Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1028.1 Capsicum annuum HOM05D000940 ORTHO05D021529 2.5e-70 268.9 153 100.0
SpUn0049_0010 Schrenkiella parvula HOM05D000940 ORTHO05D000782 4.1e-17 92.0 90 55.6
HPP92_009957 Vanilla planifolia HOM05D000940 ORTHO05D000782 5.4e-17 91.7 130 37.7
ECA232G4945 Erigeron canadensis HOM05D000940 ORTHO05D000782 5.1e-15 85.1 77 57.1
vmacro05940 Vaccinium macrocarpon HOM05D000940 ORTHO05D000782 1.5e-14 83.6 76 56.6
Rhsim10G0008500 Rhododendron simsii HOM05D000940 ORTHO05D000782 5.6e-14 81.6 76 56.6
Actinidia05922 Actinidia chinensis HOM05D000940 ORTHO05D000782 1.2e-13 80.5 75 54.7
CARHR199130 Cardamine hirsuta HOM05D000940 ORTHO05D000782 1.2e-13 80.5 142 35.2
arahy.Tifrunner.gnm1.ann1.P1PKKY Arachis hypogaea HOM05D000940 ORTHO05D000782 8.1e-13 77.8 105 41.0
arahy.Tifrunner.gnm1.ann1.VF0DTM Arachis hypogaea HOM05D000940 ORTHO05D021529 8.1e-13 77.8 105 41.0
arahy.Tifrunner.gnm1.ann1.WAGS40 Arachis hypogaea HOM05D000940 ORTHO05D021529 8.1e-13 77.8 105 41.0
PSO063G5595 Papaver somniferum HOM05D000940 ORTHO05D000782 8.1e-13 77.8 76 51.3
CAN.G1491.1 Capsicum annuum HOM05D000940 ORTHO05D000782 3.1e-12 75.9 60 91.7
TPR.G7532 Trifolium pratense HOM05D000940 ORTHO05D000782 3.1e-12 75.9 78 50.0
TAR622G0686 Trochodendron aralioides HOM05D000940 ORTHO05D000782 5.2e-12 75.1 75 52.0
Sp6g29820 Schrenkiella parvula HOM05D000940 ORTHO05D000782 1.2e-11 73.9 77 53.2
AL6G24880 Arabidopsis lyrata HOM05D000940 ORTHO05D000782 2.0e-11 73.2 77 54.5
Thhalv10012902m.g Eutrema salsugineum HOM05D000940 ORTHO05D000782 2.0e-11 73.2 76 52.6
Sopen02g017170 Solanum pennellii HOM05D000940 ORTHO05D000782 2.0e-11 73.2 60 91.7
AT5G14210 Arabidopsis thaliana HOM05D000940 ORTHO05D000782 2.6e-11 72.8 76 55.3
Glyma.19G074900 Glycine max HOM05D000940 ORTHO05D000782 2.6e-11 72.8 75 49.3
Psat1g084920 Pisum sativum HOM05D000940 ORTHO05D000782 2.6e-11 72.8 77 46.8
ECA238G4391 Erigeron canadensis HOM05D000940 ORTHO05D000782 3.4e-11 72.4 69 50.7
Aa31LG11G15000 Aethionema arabicum HOM05D000940 ORTHO05D000782 4.4e-11 72.0 76 53.9
COL.COLO4_08742 Corchorus olitorius HOM05D000940 ORTHO05D000782 5.8e-11 71.6 75 50.7
Prupe.3G303100 Prunus persica HOM05D000940 ORTHO05D000782 5.8e-11 71.6 75 50.7
Solyc02g068060.3 Solanum lycopersicum HOM05D000940 ORTHO05D000782 7.6e-11 71.2 60 90.0
BcaB01g05302 Brassica carinata HOM05D002662 ORTHO05D000782 9.9e-11 70.9 84 47.6
BcaB01g05303 Brassica carinata HOM05D000940 ORTHO05D000782 1.3e-10 70.5 75 50.7
