Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G103.22 Capsicum annuum HOM05D001997 ORTHO05D005560 3.9e-61 238.0 127 100.0
Nitab4.5_0001586g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 4.4e-57 224.6 126 96.8
Nitab4.5_0004056g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 4.4e-57 224.6 126 96.8
PGSC0003DMG400016301 Solanum tuberosum HOM05D001997 ORTHO05D005560 1.1e-55 219.9 126 94.4
Solyc06g053385.2 Solanum lycopersicum HOM05D001997 ORTHO05D005560 5.4e-55 217.6 126 93.7
Sopen06g018440 Solanum pennellii HOM05D001997 ORTHO05D005560 5.4e-55 217.6 126 93.7
Peaxi162Scf00180g00117 Petunia axillaris HOM05D001997 ORTHO05D005560 1.6e-54 216.1 126 93.7
SalBow2G2973 Salvia bowleyana HOM05D001997 ORTHO05D005560 1.0e-45 186.8 110 88.2
Oeu032138.1 Olea europaea HOM05D001997 ORTHO05D005560 2.3e-45 185.7 126 80.2
Migut.N03073 Erythranthe guttata HOM05D001997 ORTHO05D005560 3.9e-45 184.9 126 80.2
MSTRG.22024 Avicennia marina HOM05D001997 ORTHO05D005560 1.5e-44 183.0 104 87.5
Migut.M00095 Erythranthe guttata HOM05D001997 ORTHO05D005560 5.6e-44 181.0 120 80.0
Cc10_g09020 Coffea canephora HOM05D001997 ORTHO05D005560 2.8e-43 178.7 117 81.2
Dinv02939 Davidia involucrata HOM05D001997 ORTHO05D005560 3.6e-43 178.3 124 77.4
unitig_27.g24921 Utricularia gibba HOM05D001997 ORTHO05D005560 1.4e-42 176.4 124 76.6
SGA_v2.0_scaffold25G10995 Striga asiatica HOM05D000987 ORTHO05D000831 3.1e-42 175.3 124 77.4
Actinidia27107 Actinidia chinensis HOM05D001997 ORTHO05D005560 1.2e-41 173.3 121 79.3
Rhsim02G0083500 Rhododendron simsii HOM05D001997 ORTHO05D005560 1.2e-41 173.3 117 81.2
Actinidia11445 Actinidia chinensis HOM05D001997 ORTHO05D005560 1.5e-41 172.9 120 79.2
CSS0006622 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 2.0e-41 172.6 121 76.9
CSS0005460 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 2.6e-41 172.2 122 77.0
CSS0042570 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 2.6e-41 172.2 122 77.0
Dinv33196 Davidia involucrata HOM05D001997 ORTHO05D005560 2.6e-41 172.2 123 78.0
HanXRQChr14g0432491 Helianthus annuus HOM05D001997 ORTHO05D005560 7.6e-41 170.6 116 75.0
Hma1.2p1_0855F.1_g228990 Hydrangea macrophylla HOM05D001997 ORTHO05D005560 6.4e-40 167.5 126 72.2
CiPaw.02G100900 Carya illinoinensis HOM05D001997 ORTHO05D005560 8.4e-40 167.2 116 79.3
Eucgr.A00017 Eucalyptus grandis HOM05D001997 ORTHO05D005560 8.4e-40 167.2 110 78.2
PGR004G0495 Punica granatum HOM05D001997 ORTHO05D005560 1.1e-39 166.8 117 76.1
Duzib268G1453 Durio zibethinus HOM05D001997 ORTHO05D005560 1.4e-39 166.4 116 77.6
QL10p053341 Quercus lobata HOM05D001997 ORTHO05D005560 2.4e-39 165.6 116 77.6
