Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1026.7 Capsicum annuum HOM05D006577 ORTHO05D008428 1.6e-212 743.4 504 100.0
Solyc08g075420.4 Solanum lycopersicum HOM05D006577 ORTHO05D008428 2.0e-178 630.2 419 91.9
Sopen08g024050 Solanum pennellii HOM05D006577 ORTHO05D008428 9.8e-178 627.9 419 88.8
Nitab4.5_0007095g0010 Nicotiana tabacum HOM05D006577 ORTHO05D008428 3.1e-163 579.7 335 90.4
Peaxi162Scf00193g00730 Petunia axillaris HOM05D006577 ORTHO05D008428 4.9e-161 572.4 393 85.0
Cc08_g05650 Coffea canephora HOM05D006577 ORTHO05D008428 1.9e-141 507.3 310 81.6
CiPaw.11G075200 Carya illinoinensis HOM05D006577 ORTHO05D008428 7.6e-138 495.4 337 77.4
CSS0014058 Camellia sinensis var. sinensis HOM05D006577 ORTHO05D008428 1.3e-137 494.6 315 78.4
GSVIVG01036870001 Vitis vinifera HOM05D006577 ORTHO05D008428 1.4e-136 491.1 313 79.2
Actinidia32789 Actinidia chinensis HOM05D006577 ORTHO05D008428 1.9e-136 490.7 314 77.7
Eucgr.D02560 Eucalyptus grandis HOM05D006577 ORTHO05D008428 5.4e-136 489.2 313 77.3
Prupe.1G353400 Prunus persica HOM05D006577 ORTHO05D008428 5.4e-136 489.2 318 76.7
Thecc.03G318900 Theobroma cacao HOM05D006577 ORTHO05D008428 1.2e-135 488.0 314 77.4
Manes.17G000100 Manihot esculenta HOM05D006577 ORTHO05D008428 4.6e-135 486.1 312 79.2
Cfa012291 Carpinus fangiana HOM05D000435 ORTHO05D000430 1.7e-134 484.2 311 79.4
COL.COLO4_11282 Corchorus olitorius HOM05D006577 ORTHO05D008428 3.0e-134 483.4 334 75.4
PGR042G0863 Punica granatum HOM05D006577 ORTHO05D008428 3.0e-134 483.4 312 78.2
Dinv41806 Davidia involucrata HOM05D006577 ORTHO05D008428 6.6e-134 482.3 316 77.8
MSTRG.1757 Avicennia marina HOM05D006577 ORTHO05D008428 1.1e-133 481.5 307 78.5
Lsat_1_v5_gn_6_17281 Lactuca sativa HOM05D006577 ORTHO05D008428 1.1e-133 481.5 308 78.2
FvH4_2g37380 Fragaria vesca HOM05D006577 ORTHO05D008428 3.3e-133 479.9 310 78.7
TPR.G29075 Trifolium pratense HOM05D006577 ORTHO05D008428 3.3e-133 479.9 311 77.8
MELO3C010522.2 Cucumis melo HOM05D006577 ORTHO05D008428 4.3e-133 479.6 313 78.9
TAR629G1131 Trochodendron aralioides HOM05D006577 ORTHO05D008428 5.6e-133 479.2 308 79.5
CsaV3_4G027910 Cucumis sativus L. HOM05D006577 ORTHO05D008428 7.3e-133 478.8 313 79.2
Gohir.A08G149500 Gossypium hirsutum HOM05D006577 ORTHO05D008428 1.6e-132 477.6 317 76.0
ECA233G0973 Erigeron canadensis HOM05D006577 ORTHO05D008428 2.8e-132 476.9 307 76.5
TWI73G0063 Tripterygium wilfordii HOM05D006577 ORTHO05D008428 3.6e-132 476.5 305 78.0
Gohir.D08G170500 Gossypium hirsutum HOM05D006577 ORTHO05D008428 4.8e-132 476.1 317 75.7
Psat1g131640 Pisum sativum HOM05D006577 ORTHO05D008428 6.2e-132 475.7 311 78.1
