Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1021.3 Capsicum annuum HOM05D005042 ORTHO05D006080 3.2e-285 984.6 551 100.0
PGSC0003DMG400028304 Solanum tuberosum HOM05D005042 ORTHO05D006080 5.5e-205 718.0 555 76.4
Sopen05g006670 Solanum pennellii HOM05D005042 ORTHO05D006080 8.0e-204 714.1 554 76.2
Solyc05g011930.4 Solanum lycopersicum HOM05D005042 ORTHO05D006080 1.0e-203 713.8 555 76.4
Nitab4.5_0012072g0010 Nicotiana tabacum HOM05D005042 ORTHO05D006080 5.2e-187 658.3 676 62.1
Nitab4.5_0000027g0180 Nicotiana tabacum HOM05D005042 ORTHO05D006080 1.4e-184 650.2 686 61.4
Peaxi162Scf00188g01341 Petunia axillaris HOM05D005042 ORTHO05D006080 7.3e-173 611.3 558 68.6
Dinv34024 Davidia involucrata HOM05D005042 ORTHO05D006080 3.5e-90 336.7 717 39.6
Cc11_g11610 Coffea canephora HOM05D005042 ORTHO05D006080 4.9e-84 316.2 626 41.1
CSS0000751 Camellia sinensis var. sinensis HOM05D005042 ORTHO05D006080 1.6e-79 301.2 723 38.6
Oeu024162.6 Olea europaea HOM05D005042 ORTHO05D006080 1.3e-76 291.6 659 36.9
Oeu057419.1 Olea europaea HOM05D005042 ORTHO05D006080 7.0e-75 285.8 657 39.4
CAN.G1021.10 Capsicum annuum HOM05D005042 ORTHO05D006080 5.0e-73 279.6 297 59.6
vmacro01299 Vaccinium macrocarpon HOM05D005042 ORTHO05D006080 6.8e-70 269.2 622 36.8
Oeu021807.1 Olea europaea HOM05D005042 ORTHO05D006080 6.4e-68 262.7 539 40.6
Lj3A1027T86 Lonicera japonica HOM05D005042 ORTHO05D006080 9.2e-67 258.8 686 37.3
Rhsim12G0071400 Rhododendron simsii HOM05D005042 ORTHO05D006080 7.8e-66 255.8 607 38.2
Migut.E00252 Erythranthe guttata HOM05D005042 ORTHO05D006080 1.0e-65 255.4 559 36.9
Actinidia07770 Actinidia chinensis HOM05D005042 ORTHO05D006080 6.8e-62 242.7 692 34.2
Thecc.02G323700 Theobroma cacao HOM05D005042 ORTHO05D006080 1.2e-61 241.9 645 38.0
vmacro10479 Vaccinium macrocarpon HOM05D005042 ORTHO05D006080 3.4e-61 240.4 738 33.3
Rhsim09G0122700 Rhododendron simsii HOM05D005042 ORTHO05D006080 2.4e-59 234.2 767 30.9
Cfa008851 Carpinus fangiana HOM05D005042 ORTHO05D006080 2.7e-58 230.7 743 33.6
Prupe.1G292900 Prunus persica HOM05D005042 ORTHO05D006080 1.9e-56 224.6 684 35.7
Haze_11871 Corylus avellana HOM05D005042 ORTHO05D006080 3.3e-56 223.8 737 34.9
ECA246G3902 Erigeron canadensis HOM05D005042 ORTHO05D006080 7.3e-56 222.6 540 37.4
Solyc05g011950.3 Solanum lycopersicum HOM05D005042 ORTHO05D006080 7.3e-56 222.6 168 73.2
Manes.01G025000 Manihot esculenta HOM05D005042 ORTHO05D006080 9.5e-56 222.2 669 32.4