Gohir.D02G109200 Gossypium hirsutum HOM05D001997 ORTHO05D005560 1.6e-38 162.9 120 75.0
Gorai.005G124400 Gossypium raimondii HOM05D001997 ORTHO05D005560 1.6e-38 162.9 120 75.0
QL10p054519 Quercus lobata HOM05D001997 ORTHO05D005560 1.6e-38 162.9 116 76.7
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 2.1e-38 162.5 122 74.6
TAR362G0574 Trochodendron aralioides HOM05D001997 ORTHO05D005560 2.7e-38 162.2 124 71.0
Aqoxy3G00613 Aquilegia oxysepala HOM05D001997 ORTHO05D005560 3.5e-38 161.8 119 75.6
Thecc.04G168000 Theobroma cacao HOM05D001997 ORTHO05D005560 3.5e-38 161.8 100 81.0
TWI15G0247 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 3.5e-38 161.8 116 74.1
Manes.16G067100 Manihot esculenta HOM05D001997 ORTHO05D005560 6.0e-38 161.0 120 73.3
LjContig00312_ERROPOS870357g0002022 Lotus japonicus HOM05D001997 ORTHO05D005560 7.9e-38 160.6 122 73.0
Gohir.A02G091400 Gossypium hirsutum HOM05D001997 ORTHO05D005560 1.3e-37 159.8 120 74.2
Manes.04G036800 Manihot esculenta HOM05D001997 ORTHO05D005560 1.8e-37 159.5 120 72.5
TWI63G1293 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 1.8e-37 159.5 116 73.3
Lsat_1_v5_gn_3_138061 Lactuca sativa HOM05D001997 ORTHO05D005560 3.0e-37 158.7 96 80.2
VMungo1127G1119 Vigna mungo HOM05D001997 ORTHO05D005560 3.0e-37 158.7 116 75.0
Ciclev10022891m.g Citrus clementina HOM05D001997 ORTHO05D005560 3.9e-37 158.3 108 75.9
Glyma.09G232500 Glycine max HOM05D001997 ORTHO05D005560 3.9e-37 158.3 116 75.0
Lalb_Chr02g0159681 Lupinus albus HOM05D001997 ORTHO05D005560 3.9e-37 158.3 120 71.7
Phvul.011G004600 Phaseolus vulgaris HOM05D001997 ORTHO05D005560 3.9e-37 158.3 116 75.0
TPR.G15125 Trifolium pratense HOM05D001997 ORTHO05D005560 3.9e-37 158.3 116 74.1
arahy.Tifrunner.gnm1.ann1.U4TVD9 Arachis hypogaea HOM05D001997 ORTHO05D005560 5.1e-37 157.9 116 74.1
QL04p073793 Quercus lobata HOM05D001997 ORTHO05D005560 6.7e-37 157.5 118 75.4
MELO3C002757.2 Cucumis melo HOM05D001997 ORTHO05D005560 8.7e-37 157.1 117 72.6
CsaV3_1G036760 Cucumis sativus L. HOM05D001997 ORTHO05D005560 8.7e-37 157.1 117 72.6
Medtr3g110098 Medicago truncatula HOM05D001997 ORTHO05D005560 1.5e-36 156.4 116 73.3
arahy.Tifrunner.gnm1.ann1.HCPJ2X Arachis hypogaea HOM05D001997 ORTHO05D005560 1.9e-36 156.0 116 73.3
Atru.chr4.1389 Acer truncatum HOM05D001997 ORTHO05D005560 2.5e-36 155.6 114 74.6
MD15G1424200 Malus domestica HOM05D001997 ORTHO05D005560 2.5e-36 155.6 117 72.6
Psat2g000880 Pisum sativum HOM05D001997 ORTHO05D005560 2.5e-36 155.6 116 72.4
Prupe.1G570200 Prunus persica HOM05D001997 ORTHO05D005560 2.5e-36 155.6 117 71.8
Sc01g0006970 Simmondsia chinensis HOM05D001997 ORTHO05D005560 2.5e-36 155.6 122 69.7
ClCG03G006590 Citrullus lanatus HOM05D001997 ORTHO05D005560 4.3e-36 154.8 117 71.8