Gorai.004G178000 Gossypium raimondii HOM05D006577 ORTHO05D008428 1.1e-131 474.9 317 75.4
Oeu046783.1 Olea europaea HOM05D006577 ORTHO05D008428 1.1e-131 474.9 310 77.1
CANSAT35G0698 Cannabis sativa HOM05D006577 ORTHO05D008428 1.8e-131 474.2 308 77.6
MD08G1001400 Malus domestica HOM05D006577 ORTHO05D008428 2.4e-131 473.8 319 76.8
DCAR_030906 Daucus carota HOM05D006577 ORTHO05D008428 9.0e-131 471.9 338 73.1
RcHm_v2.0_Chr6g0304321 Rosa chinensis HOM05D006577 ORTHO05D008428 1.2e-130 471.5 308 78.2
Cpa.g.sc90.36 Carica papaya HOM05D006577 ORTHO05D008428 2.6e-130 470.3 314 75.2
arahy.Tifrunner.gnm1.ann1.0U4NMV Arachis hypogaea HOM05D006577 ORTHO05D008428 5.8e-130 469.2 309 73.8
arahy.Tifrunner.gnm1.ann1.Y0J304 Arachis hypogaea HOM05D006577 ORTHO05D008428 5.8e-130 469.2 309 73.8
Medtr2g040410 Medicago truncatula HOM05D006577 ORTHO05D008428 7.6e-130 468.8 310 75.2
Ca_13135_v3 Cicer arietinum L. HOM05D006577 ORTHO05D008428 1.3e-129 468.0 310 76.1
Migut.E01373 Erythranthe guttata HOM05D006577 ORTHO05D008428 2.9e-129 466.8 309 76.1
Haze_08434 Corylus avellana HOM05D006577 ORTHO05D008428 1.9e-128 464.2 330 73.6
EL10Ac8g19602 Beta vulgaris HOM05D006577 ORTHO05D008428 4.2e-128 463.0 306 75.2
Nn7g37388 Nelumbo nucifera HOM05D006577 ORTHO05D008428 4.2e-128 463.0 307 77.2
vmacro00091 Vaccinium macrocarpon HOM05D006577 ORTHO05D008428 5.4e-128 462.6 309 75.1
HanXRQChr07g0198411 Helianthus annuus HOM05D006577 ORTHO05D008428 1.2e-127 461.5 307 75.9
Carub.0007s2195 Capsella rubella HOM05D006577 ORTHO05D008428 2.1e-127 460.7 318 73.6
Lj2g0006155 Lotus japonicus HOM05D006577 ORTHO05D008428 2.1e-127 460.7 313 74.4
Lalb_Chr16g0380351 Lupinus albus HOM05D006577 ORTHO05D008428 2.1e-127 460.7 317 72.9
VMungo1215G3406 Vigna mungo HOM05D006577 ORTHO05D008428 2.1e-127 460.7 313 73.8
Glyma.01G154300 Glycine max HOM05D006577 ORTHO05D008428 3.5e-127 459.9 310 74.5
Thhalv10024821m.g Eutrema salsugineum HOM05D006577 ORTHO05D008428 4.6e-127 459.5 319 73.7
Sp7g17900 Schrenkiella parvula HOM05D006577 ORTHO05D008428 4.6e-127 459.5 318 73.6
AT4G19190 Arabidopsis thaliana HOM05D006577 ORTHO05D008428 6.0e-127 459.1 318 73.6
Rhsim11G0036700 Rhododendron simsii HOM05D006577 ORTHO05D008428 6.0e-127 459.1 306 73.9
A01p11160 Brassica napus HOM05D006577 ORTHO05D008428 7.9e-127 458.8 319 73.4
BraA01t01062Z Brassica rapa HOM05D006577 ORTHO05D008428 7.9e-127 458.8 319 73.4
Oeu015543.2 Olea europaea HOM05D006577 ORTHO05D008428 7.9e-127 458.8 339 69.6
Potri.004G236300 Populus trichocarpa HOM05D006577 ORTHO05D008428 7.9e-127 458.8 312 74.0
