-76 290.0 252 59.9
BcaC09g51623 Brassica carinata HOM05D004168 ORTHO05D004999 3.8e-76 288.9 254 56.3
Aa31LG6G400 Aethionema arabicum HOM05D004168 ORTHO05D004999 5.0e-76 288.5 267 55.1
Carub.0007s2373 Capsella rubella HOM05D004168 ORTHO05D004999 5.0e-76 288.5 178 72.5
Aqoxy2G00574 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 6.5e-76 288.1 170 74.1
Sed0009126 Sechium edule HOM05D004168 ORTHO05D004999 8.5e-76 287.7 292 52.1
AL7G36940 Arabidopsis lyrata HOM05D004168 ORTHO05D004999 1.1e-75 287.3 260 55.4
AT4G17650 Arabidopsis thaliana HOM05D004168 ORTHO05D004999 1.1e-75 287.3 263 54.4
TWI56G0083 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 1.1e-75 287.3 248 55.6
BraA01t00914Z Brassica rapa HOM05D004168 ORTHO05D004999 1.4e-75 287.0 257 55.6
ECA232G1782 Erigeron canadensis HOM05D004168 ORTHO05D004999 1.4e-75 287.0 254 57.5
Glyma.06G040100 Glycine max HOM05D004168 ORTHO05D004999 1.9e-75 286.6 261 55.9
Sp7g16490 Schrenkiella parvula HOM05D004168 ORTHO05D004999 1.9e-75 286.6 260 56.2
BcaNung06715 Brassica carinata HOM05D004168 ORTHO05D004999 2.5e-75 286.2 252 55.6
Glyma.04G039100 Glycine max HOM05D004168 ORTHO05D004999 2.5e-75 286.2 258 55.8
C01p11320 Brassica napus HOM05D004168 ORTHO05D004999 3.2e-75 285.8 256 55.5
BolC1t01097H Brassica oleracea HOM05D001479 ORTHO05D001401 9.4e-75 284.3 250 56.0
BcaNung00072 Brassica carinata HOM05D004168 ORTHO05D004999 1.2e-74 283.9 252 56.0
Thhalv10026045m.g Eutrema salsugineum HOM05D004168 ORTHO05D004999 1.2e-74 283.9 250 56.8
Medtr3g101750 Medicago truncatula HOM05D004168 ORTHO05D004999 1.2e-74 283.9 254 58.7
Psat5g043040 Pisum sativum HOM05D004168 ORTHO05D004999 1.2e-74 283.9 261 57.5
A01p09710 Brassica napus HOM05D004168 ORTHO05D004999 1.6e-74 283.5 250 56.8
Lalb_Chr23g0267171 Lupinus albus HOM05D004168 ORTHO05D004999 2.7e-74 282.7 259 53.7
TPR.G24157 Trifolium pratense HOM05D004168 ORTHO05D004999 7.9e-74 281.2 260 56.5
Ca_15947_v3 Cicer arietinum L. HOM05D004168 ORTHO05D004999 1.4e-73 280.4 258 55.4
MSTRG.22261 Avicennia marina HOM05D004168 ORTHO05D004999 6.7e-73 278.1 253 55.3
BcaB04g18436 Brassica carinata HOM05D004168 ORTHO05D004999 1.1e-72 277.3 182 67.6
A08p13270 Brassica napus HOM05D004168 ORTHO05D004999 4.8e-71 271.9 198 63.1
BraA08t33308Z Brassica rapa HOM05D004168 ORTHO05D004999 4.8e-71 271.9 198 63.1
Nn2g14539 Nelumbo nucifera HOM05D004168 ORTHO05D004999 4.5e-69 265.4 145 84.1
FAN27G1360 Fragaria x ananassa HOM05D004168 ORTHO05D004999 5.0e-68 261.9 150 79.3
MD15G1082400 Malus domestica HOM05D004168 ORTHO05D004999 3.2e-67 259.2 247 55.5
Cfa018557 Carpinus fangiana HOM05D004168 ORTHO05D004999 2.7e-66 256.1 220 59.1
Haze_17522 Corylus avellana HOM05D004168 ORTHO05D004999 4.7e-66 255.4 223 58.7
CANSAT11G0235 Cannabis sativa HOM05D004168 ORTHO05D004999 2.3e-65 253.1 251 55.0
Gohir.A06G018666 Gossypium hirsutum HOM05D004168 ORTHO05D004999 1.4e-62 243.8 258 50.0
MELO3C016753.2 Cucumis melo HOM05D004168 ORTHO05D004999 2.4e-62 243.0 225 54.7
Mapoly0004s0036 Marchantia polymorpha HOM05D004168 ORTHO05D004999 3.1e-62 242.7 171 63.7
SalBow7G4699 Salvia bowleyana HOM05D004168 ORTHO05D004999 4.1e-62 242.3 217 56.7
Zm00001eb370050 Zea mays HOM05D004168 ORTHO05D004999 9.1e-62 241.1 137 77.4
Cfa012532 Carpinus fangiana HOM05D004168 ORTHO05D002421 3.5e-61 239.2 235 53.2
BcaC07g38091 Brassica carinata HOM05D004168 ORTHO05D004999 1.0e-60 237.7 181 60.2