Medtr3g088930 Medicago truncatula HOM05D000940 ORTHO05D000782 1.3e-10 70.5 79 48.1
HanXRQChr07g0198301 Helianthus annuus HOM05D000940 ORTHO05D000782 1.7e-10 70.1 75 50.7
Medtr6g023390 Medicago truncatula HOM05D000940 ORTHO05D000782 1.7e-10 70.1 75 48.0
Cpa.g.sc130.2 Carica papaya HOM05D000940 ORTHO05D000782 2.9e-10 69.3 77 46.8
Lj7C609G18 Lonicera japonica HOM05D000940 ORTHO05D000782 3.8e-10 68.9 71 52.1
Nitab4.5_0002911g0030 Nicotiana tabacum HOM05D000940 ORTHO05D000782 4.9e-10 68.6 59 84.7
Hma1.2p1_0279F.1_g112570 Hydrangea macrophylla HOM05D000940 ORTHO05D000782 8.4e-10 67.8 63 54.0
Duzib187G1426 Durio zibethinus HOM05D000940 ORTHO05D000782 1.1e-09 67.4 70 51.4
arahy.Tifrunner.gnm1.ann1.T1FE81 Arachis hypogaea HOM05D000940 ORTHO05D000782 1.4e-09 67.0 90 43.3
PGSC0003DMG400006923 Solanum tuberosum HOM05D000940 ORTHO05D000782 1.4e-09 67.0 59 88.1
TWI56G1208 Tripterygium wilfordii HOM05D000940 ORTHO05D000782 1.9e-09 66.6 76 48.7
Dinv25672 Davidia involucrata HOM05D000940 ORTHO05D000782 2.4e-09 66.2 60 56.7
Hma1.2p1_0014F.1_g009680 Hydrangea macrophylla HOM05D000940 ORTHO05D000782 3.2e-09 65.9 74 48.6
Peaxi162Scf00881g00225 Petunia axillaris HOM05D000940 ORTHO05D000782 3.2e-09 65.9 58 87.9
Thecc.04G030900 Theobroma cacao HOM05D000940 ORTHO05D000782 3.2e-09 65.9 69 50.7
Cfa007249 Carpinus fangiana HOM05D000940 ORTHO05D000782 4.1e-09 65.5 62 54.8
Nitab4.5_0000040g0430 Nicotiana tabacum HOM05D000940 ORTHO05D000782 4.1e-09 65.5 58 84.5
Ciclev10018967m.g Citrus clementina HOM05D000940 ORTHO05D000782 7.1e-09 64.7 76 44.7
Manes.17G105400 Manihot esculenta HOM05D000940 ORTHO05D000782 7.1e-09 64.7 65 50.8
VMungo0464G0029 Vigna mungo HOM05D000940 ORTHO05D000782 9.2e-09 64.3 70 48.6
A06p43490 Brassica napus HOM05D000940 ORTHO05D000782 1.2e-08 63.9 98 36.7
Nn4g22383 Nelumbo nucifera HOM05D000940 ORTHO05D000782 1.2e-08 63.9 69 49.3
MELO3C002351.2 Cucumis melo HOM05D000940 ORTHO05D000782 1.6e-08 63.5 78 44.9
Manes.15G158700 Manihot esculenta HOM05D000940 ORTHO05D000782 1.6e-08 63.5 65 49.2
Duzib147G0751 Durio zibethinus HOM05D000940 ORTHO05D000782 2.1e-08 63.2 70 48.6
Nitab4.5_0007150g0010 Nicotiana tabacum HOM05D000940 ORTHO05D000782 2.1e-08 63.2 60 58.3
BolC7t43847H Brassica oleracea HOM05D000940 ORTHO05D000782 2.7e-08 62.8 98 37.8
CAN.G473.82 Capsicum annuum HOM05D000940 ORTHO05D000782 4.6e-08 62.0 58 60.3
Haze_14843 Corylus avellana HOM05D000940 ORTHO05D000782 4.6e-08 62.0 60 53.3