arahy.Tifrunner.gnm1.ann1.NB68NZ Arachis hypogaea HOM05D001997 ORTHO05D005560 5.6e-36 154.5 116 73.3
Manes.11G130400 Manihot esculenta HOM05D001997 ORTHO05D005560 5.6e-36 154.5 119 70.6
Potri.013G125200 Populus trichocarpa HOM05D001997 ORTHO05D005560 5.6e-36 154.5 117 70.9
AUR62026225 Chenopodium quinoa HOM05D001997 ORTHO05D005560 9.6e-36 153.7 117 72.6
Ah.07g202650 Amaranthus hybridus HOM05D001997 ORTHO05D005560 1.3e-35 153.3 118 69.5
FAN13G1284 Fragaria x ananassa HOM05D001997 ORTHO05D005560 1.3e-35 153.3 100 78.0
Nn1g09687 Nelumbo nucifera HOM05D001997 ORTHO05D005560 1.6e-35 152.9 121 69.4
CiPaw.01G171400 Carya illinoinensis HOM05D001997 ORTHO05D005560 2.8e-35 152.1 119 71.4
FvH4_5g22590 Fragaria vesca HOM05D001997 ORTHO05D005560 2.8e-35 152.1 99 77.8
FAN04G0119 Fragaria x ananassa HOM05D001997 ORTHO05D005560 2.8e-35 152.1 99 77.8
FAN08G3153 Fragaria x ananassa HOM05D001997 ORTHO05D005560 2.8e-35 152.1 99 77.8
FAN18G2915 Fragaria x ananassa HOM05D001997 ORTHO05D005560 2.8e-35 152.1 99 77.8
AL4G42460 Arabidopsis lyrata HOM05D001997 ORTHO05D005560 4.8e-35 151.4 118 68.6
AUR62026408 Chenopodium quinoa HOM05D001997 ORTHO05D005560 4.8e-35 151.4 102 75.5
Carub.0004s2617 Capsella rubella HOM05D001997 ORTHO05D005560 6.2e-35 151.0 118 68.6
THA.LOC104802323 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 8.1e-35 150.6 122 67.2
BcaB06g29333 Brassica carinata HOM05D001997 ORTHO05D005560 1.1e-34 150.2 114 70.2
CSS0004625 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 1.1e-34 150.2 120 66.7
RcHm_v2.0_Chr7g0210361 Rosa chinensis HOM05D001997 ORTHO05D005560 1.1e-34 150.2 99 76.8
BcaB01g03370 Brassica carinata HOM05D001997 ORTHO05D005560 1.4e-34 149.8 113 69.0
BolC4t22094H Brassica oleracea HOM05D001997 ORTHO05D005560 1.4e-34 149.8 111 70.3
Lj3g0018936 Lotus japonicus HOM05D001997 ORTHO05D005560 1.4e-34 149.8 122 69.7
C04p04630 Brassica napus HOM05D001997 ORTHO05D005560 1.8e-34 149.4 111 70.3
CANSAT56G1366 Cannabis sativa HOM05D001997 ORTHO05D005560 1.8e-34 149.4 110 72.7
BcaB02g08911 Brassica carinata HOM05D001997 ORTHO05D005560 2.4e-34 149.1 110 70.9
BcaC02g12374 Brassica carinata HOM05D001997 ORTHO05D005560 2.4e-34 149.1 110 70.9
CANSAT56G3121 Cannabis sativa HOM05D001997 ORTHO05D005560 4.0e-34 148.3 110 71.8
HPP92_004665 Vanilla planifolia HOM05D001997 ORTHO05D005560 5.3e-34 147.9 110 69.1
BraA03t11647Z Brassica rapa HOM05D001997 ORTHO05D005560 9.0e-34 147.1 103 72.8
BraA05t19377Z Brassica rapa HOM05D001997 ORTHO05D005560 9.0e-34 147.1 111 69.4
MD08G1231600 Malus domestica HOM05D001997 ORTHO05D005560 9.0e-34 147.1 117 69.2
Sed0015466 Sechium edule HOM05D001997 ORTHO05D005560 9.0e-34 147.1 117 67.5
