Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1021.24 Capsicum annuum HOM05D005042 ORTHO05D006080 6.8e-106 388.3 372 100.0
CAN.G1021.18 Capsicum annuum HOM05D005042 ORTHO05D006080 3.5e-54 216.5 197 61.9
CAN.G1021.20 Capsicum annuum HOM05D005042 ORTHO05D006080 8.2e-51 205.3 197 66.0
Solyc05g011960.4 Solanum lycopersicum HOM05D005042 ORTHO05D006080 1.3e-37 161.4 188 62.8
Sopen05g006700 Solanum pennellii HOM05D005042 ORTHO05D006080 3.9e-37 159.8 196 60.7
Solyc05g011950.3 Solanum lycopersicum HOM05D005042 ORTHO05D006080 5.1e-37 159.5 130 66.2
CAN.G1021.19 Capsicum annuum HOM05D005042 ORTHO05D006080 6.7e-37 159.1 195 53.8
PGSC0003DMG400028305 Solanum tuberosum HOM05D005042 ORTHO05D006080 1.9e-36 157.5 187 62.0
Nitab4.5_0012072g0010 Nicotiana tabacum HOM05D005042 ORTHO05D006080 4.3e-36 156.4 130 81.5
PGSC0003DMG400028304 Solanum tuberosum HOM05D005042 ORTHO05D006080 4.8e-35 152.9 130 78.5
CAN.G1021.3 Capsicum annuum HOM05D005042 ORTHO05D006080 2.4e-34 150.6 130 77.7
CAN.G1021.10 Capsicum annuum HOM05D005042 ORTHO05D006080 3.1e-34 150.2 130 62.3
Solyc05g011930.4 Solanum lycopersicum HOM05D005042 ORTHO05D006080 5.3e-34 149.4 130 76.9
Sopen05g006670 Solanum pennellii HOM05D005042 ORTHO05D006080 5.3e-34 149.4 130 76.9
Nitab4.5_0000027g0180 Nicotiana tabacum HOM05D005042 ORTHO05D006080 3.4e-33 146.7 130 78.5
Peaxi162Scf00188g01341 Petunia axillaris HOM05D005042 ORTHO05D006080 2.5e-31 140.6 135 73.3
Lj3A1027T86 Lonicera japonica HOM05D005042 ORTHO05D006080 7.9e-30 135.6 134 60.4
Lsat_1_v5_gn_3_106381 Lactuca sativa HOM05D005042 ORTHO05D006080 1.8e-29 134.4 144 52.1
Sopen05g006680 Solanum pennellii HOM05D000061 ORTHO05D000050 3.9e-29 133.3 117 61.5
Dinv34024 Davidia involucrata HOM05D005042 ORTHO05D006080 1.1e-28 131.7 135 63.0
Actinidia07770 Actinidia chinensis HOM05D005042 ORTHO05D006080 2.0e-28 131.0 132 55.3
HanXRQChr17g0570091 Helianthus annuus HOM05D005042 ORTHO05D006080 2.0e-28 131.0 132 54.5
ECA246G3902 Erigeron canadensis HOM05D005042 ORTHO05D006080 2.2e-27 127.5 143 53.8
CSS0000751 Camellia sinensis var. sinensis HOM05D005042 ORTHO05D006080 2.8e-27 127.1 134 67.9
vmacro01299 Vaccinium macrocarpon HOM05D005042 ORTHO05D006080 2.8e-27 127.1 134 53.7
Manes.01G025000 Manihot esculenta HOM05D005042 ORTHO05D006080 4.8e-27 126.3 133 52.6
Cc11_g11610 Coffea canephora HOM05D005042 ORTHO05D006080 1.8e-26 124.4 133 51.9
Rhsim12G0071400 Rhododendron simsii HOM05D005042 ORTHO05D006080 2.4e-26 124.0 134 53.0
Haze_11871 Corylus avellana HOM05D005042 ORTHO05D006080 5.3e-26 122.9 91 69.2
Cfa008851 Carpinus fangiana HOM05D005042 ORTHO05D006080 9.1e-26 122.1 134 61.9
Lj2g0019338 Lotus japonicus HOM05D005042 ORTHO05D006080 9.1e-26 122.1 129 61.2
TAR726G0003 Trochodendron aralioides HOM05D005042 ORTHO05D006080 1.2e-25 121.7 139 48.9
CDE10G0431 Ceratophyllum demersum HOM05D005042 ORTHO05D006080 2.0e-25 120.9 133 51.1
Cpa.g.sc1.165 Carica papaya HOM05D005042 ORTHO05D006080 2.6e-25 120.6 92 66.3