Sc03g0006710 Simmondsia chinensis HOM05D000940 ORTHO05D000782 4.6e-08 62.0 61 49.2
TAR374G1469 Trochodendron aralioides HOM05D000940 ORTHO05D000782 6.0e-08 61.6 66 48.5
Lsat_1_v5_gn_2_94020 Lactuca sativa HOM05D000940 ORTHO05D000782 7.8e-08 61.2 60 53.3
Sed0008364 Sechium edule HOM05D000940 ORTHO05D000782 7.8e-08 61.2 82 42.7
arahy.Tifrunner.gnm1.ann1.TDL8AI Arachis hypogaea HOM05D000166 ORTHO05D000812 1.0e-07 60.8 133 28.6
CiPaw.04G035000 Carya illinoinensis HOM05D000940 ORTHO05D000782 1.0e-07 60.8 60 53.3
Ca_24510_v3 Cicer arietinum L. HOM05D000940 ORTHO05D000782 1.0e-07 60.8 78 46.2
FAN04G1277 Fragaria x ananassa HOM05D000940 ORTHO05D000782 1.0e-07 60.8 83 42.2
Nitab4.5_0002887g0080 Nicotiana tabacum HOM05D000940 ORTHO05D000782 1.0e-07 60.8 60 56.7
QL02p071931 Quercus lobata HOM05D000940 ORTHO05D000782 1.0e-07 60.8 60 51.7
MD09G1014600 Malus domestica HOM05D000940 ORTHO05D000782 1.3e-07 60.5 60 50.0
Migut.I00514 Erythranthe guttata HOM05D000940 ORTHO05D000782 1.7e-07 60.1 78 43.6
Gohir.D12G191100 Gossypium hirsutum HOM05D000940 ORTHO05D000782 1.7e-07 60.1 67 47.8
arahy.Tifrunner.gnm1.ann1.9M10FC Arachis hypogaea HOM05D000940 ORTHO05D000782 2.3e-07 59.7 70 44.3
Cc07_g00630 Coffea canephora HOM05D000940 ORTHO05D000782 2.3e-07 59.7 58 75.9
COL.COLO4_07053 Corchorus olitorius HOM05D000053 ORTHO05D000035 2.3e-07 59.7 146 35.6
Eucgr.I01661 Eucalyptus grandis HOM05D000940 ORTHO05D000782 2.3e-07 59.7 65 49.2
Lj1g0028170 Lotus japonicus HOM05D000940 ORTHO05D000782 2.3e-07 59.7 78 43.6
PGR142G2204 Punica granatum HOM05D000940 ORTHO05D000782 2.3e-07 59.7 62 48.4
SGA_v2.0_scaffold161G37780 Striga asiatica HOM05D000940 ORTHO05D000782 2.3e-07 59.7 97 34.0
Aqoxy5G03449 Aquilegia oxysepala HOM05D000940 ORTHO05D000782 3.0e-07 59.3 61 49.2
AT3G24900 Arabidopsis thaliana HOM05D000053 ORTHO05D000035 3.0e-07 59.3 156 28.2
CSS0005703 Camellia sinensis var. sinensis HOM05D000940 ORTHO05D000782 3.0e-07 59.3 77 42.9
Carub.0006s1241 Capsella rubella HOM05D000940 ORTHO05D000782 3.0e-07 59.3 66 51.5
CARHR259020 Cardamine hirsuta HOM05D000166 ORTHO05D000812 3.0e-07 59.3 87 36.8
FAN18G0898 Fragaria x ananassa HOM05D000940 ORTHO05D000782 3.0e-07 59.3 80 43.8
MBI08_g37187_MAGBIO Magnolia biondii HOM05D000940 ORTHO05D000782 3.0e-07 59.3 77 42.9
HPP92_012268 Vanilla planifolia HOM05D000029 ORTHO05D002500 3.0e-07 59.3 64 48.4
FAN05G1769 Fragaria x ananassa HOM05D000940 ORTHO05D000782 3.9e-07 58.9 61 50.8