Sp4g25740 Schrenkiella parvula HOM05D001997 ORTHO05D005560 1.2e-33 146.7 117 67.5
Aa31LG1G25360 Aethionema arabicum HOM05D001997 ORTHO05D005560 1.5e-33 146.4 118 67.8
CARHR138820 Cardamine hirsuta HOM05D001997 ORTHO05D005560 1.5e-33 146.4 100 74.0
A04p32920 Brassica napus HOM05D001997 ORTHO05D005560 2.0e-33 146.0 122 65.6
A05p03900 Brassica napus HOM05D001997 ORTHO05D005560 2.6e-33 145.6 122 64.8
THA.LOC104819704 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 2.6e-33 145.6 117 67.5
Ah.13g073580 Amaranthus hybridus HOM05D000242 ORTHO05D005560 3.4e-33 145.2 98 73.5
EL10Ac3g06063 Beta vulgaris HOM05D001997 ORTHO05D005560 3.4e-33 145.2 120 65.8
A03p24380 Brassica napus HOM05D001997 ORTHO05D005560 3.4e-33 145.2 102 71.6
BraA04t18752Z Brassica rapa HOM05D001997 ORTHO05D005560 3.4e-33 145.2 123 66.7
C03p29060 Brassica napus HOM05D001997 ORTHO05D005560 4.5e-33 144.8 123 65.0
BolC3t15260H Brassica oleracea HOM05D001997 ORTHO05D005560 4.5e-33 144.8 123 65.0
Thhalv10001685m.g Eutrema salsugineum HOM05D001997 ORTHO05D005560 9.9e-33 143.7 118 65.3
BcaC01g05223 Brassica carinata HOM05D001997 ORTHO05D005560 1.7e-32 142.9 118 66.1
PSO017G7267 Papaver somniferum HOM05D001997 ORTHO05D005560 3.8e-32 141.7 118 65.3
DCAR_003034 Daucus carota HOM05D001997 ORTHO05D005560 1.4e-31 139.8 108 72.2
PSO675G0853 Papaver somniferum HOM05D001997 ORTHO05D005560 3.2e-31 138.7 118 65.3
ATR0075G039 Amborella trichopoda HOM05D001997 ORTHO05D005560 4.2e-31 138.3 125 61.6
Glyma.12G004000 Glycine max HOM05D001997 ORTHO05D005560 7.1e-31 137.5 102 73.5
Cpa.g.sc9.355 Carica papaya HOM05D001997 ORTHO05D005560 3.5e-30 135.2 106 68.9
Os04g0623700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D005560 3.5e-30 135.2 104 65.4
MBI08_g25560_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D005560 4.6e-30 134.8 111 64.0
Zm00001eb070260 Zea mays HOM05D001997 ORTHO05D005560 6.0e-30 134.4 127 59.1
AT2G43640 Arabidopsis thaliana HOM05D001997 ORTHO05D005560 9.6e-28 127.1 118 60.2
FAN18G1136 Fragaria x ananassa HOM05D001997 ORTHO05D005560 1.3e-27 126.7 85 75.3
GSVIVG01038131001 Vitis vinifera HOM05D001997 ORTHO05D005560 2.8e-27 125.6 102 68.6
Atru.chr12.1238 Acer truncatum HOM05D001997 ORTHO05D005560 3.1e-26 122.1 100 64.0
MSTRG.24567 Avicennia marina HOM05D001997 ORTHO05D005560 3.1e-26 122.1 69 85.5
Oeu007674.1 Olea europaea HOM05D001997 ORTHO05D005560 2.0e-25 119.4 68 83.8
C04p70600 Brassica napus HOM05D001997 ORTHO05D005560 2.2e-24 115.9 106 59.4
arahy.Tifrunner.gnm1.ann1.B0USY3 Arachis hypogaea HOM05D001997 ORTHO05D005560 1.0e-21 107.1 85 69.4
TAR633G1661 Trochodendron aralioides HOM05D001997 ORTHO05D005560 1.3e-21 106.7 93 67.7