Oeu055079.1 Olea europaea HOM05D005042 ORTHO05D006080 4.5e-25 119.8 133 50.4
Prupe.1G292900 Prunus persica HOM05D005042 ORTHO05D006080 4.5e-25 119.8 132 59.8
CiPaw.05G122400 Carya illinoinensis HOM05D005042 ORTHO05D006080 5.9e-25 119.4 91 67.0
CiPaw.06G094600 Carya illinoinensis HOM05D005042 ORTHO05D006080 7.7e-25 119.0 91 64.8
Lalb_Chr17g0341431 Lupinus albus HOM05D005042 ORTHO05D006080 7.7e-25 119.0 129 53.5
Lsat_1_v5_gn_4_25561 Lactuca sativa HOM05D005042 ORTHO05D006080 1.0e-24 118.6 130 50.0
Eucgr.G02425 Eucalyptus grandis HOM05D005042 ORTHO05D006080 1.7e-24 117.9 131 48.1
Atru.chr11.1578 Acer truncatum HOM05D005042 ORTHO05D006080 2.2e-24 117.5 133 64.7
MD16G1056300 Malus domestica HOM05D005042 ORTHO05D006080 2.2e-24 117.5 91 67.0
Thecc.02G323700 Theobroma cacao HOM05D005042 ORTHO05D006080 2.2e-24 117.5 132 64.4
DCAR_007205 Daucus carota HOM05D005042 ORTHO05D006080 3.8e-24 116.7 89 65.2
CANSAT11G1456 Cannabis sativa HOM05D005042 ORTHO05D006080 8.5e-24 115.5 133 48.9
Potri.008G109100 Populus trichocarpa HOM05D005042 ORTHO05D006080 8.5e-24 115.5 133 46.6
Potri.T155180 Populus trichocarpa HOM05D005042 ORTHO05D006080 8.5e-24 115.5 133 46.6
TAR371G1247 Trochodendron aralioides HOM05D005042 ORTHO05D006080 1.1e-23 115.2 133 48.1
ATR0827G068 Amborella trichopoda HOM05D005042 ORTHO05D006080 1.4e-23 114.8 130 56.2
MD13G1056900 Malus domestica HOM05D005042 ORTHO05D006080 1.4e-23 114.8 91 65.9
Oeu024162.6 Olea europaea HOM05D005042 ORTHO05D006080 1.4e-23 114.8 132 48.5
PSO478G2238 Papaver somniferum HOM05D005042 ORTHO05D006080 1.9e-23 114.4 133 48.9
Potri.010G139100 Populus trichocarpa HOM05D005042 ORTHO05D006080 1.9e-23 114.4 133 45.9
CsaV3_6G033840 Cucumis sativus L. HOM05D005042 ORTHO05D006080 5.5e-23 112.8 135 49.6
Nn4g23527 Nelumbo nucifera HOM05D005042 ORTHO05D006080 5.5e-23 112.8 91 64.8
HPP92_000883 Vanilla planifolia HOM05D005042 ORTHO05D006080 1.2e-22 111.7 130 60.8
RcHm_v2.0_Chr4g0437421 Rosa chinensis HOM05D005042 ORTHO05D006080 1.6e-22 111.3 91 60.4
Aa31LG4G11790 Aethionema arabicum HOM05D005042 ORTHO05D006080 2.1e-22 110.9 92 59.8
EL10Ac6g14684 Beta vulgaris HOM05D005042 ORTHO05D006080 2.1e-22 110.9 132 46.2
TWI31G0262 Tripterygium wilfordii HOM05D005042 ORTHO05D006080 2.1e-22 110.9 128 62.5
MELO3C011406.2 Cucumis melo HOM05D005042 ORTHO05D006080 2.7e-22 110.5 135 48.9
Duzib251G0840 Durio zibethinus HOM05D005042 ORTHO05D006080 2.7e-22 110.5 87 65.5
Lalb_Chr10g0099121 Lupinus albus HOM05D005042 ORTHO05D006080 3.6e-22 110.2 129 62.8
MBI16_g07040_MAGBIO Magnolia biondii HOM05D005042 ORTHO05D006080 3.6e-22 110.2 132 60.6
PSO017G3437 Papaver somniferum HOM05D005042 ORTHO05D006080 3.6e-22 110.2 133 46.6
Hund25158 Selenicereus undatus HOM05D005042 ORTHO05D006080 3.6e-22 110.2 131 45.8
vmacro10479 Vaccinium macrocarpon HOM05D005042 ORTHO05D006080 3.6e-22 110.2 182 39.6
Migut.E00252 Erythranthe guttata HOM05D005042 ORTHO05D006080 4.7e-22 109.8 136 47.1
Glyma.02G122200 Glycine max HOM05D005042 ORTHO05D006080 8.0e-22 109.0 131 60.3