EL10Ac6g14684 Beta vulgaris HOM05D005042 ORTHO05D006080 2.8e-55 220.7 586 35.0
Hund25158 Selenicereus undatus HOM05D005042 ORTHO05D006080 2.8e-55 220.7 596 33.9
CiPaw.06G094600 Carya illinoinensis HOM05D005042 ORTHO05D006080 4.7e-55 219.9 678 33.3
CiPaw.05G122400 Carya illinoinensis HOM05D005042 ORTHO05D006080 8.1e-55 219.2 722 32.4
HanXRQChr17g0570091 Helianthus annuus HOM05D005042 ORTHO05D006080 8.1e-55 219.2 537 36.7
Duzib251G0840 Durio zibethinus HOM05D005042 ORTHO05D006080 2.4e-54 217.6 647 37.4
Nn4g23527 Nelumbo nucifera HOM05D005042 ORTHO05D006080 8.9e-54 215.7 677 35.3
Oeu055079.1 Olea europaea HOM05D005042 ORTHO05D006080 8.9e-54 215.7 555 34.4
TAR726G0003 Trochodendron aralioides HOM05D005042 ORTHO05D006080 1.5e-53 214.9 714 30.5
Dinv15584 Davidia involucrata HOM05D000485 ORTHO05D000341 3.4e-53 213.8 571 35.2
SGA_v2.0_scaffold287G47187 Striga asiatica HOM05D005042 ORTHO05D006080 4.4e-53 213.4 660 32.9
Eucgr.G02425 Eucalyptus grandis HOM05D005042 ORTHO05D006080 9.9e-53 212.2 562 36.3
Potri.010G139100 Populus trichocarpa HOM05D005042 ORTHO05D006080 1.4e-51 208.4 731 30.5
Lsat_1_v5_gn_3_106381 Lactuca sativa HOM05D005042 ORTHO05D006080 3.9e-49 200.3 537 35.9
unitig_62.g23700 Utricularia gibba HOM05D005042 ORTHO05D006080 8.7e-49 199.1 559 34.2
Potri.008G109100 Populus trichocarpa HOM05D005042 ORTHO05D006080 1.5e-48 198.4 712 32.2
Potri.T155180 Populus trichocarpa HOM05D005042 ORTHO05D006080 1.5e-48 198.4 712 32.2
TWI31G0262 Tripterygium wilfordii HOM05D005042 ORTHO05D006080 7.3e-48 196.1 679 33.9
AUR62003064 Chenopodium quinoa HOM05D005042 ORTHO05D006080 1.6e-47 194.9 507 37.1
MD16G1056300 Malus domestica HOM05D005042 ORTHO05D006080 1.6e-47 194.9 672 36.0
TWI79G1206 Tripterygium wilfordii HOM05D005042 ORTHO05D006080 2.8e-47 194.1 683 34.8
Cpa.g.sc1.165 Carica papaya HOM05D005042 ORTHO05D006080 4.0e-46 190.3 675 30.7
GSVIVG01012257001 Vitis vinifera HOM05D005042 ORTHO05D006080 4.0e-46 190.3 628 35.5
MBI16_g07040_MAGBIO Magnolia biondii HOM05D005042 ORTHO05D006080 9.9e-45 185.7 639 33.3
Atru.chr11.1578 Acer truncatum HOM05D005042 ORTHO05D006080 6.4e-44 183.0 750 32.8
Gohir.A05G306900 Gossypium hirsutum HOM05D005042 ORTHO05D006080 1.6e-42 178.3 625 34.6
Sopen05g006680 Solanum pennellii HOM05D000061 ORTHO05D000050 2.1e-42 177.9 206 54.9
AUR62007879 Chenopodium quinoa HOM05D005042 ORTHO05D006080 3.5e-42 177.2 475 35.8
Gohir.D05G307200 Gossypium hirsutum HOM05D005042 ORTHO05D006080 1.7e-41 174.9 628 34.1