Pp3c22_3390 Physcomitrium patens HOM05D001997 ORTHO05D005560 3.9e-21 105.1 108 52.8
Mapoly0092s0041 Marchantia polymorpha HOM05D001997 ORTHO05D005560 1.5e-20 103.2 102 52.9
Sc18g0007150 Simmondsia chinensis HOM05D001997 ORTHO05D005560 1.5e-20 103.2 67 76.1
CBR_g30248 Chara braunii HOM05D001997 ORTHO05D005560 4.3e-20 101.7 97 54.6
Hund12390 Selenicereus undatus HOM05D001997 ORTHO05D005560 9.7e-20 100.5 65 76.9
BcaC02g07159 Brassica carinata HOM05D001997 ORTHO05D005560 1.6e-19 99.8 91 60.4
BolC4t28562H Brassica oleracea HOM05D001997 ORTHO05D005560 1.6e-19 99.8 91 60.4
CAN.G136.16 Capsicum annuum HOM05D001997 ORTHO05D005560 4.8e-19 98.2 53 90.6
Cc10_g09000 Coffea canephora HOM05D001997 ORTHO05D005560 4.8e-19 98.2 56 85.7
arahy.Tifrunner.gnm1.ann1.9S24RV Arachis hypogaea HOM05D001997 ORTHO05D005560 8.2e-19 97.4 70 72.9
CDE07G0374 Ceratophyllum demersum HOM05D001997 ORTHO05D005560 1.1e-18 97.1 63 71.4
arahy.Tifrunner.gnm1.ann1.IP5VZQ Arachis hypogaea HOM05D001997 ORTHO05D005560 1.9e-15 86.3 74 64.9
arahy.Tifrunner.gnm1.ann1.TRD1UF Arachis hypogaea HOM05D001997 ORTHO05D005560 3.6e-14 82.0 73 63.0
arahy.Tifrunner.gnm1.ann1.F176HW Arachis hypogaea HOM05D001997 ORTHO05D005560 7.9e-14 80.9 85 57.6
Psat6g024000 Pisum sativum HOM05D001997 ORTHO05D005560 6.7e-13 77.8 122 45.1
Cre01.g031200 Chlamydomonas reinhardtii HOM05D001997 ORTHO05D005560 3.3e-12 75.5 102 43.1
arahy.Tifrunner.gnm1.ann1.E4AJF3 Arachis hypogaea HOM05D001997 ORTHO05D005560 7.4e-12 74.3 67 61.2
CARHR119270 Cardamine hirsuta HOM05D001997 ORTHO05D005560 1.3e-11 73.6 56 64.3
AagrBONN_evm.TU.Sc2ySwM_228.2619 Anthoceros agrestis HOM05D001997 ORTHO05D005560 2.2e-11 72.8 74 50.0
MCO03G443 Micromonas commoda HOM05D001997 ORTHO05D005560 6.3e-11 71.2 113 39.8
PRCOL_00005629 Prasinoderma coloniale HOM05D001997 ORTHO05D005560 8.2e-11 70.9 114 42.1
Hund03190 Selenicereus undatus HOM05D000031 ORTHO05D000030 1.5e-09 66.6 59 55.9
arahy.Tifrunner.gnm1.ann1.FLH3LF Arachis hypogaea HOM05D001997 ORTHO05D005560 2.6e-09 65.9 82 51.2
EL10Ac5g10857 Beta vulgaris HOM05D001714 ORTHO05D001932 3.4e-09 65.5 52 75.0
EL10Ac7g17594 Beta vulgaris HOM05D001714 ORTHO05D001932 6.5e-08 61.2 64 57.8
Glyma.10G156400 Glycine max HOM05D001997 ORTHO05D005560 1.9e-07 59.7 49 69.4
arahy.Tifrunner.gnm1.ann1.XW4Y8U Arachis hypogaea HOM05D001997 ORTHO05D005560 9.4e-07 57.4 74 48.6
SGA_v2.0_scaffold13G06711 Striga asiatica HOM05D001997 ORTHO05D005560 9.4e-07 57.4 31 83.9
EL10Ac1g01241 Beta vulgaris HOM05D001714 ORTHO05D005560 4.7e-06 55.1 69 50.7
Hund12391 Selenicereus undatus HOM05D001997 ORTHO05D005560 7.9e-06 54.3 44 61.4


User provided reference genes

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