COL.COLO4_27836 Corchorus olitorius HOM05D005042 ORTHO05D006080 1.0e-21 108.6 88 62.5
Thhalv10018302m.g Eutrema salsugineum HOM05D005042 ORTHO05D006080 1.0e-21 108.6 87 60.9
Sabra08G0082800 Salix brachista HOM05D005042 ORTHO05D006080 1.0e-21 108.6 134 59.7
TPR.G34179 Trifolium pratense HOM05D005042 ORTHO05D006080 1.0e-21 108.6 132 56.8
DCAR_023741 Daucus carota HOM05D005042 ORTHO05D006080 1.4e-21 108.2 83 66.3
CDE10G0071 Ceratophyllum demersum HOM05D005042 ORTHO05D006080 1.8e-21 107.8 91 59.3
VMungo1215G3453 Vigna mungo HOM05D005042 ORTHO05D006080 1.8e-21 107.8 91 60.4
ECA234G0547 Erigeron canadensis HOM05D005042 ORTHO05D006080 2.3e-21 107.5 149 55.0
TWI79G1206 Tripterygium wilfordii HOM05D005042 ORTHO05D006080 2.3e-21 107.5 87 64.4
Aqoxy3G03731 Aquilegia oxysepala HOM05D005042 ORTHO05D006080 3.9e-21 106.7 132 53.0
arahy.Tifrunner.gnm1.ann1.L0BNS4 Arachis hypogaea HOM05D005042 ORTHO05D006080 6.7e-21 105.9 86 62.8
DCAR_030054 Daucus carota HOM05D005042 ORTHO05D006080 6.7e-21 105.9 131 59.5
Glyma.01G064400 Glycine max HOM05D005042 ORTHO05D006080 6.7e-21 105.9 90 60.0
Psat2g093520 Pisum sativum HOM05D005042 ORTHO05D006080 6.7e-21 105.9 132 62.1
GSVIVG01012257001 Vitis vinifera HOM05D005042 ORTHO05D006080 1.1e-20 105.1 75 69.3
SGA_v2.0_scaffold287G47187 Striga asiatica HOM05D005042 ORTHO05D006080 1.5e-20 104.8 133 48.1
unitig_62.g23700 Utricularia gibba HOM05D005042 ORTHO05D006080 1.5e-20 104.8 131 46.6
Phvul.003G038600 Phaseolus vulgaris HOM05D005042 ORTHO05D006080 2.0e-20 104.4 129 47.3
FAN12G1549 Fragaria x ananassa HOM05D005042 ORTHO05D006080 3.3e-20 103.6 93 58.1
FAN17G2893 Fragaria x ananassa HOM05D005042 ORTHO05D006080 3.3e-20 103.6 93 58.1
Oeu057419.1 Olea europaea HOM05D005042 ORTHO05D006080 4.4e-20 103.2 132 58.3
QL05p008217 Quercus lobata HOM05D005042 ORTHO05D006080 5.7e-20 102.8 90 60.0
FAN22G1919 Fragaria x ananassa HOM05D005042 ORTHO05D006080 7.4e-20 102.4 93 57.0
PSO063G2731 Papaver somniferum HOM05D005042 ORTHO05D006080 7.4e-20 102.4 94 58.5
Ciclev10030834m.g Citrus clementina HOM05D005042 ORTHO05D006080 9.7e-20 102.1 84 60.7
FvH4_4g29350 Fragaria vesca HOM05D005042 ORTHO05D006080 9.7e-20 102.1 93 57.0
PGR119G2532 Punica granatum HOM05D005042 ORTHO05D006080 9.7e-20 102.1 81 63.0
TPR.G37754 Trifolium pratense HOM05D005042 ORTHO05D006080 9.7e-20 102.1 133 45.1
AUR62003064 Chenopodium quinoa HOM05D005042 ORTHO05D006080 1.3e-19 101.7 131 45.0
THA.LOC104821992 Tarenaya hassleriana HOM05D005042 ORTHO05D006080 1.7e-19 101.3 92 59.8
Ah.03g138660 Amaranthus hybridus HOM05D000485 ORTHO05D000341 2.2e-19 100.9 87 58.6
arahy.Tifrunner.gnm1.ann1.U4ZHW1 Arachis hypogaea HOM05D005042 ORTHO05D006080 2.8e-19 100.5 145 53.1
Gohir.A05G306900 Gossypium hirsutum HOM05D005042 ORTHO05D006080 2.8e-19 100.5 79 64.6
Gohir.D05G307200 Gossypium hirsutum HOM05D005042 ORTHO05D006080 2.8e-19 100.5 76 65.8
Gorai.009G327100 Gossypium raimondii HOM05D005042 ORTHO05D006080 2.8e-19 100.5 76 65.8
CARHR061940 Cardamine hirsuta HOM05D005042 ORTHO05D006080 3.7e-19 100.1 81 60.5