Phvul.009G065300 Phaseolus vulgaris HOM05D004168 ORTHO05D004999 3.2e-59 232.6 213 54.5
SEGI_05154 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 6.1e-58 228.4 143 72.0
Eucgr.F02339 Eucalyptus grandis HOM05D004168 ORTHO05D004999 1.0e-57 227.6 180 61.1
Eucgr.F02343 Eucalyptus grandis HOM05D004168 ORTHO05D004999 8.8e-57 224.6 150 70.7
AagrBONN_evm.TU.Sc2ySwM_228.4844 Anthoceros agrestis HOM05D004168 ORTHO05D004999 2.6e-56 223.0 168 60.7
CBR_g66636 Chara braunii HOM05D004168 ORTHO05D004999 2.6e-56 223.0 192 55.2
vmacro04448 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 4.4e-56 222.2 258 45.7
Eucgr.L02367 Eucalyptus grandis HOM05D004168 ORTHO05D004999 1.3e-55 220.7 266 47.4
SMO340G0178 Selaginella moellendorffii HOM05D004168 ORTHO05D004999 2.8e-55 219.5 164 59.8
Pp3c21_16730 Physcomitrium patens HOM05D004168 ORTHO05D004999 1.1e-54 217.6 171 59.6
Duzib093G1913 Durio zibethinus HOM05D004168 ORTHO05D004999 7.7e-53 211.5 261 46.0
Pp3c22_1290 Physcomitrium patens HOM05D004168 ORTHO05D004999 9.5e-51 204.5 166 56.6
PSO339G0184 Papaver somniferum HOM05D004168 ORTHO05D004999 1.5e-48 197.2 255 45.9
Lalb_Chr11g0062631 Lupinus albus HOM05D004168 ORTHO05D004999 1.1e-46 191.0 116 74.1
Zm00001eb151870 Zea mays HOM05D004168 ORTHO05D004999 7.3e-35 151.8 132 55.3
SEGI_12997 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 9.5e-35 151.4 95 73.7
arahy.Tifrunner.gnm1.ann1.F8YVUF Arachis hypogaea HOM05D004168 ORTHO05D004999 2.8e-34 149.8 143 53.8
arahy.Tifrunner.gnm1.ann1.ZKL3GY Arachis hypogaea HOM05D004168 ORTHO05D004999 2.4e-30 136.7 84 76.2
AUR62007226 Chenopodium quinoa HOM05D004168 ORTHO05D004999 2.4e-30 136.7 96 65.6
SEGI_03271 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 1.6e-29 134.0 85 67.1
arahy.Tifrunner.gnm1.ann1.RZ37P0 Arachis hypogaea HOM05D004168 ORTHO05D004999 1.5e-27 127.5 215 39.1
Oeu049977.1 Olea europaea HOM05D004168 ORTHO05D004999 8.1e-26 121.7 78 74.4
Cre07.g345700 Chlamydomonas reinhardtii HOM05D004168 ORTHO05D004999 1.4e-25 120.9 213 31.0
MCO12G423 Micromonas commoda HOM05D004168 ORTHO05D004999 8.9e-25 118.2 139 42.4
Atru.chr13.696 Acer truncatum HOM05D004168 ORTHO05D004999 9.9e-24 114.8 63 84.1
arahy.Tifrunner.gnm1.ann1.H0AX16 Arachis hypogaea HOM05D004168 ORTHO05D004999 5.4e-22 109.0 71 69.0
Sc15g0006120 Simmondsia chinensis HOM05D004168 ORTHO05D003195 9.2e-22 108.2 63 74.6
arahy.Tifrunner.gnm1.ann1.TNR0C9 Arachis hypogaea HOM05D004168 ORTHO05D004999 1.8e-17 94.0 67 59.7
arahy.Tifrunner.gnm1.ann1.CBC9PR Arachis hypogaea HOM05D004168 ORTHO05D004999 1.3e-15 87.8 84 47.6
Gohir.A06G060332 Gossypium hirsutum HOM05D004168 ORTHO05D004999 1.7e-12 77.4 52 63.5
Lj6g0018320 Lotus japonicus HOM05D004168 ORTHO05D004999 1.5e-11 74.3 46 69.6
Gorai.002G139800 Gossypium raimondii HOM05D004168 ORTHO05D004999 4.7e-10 69.3 52 57.7
Gohir.D01G114560 Gossypium hirsutum HOM05D004168 ORTHO05D004999 8.1e-10 68.6 51 58.8
Dinv39314 Davidia involucrata HOM05D003792 ORTHO05D003195 1.8e-09 67.4 104 41.3
COL.COLO4_26873 Corchorus olitorius HOM05D004168 ORTHO05D004999 6.9e-09 65.5 39 71.8
CDE07G0992 Ceratophyllum demersum HOM05D004168 ORTHO05D004999 2.9e-07 60.1 39 69.2
Gohir.D06G118000 Gossypium hirsutum HOM05D004168 ORTHO05D004999 1.1e-06 58.2 43 58.1
MBI15_g33084_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D002129 7.1e-06 55.5 38 63.2


User provided reference genes

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