Gorai.009G327100 Gossypium raimondii HOM05D005042 ORTHO05D006080 3.9e-41 173.7 628 34.1
DCAR_030054 Daucus carota HOM05D005042 ORTHO05D006080 1.1e-40 172.2 416 39.7
MD13G1056900 Malus domestica HOM05D005042 ORTHO05D006080 3.3e-40 170.6 657 33.2
Sabra08G0082800 Salix brachista HOM05D005042 ORTHO05D006080 4.3e-40 170.2 721 32.2
PGR119G2532 Punica granatum HOM05D005042 ORTHO05D006080 7.3e-40 169.5 680 32.6
Aqoxy3G03731 Aquilegia oxysepala HOM05D005042 ORTHO05D006080 8.1e-39 166.0 800 29.4
DCAR_007205 Daucus carota HOM05D005042 ORTHO05D006080 1.8e-38 164.9 541 33.3
Lj2g0019338 Lotus japonicus HOM05D005042 ORTHO05D006080 1.8e-38 164.9 203 58.1
MELO3C011406.2 Cucumis melo HOM05D005042 ORTHO05D006080 3.1e-38 164.1 527 31.7
CsaV3_6G033840 Cucumis sativus L. HOM05D005042 ORTHO05D006080 9.0e-38 162.5 527 32.3
Lalb_Chr17g0341431 Lupinus albus HOM05D005042 ORTHO05D006080 2.0e-37 161.4 618 30.9
CAN.G1021.18 Capsicum annuum HOM05D005042 ORTHO05D006080 5.8e-37 159.8 137 65.0
TPR.G38503 Trifolium pratense HOM05D005042 ORTHO05D006080 9.9e-37 159.1 512 31.6
arahy.Tifrunner.gnm1.ann1.U4ZHW1 Arachis hypogaea HOM05D005042 ORTHO05D006080 1.3e-36 158.7 585 34.4
Sc04g0007390 Simmondsia chinensis HOM05D005042 ORTHO05D006080 1.3e-36 158.7 589 35.8
Ciclev10030834m.g Citrus clementina HOM05D005042 ORTHO05D006080 4.9e-36 156.8 726 32.0
CANSAT11G1456 Cannabis sativa HOM05D005042 ORTHO05D006080 6.4e-36 156.4 711 29.0
THA.LOC104821992 Tarenaya hassleriana HOM05D005042 ORTHO05D006080 1.9e-35 154.8 633 30.2
TAR629G0517 Trochodendron aralioides HOM05D005042 ORTHO05D006080 9.3e-35 152.5 735 31.7
CDE10G0431 Ceratophyllum demersum HOM05D005042 ORTHO05D006080 2.1e-34 151.4 581 31.0
CAN.G1021.20 Capsicum annuum HOM05D005042 ORTHO05D006080 3.5e-34 150.6 143 67.8
Phvul.003G038600 Phaseolus vulgaris HOM05D005042 ORTHO05D006080 4.6e-34 150.2 601 31.6
CAN.G1021.24 Capsicum annuum HOM05D005042 ORTHO05D006080 1.0e-33 149.1 130 77.7
TAR371G1247 Trochodendron aralioides HOM05D005042 ORTHO05D006080 3.0e-33 147.5 238 43.7
COL.COLO4_27818 Corchorus olitorius HOM05D005042 ORTHO05D006080 5.1e-33 146.7 600 28.8
Glyma.02G122200 Glycine max HOM05D005042 ORTHO05D006080 5.1e-33 146.7 570 34.2
HanXRQChr16g0527171 Helianthus annuus HOM05D005042 ORTHO05D006080 2.5e-32 144.4 222 56.8
ClCG08G010560 Citrullus lanatus HOM05D005042 ORTHO05D006080 3.3e-32 144.1 565 30.1
PGSC0003DMG400028305 Solanum tuberosum HOM05D005042 ORTHO05D006080 3.3e-32 144.1 88 85.2