C01p13200 Brassica napus HOM05D006577 ORTHO05D008428 1.8e-126 457.6 319 73.0
FAN21G2299 Fragaria x ananassa HOM05D006577 ORTHO05D008428 1.8e-126 457.6 309 77.0
AUR62030109 Chenopodium quinoa HOM05D006577 ORTHO05D008428 3.0e-126 456.8 308 74.0
ClCG11G016060 Citrullus lanatus HOM05D006577 ORTHO05D008428 3.0e-126 456.8 337 72.4
Phvul.002G121300 Phaseolus vulgaris HOM05D006577 ORTHO05D008428 3.0e-126 456.8 311 73.3
AL7G34890 Arabidopsis lyrata HOM05D006577 ORTHO05D008428 3.9e-126 456.4 319 73.4
CDE01G0285 Ceratophyllum demersum HOM05D006577 ORTHO05D008428 1.1e-125 454.9 310 73.9
CARHR226070 Cardamine hirsuta HOM05D006577 ORTHO05D008428 1.5e-125 454.5 314 73.9
Ciclev10011516m.g Citrus clementina HOM05D006577 ORTHO05D008428 2.5e-125 453.8 308 74.0
Aa31LG6G1900 Aethionema arabicum HOM05D006577 ORTHO05D008428 7.4e-125 452.2 316 72.8
Glyma.11G090300 Glycine max HOM05D006577 ORTHO05D008428 2.1e-124 450.7 331 69.2
CDE12G0431 Ceratophyllum demersum HOM05D006577 ORTHO05D008428 3.7e-124 449.9 310 73.5
FAN27G1697 Fragaria x ananassa HOM05D006577 ORTHO05D008428 1.1e-123 448.4 342 71.1
BolC1t01294H Brassica oleracea HOM05D006577 ORTHO05D008428 1.4e-123 448.0 313 71.6
Aqoxy7G00896 Aquilegia oxysepala HOM05D006577 ORTHO05D008428 1.8e-123 447.6 306 72.9
FAN20G0322 Fragaria x ananassa HOM05D006577 ORTHO05D008428 4.0e-123 446.4 328 72.9
Atru.chr8.2629 Acer truncatum HOM05D006577 ORTHO05D008428 5.3e-123 446.0 309 71.5
unitig_37.g12910 Utricularia gibba HOM05D006577 ORTHO05D008428 3.4e-122 443.4 308 72.1
SEGI_36653 Sequoiadendron giganteum HOM05D006577 ORTHO05D008428 6.4e-121 439.1 313 70.9
HPP92_002488 Vanilla planifolia HOM05D006577 ORTHO05D008428 9.3e-120 435.3 290 74.8
ATR0568G043 Amborella trichopoda HOM05D006577 ORTHO05D008428 3.5e-119 433.3 322 70.2
BcaC09g51429 Brassica carinata HOM05D006577 ORTHO05D008428 3.9e-118 429.9 320 70.0
PSO502G0007 Papaver somniferum HOM05D006577 ORTHO05D008428 5.6e-117 426.0 314 69.1
PSO675G5955 Papaver somniferum HOM05D006577 ORTHO05D008428 3.7e-116 423.3 308 69.5
Sabra01G0180600 Salix brachista HOM05D006577 ORTHO05D008428 6.9e-115 419.1 379 60.9
THA.LOC104806196 Tarenaya hassleriana HOM05D006577 ORTHO05D008428 4.2e-112 409.8 316 69.3
Mapoly0190s0006 Marchantia polymorpha HOM05D006577 ORTHO05D008428 2.9e-105 387.1 301 66.1
QL12p004173 Quercus lobata HOM05D006577 ORTHO05D008428 5.0e-105 386.3 552 44.2
Lj3A8G25 Lonicera japonica HOM05D006577 ORTHO05D008428 2.5e-104 384.0 255 78.8
BcaC09g51430 Brassica carinata HOM05D006577 ORTHO05D008428 6.1e-103 379.4 268 73.1
SGA_v2.0_scaffold144G35886 Striga asiatica HOM05D006577 ORTHO05D008428 6.1e-103 379.4 277 72.2