PSO782G4599 Papaver somniferum HOM05D000940 ORTHO05D000782 3.9e-07 58.9 62 46.8
QL10p004249 Quercus lobata HOM05D000940 ORTHO05D000782 3.9e-07 58.9 74 41.9
RcHm_v2.0_Chr7g0190561 Rosa chinensis HOM05D000940 ORTHO05D000782 3.9e-07 58.9 78 43.6
BcaB02g06491 Brassica carinata HOM05D000940 ORTHO05D000782 5.1e-07 58.5 107 33.6
BraA02t07300Z Brassica rapa HOM05D000166 ORTHO05D000812 5.1e-07 58.5 183 27.3
CiPaw.03G053100 Carya illinoinensis HOM05D000940 ORTHO05D000782 5.1e-07 58.5 60 50.0
FvH4_6g53110 Fragaria vesca HOM05D000940 ORTHO05D000782 5.1e-07 58.5 61 50.8
FAN08G1484 Fragaria x ananassa HOM05D000940 ORTHO05D000782 5.1e-07 58.5 78 43.6
FAN09G3064 Fragaria x ananassa HOM05D000940 ORTHO05D000782 5.1e-07 58.5 61 50.8
FAN13G2314 Fragaria x ananassa HOM05D000940 ORTHO05D000782 5.1e-07 58.5 78 43.6
FAN14G5311 Fragaria x ananassa HOM05D000940 ORTHO05D000782 5.1e-07 58.5 61 50.8
Oeu011953.1 Olea europaea HOM05D000940 ORTHO05D000782 5.1e-07 58.5 58 51.7
Oeu056006.2 Olea europaea HOM05D000940 ORTHO05D000782 5.1e-07 58.5 74 43.2
Potri.001G333300 Populus trichocarpa HOM05D000940 ORTHO05D000782 5.1e-07 58.5 61 50.8
AT3G24982 Arabidopsis thaliana HOM05D000053 ORTHO05D000035 6.6e-07 58.2 153 28.1
C05p12210 Brassica napus HOM05D000940 ORTHO05D000782 6.6e-07 58.2 95 36.8
CsaV3_1G009530 Cucumis sativus L. HOM05D000940 ORTHO05D000782 6.6e-07 58.2 75 42.7
Migut.H00009 Erythranthe guttata HOM05D000940 ORTHO05D000782 6.6e-07 58.2 58 53.4
FvH4_5g07890 Fragaria vesca HOM05D000940 ORTHO05D000782 6.6e-07 58.2 78 43.6
FAN25G0019 Fragaria x ananassa HOM05D000021 ORTHO05D000010 6.6e-07 58.2 147 31.3
Glyma.05G075800 Glycine max HOM05D000940 ORTHO05D000782 6.6e-07 58.2 62 48.4
Lalb_Chr08g0237061 Lupinus albus HOM05D000940 ORTHO05D000782 6.6e-07 58.2 79 40.5
MD04G1183100 Malus domestica HOM05D000166 ORTHO05D000812 6.6e-07 58.2 140 29.3
Atru.chr4.2514 Acer truncatum HOM05D000106 ORTHO05D003154 8.6e-07 57.8 64 45.3
arahy.Tifrunner.gnm1.ann1.4T4T3L Arachis hypogaea HOM05D000940 ORTHO05D000782 8.6e-07 57.8 61 49.2
arahy.Tifrunner.gnm1.ann1.QBE51F Arachis hypogaea HOM05D000940 ORTHO05D000782 8.6e-07 57.8 61 49.2
BraA06t24222Z Brassica rapa HOM05D000940 ORTHO05D000782 8.6e-07 57.8 99 35.4
Haze_12637 Corylus avellana HOM05D000053 ORTHO05D000035 8.6e-07 57.8 146 29.5
PGSC0003DMG402020263 Solanum tuberosum HOM05D000940 ORTHO05D000782 8.6e-07 57.8 58 56.9
CiPaw.11G009500 Carya illinoinensis HOM05D000940 ORTHO05D000782 1.1e-06 57.4 72 41.7