Solyc05g011960.4 Solanum lycopersicum HOM05D005042 ORTHO05D006080 9.6e-32 142.5 88 84.1
TPR.G34179 Trifolium pratense HOM05D005042 ORTHO05D006080 9.6e-32 142.5 171 58.5
HPP92_000883 Vanilla planifolia HOM05D005042 ORTHO05D006080 9.6e-32 142.5 611 32.7
RcHm_v2.0_Chr4g0437421 Rosa chinensis HOM05D005042 ORTHO05D006080 1.3e-31 142.1 687 30.0
Aa31LG4G11790 Aethionema arabicum HOM05D005042 ORTHO05D006080 2.1e-31 141.4 619 27.6
TPR.G37754 Trifolium pratense HOM05D005042 ORTHO05D006080 2.1e-31 141.4 568 29.0
Lalb_Chr10g0099121 Lupinus albus HOM05D005042 ORTHO05D006080 3.7e-31 140.6 605 32.4
Sopen05g006700 Solanum pennellii HOM05D005042 ORTHO05D006080 6.2e-31 139.8 88 81.8
CAN.G1021.19 Capsicum annuum HOM05D005042 ORTHO05D006080 8.1e-31 139.4 157 56.7
ECA234G0547 Erigeron canadensis HOM05D005042 ORTHO05D006080 8.1e-31 139.4 532 32.3
Ca_05058_v3 Cicer arietinum L. HOM05D005042 ORTHO05D006080 1.4e-30 138.7 558 29.0
FAN22G1919 Fragaria x ananassa HOM05D005042 ORTHO05D006080 1.4e-30 138.7 667 31.2
COL.COLO4_27836 Corchorus olitorius HOM05D005042 ORTHO05D006080 1.8e-30 138.3 170 50.0
FAN07G1705 Fragaria x ananassa HOM05D005042 ORTHO05D006080 3.1e-30 137.5 665 31.9
PSO478G2238 Papaver somniferum HOM05D005042 ORTHO05D006080 6.9e-30 136.3 164 50.0
Psat2g093520 Pisum sativum HOM05D005042 ORTHO05D006080 6.9e-30 136.3 209 52.2
FAN17G2893 Fragaria x ananassa HOM05D005042 ORTHO05D006080 2.0e-29 134.8 668 30.1
Carub.0002s1568 Capsella rubella HOM05D005042 ORTHO05D006080 2.6e-29 134.4 584 32.0
PSO063G2731 Papaver somniferum HOM05D005042 ORTHO05D006080 5.8e-29 133.3 622 32.2
PSO782G3512 Papaver somniferum HOM05D005042 ORTHO05D006080 5.8e-29 133.3 623 32.6
Thhalv10018302m.g Eutrema salsugineum HOM05D005042 ORTHO05D006080 2.2e-28 131.3 629 31.3
FvH4_4g29350 Fragaria vesca HOM05D005042 ORTHO05D006080 3.8e-28 130.6 664 30.4
Ah.03g138660 Amaranthus hybridus HOM05D000485 ORTHO05D000341 5.5e-27 126.7 543 34.8
PSO017G3437 Papaver somniferum HOM05D005042 ORTHO05D006080 1.2e-26 125.6 606 29.2
AT1G69060 Arabidopsis thaliana HOM05D005042 ORTHO05D006080 1.0e-25 122.5 645 28.1
Sp5g24160 Schrenkiella parvula HOM05D005042 ORTHO05D006080 1.0e-25 122.5 570 31.4
CARHR061940 Cardamine hirsuta HOM05D005042 ORTHO05D006080 1.3e-25 122.1 161 62.7
Sabra10G0107300 Salix brachista HOM05D005042 ORTHO05D006080 1.3e-25 122.1 667 25.9
ATR0827G068 Amborella trichopoda HOM05D005042 ORTHO05D006080 3.0e-25 120.9 600 29.3
Lsat_1_v5_gn_4_25561 Lactuca sativa HOM05D005042 ORTHO05D006080 1.1e-24 119.0 158 47.5