SMO172G0042 Selaginella moellendorffii HOM05D006577 ORTHO05D008428 8.8e-102 375.6 288 66.3
Pp3c3_31660 Physcomitrium patens HOM05D006577 ORTHO05D008428 1.1e-101 375.2 304 62.5
Sc24g0001520 Simmondsia chinensis HOM05D006577 ORTHO05D008428 2.1e-87 327.8 223 74.4
CBR_g50314 Chara braunii HOM05D006577 ORTHO05D008428 1.0e-86 325.5 289 58.1
Sed0006082 Sechium edule HOM05D006577 ORTHO05D008428 4.8e-84 316.6 219 73.5
Zm00001eb227500 Zea mays HOM05D006577 ORTHO05D008428 3.2e-80 303.9 217 70.0
Ah.09g232390 Amaranthus hybridus HOM05D006577 ORTHO05D008428 2.5e-72 277.7 307 52.4
Lj3A28G25 Lonicera japonica HOM05D006577 ORTHO05D008428 6.8e-70 269.6 187 76.5
Hund17694 Selenicereus undatus HOM05D006577 ORTHO05D008428 1.2e-66 258.8 184 72.8
Hund17692 Selenicereus undatus HOM05D006577 ORTHO05D008428 1.8e-54 218.4 136 75.7
HanXRQChr07g0198421 Helianthus annuus HOM05D006577 ORTHO05D008428 1.0e-49 202.6 176 62.5
Lj9P453T24 Lonicera japonica HOM05D006577 ORTHO05D008428 1.3e-49 202.2 152 65.8
MCO15G109 Micromonas commoda HOM05D006577 ORTHO05D008428 3.5e-42 177.6 262 38.2
Nitab4.5_0000030g0480 Nicotiana tabacum HOM05D006577 ORTHO05D008428 1.2e-29 136.0 141 78.0
TPR.G30154 Trifolium pratense HOM05D006577 ORTHO05D008428 1.3e-28 132.5 187 48.1
CARHR123800 Cardamine hirsuta HOM05D006577 ORTHO05D008428 1.7e-28 132.1 69 85.5
Os06g0708900 Oryza sativa ssp. japonica HOM05D006577 ORTHO05D008428 1.9e-27 128.6 95 71.6
Zm00001eb395460 Zea mays HOM05D006577 ORTHO05D008428 3.2e-27 127.9 96 68.8
Zm00001eb339160 Zea mays HOM05D006577 ORTHO05D008428 9.2e-27 126.3 95 69.5
VMungo0251G3731 Vigna mungo HOM05D006577 ORTHO05D008428 3.5e-26 124.4 88 70.5
MD15G1000700 Malus domestica HOM05D006577 ORTHO05D008428 2.6e-21 108.2 115 59.1
FAN21G2282 Fragaria x ananassa HOM05D006577 ORTHO05D011051 4.9e-20 104.0 60 80.0
FAN21G2462 Fragaria x ananassa HOM05D006577 ORTHO05D011051 2.4e-19 101.7 60 78.3
FAN21G2626 Fragaria x ananassa HOM05D006577 ORTHO05D011051 6.6e-17 93.6 60 76.7
AUR62042461 Chenopodium quinoa HOM05D006577 ORTHO05D008428 1.6e-15 89.0 53 75.5
TPR.G13376 Trifolium pratense HOM05D006577 ORTHO05D008428 4.8e-15 87.4 67 70.1
Lj3A8T28 Lonicera japonica HOM05D006577 ORTHO05D008428 2.9e-12 78.2 48 75.0
Lj3C28T3 Lonicera japonica HOM05D006577 ORTHO05D008428 3.8e-12 77.8 48 75.0
FvH4_3g03932 Fragaria vesca HOM05D006577 ORTHO05D008428 8.4e-12 76.6 39 92.3
Cre06.g280700 Chlamydomonas reinhardtii HOM05D006577 ORTHO05D008428 1.1e-11 76.3 117 34.2
BcaB08g35318 Brassica carinata HOM05D006577 ORTHO05D008428 2.4e-11 75.1 57 63.2


User provided reference genes

Program Settings