FAN02G2284 Fragaria x ananassa HOM05D000940 ORTHO05D000782 1.1e-06 57.4 61 49.2
Thecc.02G158400 Theobroma cacao HOM05D000311 ORTHO05D000183 1.1e-06 57.4 142 31.0
Atru.chr9.1088 Acer truncatum HOM05D000940 ORTHO05D000782 1.5e-06 57.0 76 43.4
MSTRG.3090 Avicennia marina HOM05D000940 ORTHO05D000782 1.5e-06 57.0 59 52.5
Gohir.A12G188500 Gossypium hirsutum HOM05D000940 ORTHO05D000782 1.5e-06 57.0 66 47.0
Gorai.008G205300 Gossypium raimondii HOM05D000940 ORTHO05D000782 1.5e-06 57.0 64 46.9
PRCOL_00005591 Prasinoderma coloniale HOM05D000517 ORTHO05D016971 1.5e-06 57.0 150 30.0
BcaB08g36966 Brassica carinata HOM05D000940 ORTHO05D000782 1.9e-06 56.6 61 50.8
A10p24260 Brassica napus HOM05D000940 ORTHO05D000782 1.9e-06 56.6 62 50.0
DCAR_011312 Daucus carota HOM05D000940 ORTHO05D000782 1.9e-06 56.6 59 52.5
Glyma.15G124900 Glycine max HOM05D000166 ORTHO05D000812 1.9e-06 56.6 138 29.7
Phvul.002G177200 Phaseolus vulgaris HOM05D000106 ORTHO05D001887 1.9e-06 56.6 152 28.3
Phvul.004G055400 Phaseolus vulgaris HOM05D000940 ORTHO05D000782 1.9e-06 56.6 61 49.2
Sp1g12760 Schrenkiella parvula HOM05D000940 ORTHO05D000782 1.9e-06 56.6 107 32.7
Sed0004765 Sechium edule HOM05D000940 ORTHO05D000782 1.9e-06 56.6 76 42.1
Sed0010858 Sechium edule HOM05D000940 ORTHO05D000782 1.9e-06 56.6 60 50.0
Glyma.09G018800 Glycine max HOM05D000166 ORTHO05D000812 2.5e-06 56.2 83 33.7
MBI08_g29458_MAGBIO Magnolia biondii HOM05D000940 ORTHO05D000782 2.5e-06 56.2 77 41.6
QL03p053807 Quercus lobata HOM05D000071 ORTHO05D000029 2.5e-06 56.2 142 29.6
AT3G25020 Arabidopsis thaliana HOM05D000053 ORTHO05D000035 3.3e-06 55.8 153 27.5
BolC2t08458H Brassica oleracea HOM05D000311 ORTHO05D018764 3.3e-06 55.8 139 32.4
BolC5t29973H Brassica oleracea HOM05D000940 ORTHO05D000782 3.3e-06 55.8 95 36.8
Mapoly0145s0032 Marchantia polymorpha HOM05D000054 ORTHO05D011578 3.3e-06 55.8 121 34.7
Sabra16G0214600 Salix brachista HOM05D000940 ORTHO05D000782 3.3e-06 55.8 60 48.3
BraA09t42096Z Brassica rapa HOM05D000053 ORTHO05D000035 4.3e-06 55.5 138 30.4
CsaV3_2G034230 Cucumis sativus L. HOM05D000940 ORTHO05D000782 4.3e-06 55.5 59 47.5
Glyma.18G204400 Glycine max HOM05D000053 ORTHO05D000448 4.3e-06 55.5 124 33.1
Gohir.D07G233800 Gossypium hirsutum HOM05D000940 ORTHO05D000782 4.3e-06 55.5 65 47.7
Gorai.001G269200 Gossypium raimondii HOM05D000940 ORTHO05D000782 4.3e-06 55.5 65 47.7
SalBow1G7274 Salvia bowleyana HOM05D000940 ORTHO05D000782 4.3e-06 55.5 58 53.4