VMungo1215G3453 Vigna mungo HOM05D005042 ORTHO05D006080 1.1e-24 119.0 133 51.9
Glyma.01G064400 Glycine max HOM05D005042 ORTHO05D006080 3.3e-24 117.5 604 32.5
QL05p008217 Quercus lobata HOM05D005042 ORTHO05D006080 5.6e-24 116.7 262 35.5
Zm00001eb057530 Zea mays HOM05D005042 ORTHO05D006080 4.8e-23 113.6 163 61.3
TAR371G1032 Trochodendron aralioides HOM05D005042 ORTHO05D006080 6.2e-23 113.2 248 36.3
arahy.Tifrunner.gnm1.ann1.L0BNS4 Arachis hypogaea HOM05D005042 ORTHO05D006080 1.1e-22 112.5 93 62.4
DCAR_023741 Daucus carota HOM05D005042 ORTHO05D006080 1.8e-22 111.7 85 68.2
Medtr5g047140 Medicago truncatula HOM05D005042 ORTHO05D006080 1.5e-21 108.6 619 27.9
AagrBONN_evm.TU.Sc2ySwM_117.2775 Anthoceros agrestis HOM05D005042 ORTHO05D006080 7.6e-21 106.3 442 28.5
FAN12G1549 Fragaria x ananassa HOM05D005042 ORTHO05D006080 1.3e-20 105.5 356 35.1
AL2G28110 Arabidopsis lyrata HOM05D005042 ORTHO05D006080 3.8e-20 104.0 648 28.7
Dinv15585 Davidia involucrata HOM05D005042 ORTHO05D006080 1.4e-19 102.1 72 75.0
SEGI_40784 Sequoiadendron giganteum HOM05D005042 ORTHO05D006080 4.6e-18 97.1 430 30.2
Pp3c1_680 Physcomitrium patens HOM05D005042 ORTHO05D006080 1.0e-17 95.9 500 27.0
Os03g0752700 Oryza sativa ssp. japonica HOM05D005042 ORTHO05D006080 3.0e-17 94.4 504 31.2
BraA07t31136Z Brassica rapa HOM05D005042 ORTHO05D006080 5.1e-17 93.6 166 55.4
Mapoly0211s0012 Marchantia polymorpha HOM05D005042 ORTHO05D006080 1.5e-16 92.0 158 51.3
SEGI_37091 Sequoiadendron giganteum HOM05D005042 ORTHO05D006080 4.3e-16 90.5 482 28.8
Pp3c2_29040 Physcomitrium patens HOM05D005042 ORTHO05D006080 8.2e-15 86.3 513 30.0
CDE10G0071 Ceratophyllum demersum HOM05D005042 ORTHO05D006080 1.4e-14 85.5 478 27.4
Sed0017498 Sechium edule HOM05D005042 ORTHO05D006080 4.1e-14 84.0 478 26.4
A07p35450 Brassica napus HOM05D005042 ORTHO05D006080 3.4e-13 80.9 681 28.3
C06p40780 Brassica napus HOM05D005042 ORTHO05D006080 4.5e-13 80.5 411 33.3
BolC6t39355H Brassica oleracea HOM05D005042 ORTHO05D006080 5.9e-13 80.1 412 34.5
CBR_g19648 Chara braunii HOM05D005042 ORTHO05D006080 6.5e-12 76.6 90 51.1
Nn3g17525 Nelumbo nucifera HOM05D005042 ORTHO05D006080 1.5e-08 65.5 683 24.6
arahy.Tifrunner.gnm1.ann1.6TZ00L Arachis hypogaea HOM05D005042 ORTHO05D006080 1.7e-07 62.0 451 27.1
Manes.14G088800 Manihot esculenta HOM05D005042 ORTHO05D006080 1.1e-06 59.3 440 26.6


User provided reference genes

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