AUR62007879 Chenopodium quinoa HOM05D005042 ORTHO05D006080 3.7e-19 100.1 150 42.0
Oeu021807.1 Olea europaea HOM05D005042 ORTHO05D006080 3.7e-19 100.1 133 54.1
HanXRQChr16g0527171 Helianthus annuus HOM05D005042 ORTHO05D006080 4.8e-19 99.8 143 59.4
PSO782G3512 Papaver somniferum HOM05D005042 ORTHO05D006080 6.3e-19 99.4 94 57.4
TAR629G0517 Trochodendron aralioides HOM05D005042 ORTHO05D006080 6.3e-19 99.4 80 63.8
AT1G69060 Arabidopsis thaliana HOM05D005042 ORTHO05D006080 1.4e-18 98.2 91 56.0
Medtr5g047140 Medicago truncatula HOM05D005042 ORTHO05D006080 1.4e-18 98.2 86 57.0
Sp5g24160 Schrenkiella parvula HOM05D005042 ORTHO05D006080 2.4e-18 97.4 81 58.0
Dinv15585 Davidia involucrata HOM05D005042 ORTHO05D006080 3.1e-18 97.1 70 68.6
C06p40780 Brassica napus HOM05D005042 ORTHO05D006080 4.1e-18 96.7 87 56.3
BolC6t39355H Brassica oleracea HOM05D005042 ORTHO05D006080 4.1e-18 96.7 87 56.3
ClCG08G010560 Citrullus lanatus HOM05D005042 ORTHO05D006080 5.3e-18 96.3 169 37.3
FAN07G1705 Fragaria x ananassa HOM05D005042 ORTHO05D006080 5.3e-18 96.3 93 55.9
Rhsim09G0122700 Rhododendron simsii HOM05D005042 ORTHO05D006080 5.3e-18 96.3 214 35.0
SEGI_40784 Sequoiadendron giganteum HOM05D005042 ORTHO05D006080 7.0e-18 95.9 133 41.4
AL2G28110 Arabidopsis lyrata HOM05D005042 ORTHO05D006080 2.0e-17 94.4 79 59.5
A07p35450 Brassica napus HOM05D005042 ORTHO05D006080 2.9e-16 90.5 81 56.8
BraA07t31136Z Brassica rapa HOM05D005042 ORTHO05D006080 2.9e-16 90.5 81 56.8
Ca_05058_v3 Cicer arietinum L. HOM05D005042 ORTHO05D006080 3.8e-16 90.1 89 51.7
Sc04g0007390 Simmondsia chinensis HOM05D005042 ORTHO05D006080 1.9e-15 87.8 71 57.7
Pp3c2_29040 Physcomitrium patens HOM05D005042 ORTHO05D006080 2.5e-15 87.4 133 50.4
Zm00001eb057530 Zea mays HOM05D005042 ORTHO05D006080 3.2e-15 87.0 128 57.8
Pp3c1_680 Physcomitrium patens HOM05D005042 ORTHO05D006080 4.2e-15 86.7 133 41.4
Carub.0002s1568 Capsella rubella HOM05D005042 ORTHO05D006080 1.6e-14 84.7 65 63.1
AagrBONN_evm.TU.Sc2ySwM_117.2775 Anthoceros agrestis HOM05D005042 ORTHO05D006080 2.7e-14 84.0 138 39.1
Os03g0752700 Oryza sativa ssp. japonica HOM05D005042 ORTHO05D006080 2.7e-14 84.0 88 52.3
SEGI_37091 Sequoiadendron giganteum HOM05D005042 ORTHO05D006080 1.5e-12 78.2 134 43.3
TPR.G38503 Trifolium pratense HOM05D005042 ORTHO05D006080 2.6e-12 77.4 104 41.3
Mapoly0211s0012 Marchantia polymorpha HOM05D005042 ORTHO05D006080 1.3e-11 75.1 82 47.6
CBR_g19648 Chara braunii HOM05D005042 ORTHO05D006080 1.8e-10 71.2 86 47.7
COL.COLO4_27818 Corchorus olitorius HOM05D005042 ORTHO05D006080 9.1e-10 68.9 87 40.2
Nn3g17525 Nelumbo nucifera HOM05D005042 ORTHO05D006080 8.5e-08 62.4 113 37.2
Sed0017498 Sechium edule HOM05D005042 ORTHO05D006080 4.2e-07 60.1 52 59.6
PSO541G1879 Papaver somniferum HOM05D005042 ORTHO05D006080 9.4e-07 58.9 84 40.5
Sabra10G0107300 Salix brachista HOM05D005042 ORTHO05D006080 4.7e-06 56.6 82 37.8


User provided reference genes

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