PGSC0003DMG400022067 Solanum tuberosum HOM05D000053 ORTHO05D000448 4.3e-06 55.5 109 34.9
THA.LOC104802379 Tarenaya hassleriana HOM05D000940 ORTHO05D000782 4.3e-06 55.5 64 50.0
BcaC05g25341 Brassica carinata HOM05D000940 ORTHO05D000782 5.6e-06 55.1 95 35.8
ClCG11G006980 Citrullus lanatus HOM05D000940 ORTHO05D000782 5.6e-06 55.1 59 47.5
DCAR_021769 Daucus carota HOM05D000940 ORTHO05D000782 5.6e-06 55.1 58 50.0
DCAR_021772 Daucus carota HOM05D000940 ORTHO05D000782 5.6e-06 55.1 58 50.0
Glyma.18G204500 Glycine max HOM05D000053 ORTHO05D000448 5.6e-06 55.1 122 32.8
Atru.chr6.2522 Acer truncatum HOM05D000940 ORTHO05D000782 7.3e-06 54.7 61 47.5
Carub.0003s2531 Capsella rubella HOM05D000053 ORTHO05D000035 7.3e-06 54.7 153 27.5
Ciclev10014358m.g Citrus clementina HOM05D000940 ORTHO05D000782 7.3e-06 54.7 63 47.6
Haze_12641 Corylus avellana HOM05D000053 ORTHO05D000035 7.3e-06 54.7 128 28.9
Glyma.18G204600 Glycine max HOM05D000053 ORTHO05D000448 7.3e-06 54.7 122 32.8
Lsat_1_v5_gn_4_185381 Lactuca sativa HOM05D000940 ORTHO05D000782 7.3e-06 54.7 58 51.7
Lju41C50T13 Lonicera japonica HOM05D000940 ORTHO05D000782 7.3e-06 54.7 66 47.0
MD05G1095300 Malus domestica HOM05D000053 ORTHO05D000448 7.3e-06 54.7 138 28.3
Mapoly0011s0079 Marchantia polymorpha HOM05D000106 ORTHO05D001887 7.3e-06 54.7 125 28.8
Medtr1g098980 Medicago truncatula HOM05D000071 ORTHO05D000029 7.3e-06 54.7 129 34.1
Nn3g16521 Nelumbo nucifera HOM05D000940 ORTHO05D000782 7.3e-06 54.7 61 44.3
TWI14G1224 Tripterygium wilfordii HOM05D000940 ORTHO05D000782 7.3e-06 54.7 74 39.2
GSVIVG01015618001 Vitis vinifera HOM05D000053 ORTHO05D000035 7.3e-06 54.7 149 32.2
Aqoxy3G01482 Aquilegia oxysepala HOM05D000940 ORTHO05D000782 9.6e-06 54.3 65 46.2
AL3G40730 Arabidopsis lyrata HOM05D000053 ORTHO05D000035 9.6e-06 54.3 153 27.5
AT3G25010 Arabidopsis thaliana HOM05D000053 ORTHO05D000035 9.6e-06 54.3 159 27.0
AT5G49760 Arabidopsis thaliana HOM05D000166 ORTHO05D000812 9.6e-06 54.3 100 30.0
Carub.0003s2534 Capsella rubella HOM05D000053 ORTHO05D000035 9.6e-06 54.3 153 27.5
Glyma.16G059700 Glycine max HOM05D000940 ORTHO05D000782 9.6e-06 54.3 61 45.9
SEGI_37714 Sequoiadendron giganteum HOM05D000071 ORTHO05D031207 9.6e-06 54.3 124 33.1
Sopen02g038620 Solanum pennellii HOM05D000940 ORTHO05D000782 9.6e-06 54.3 58 53.4
Thecc.10G132800 Theobroma cacao HOM05D000053 ORTHO05D000035 9.6e-06 54.3 158 29.1


User provided reference genes

Program Settings