Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1021.19 Capsicum annuum HOM05D005042 ORTHO05D006080 1.5e-120 437.6 563 100.0
CAN.G1021.18 Capsicum annuum HOM05D005042 ORTHO05D006080 1.3e-60 238.4 184 74.5
CAN.G1021.20 Capsicum annuum HOM05D005042 ORTHO05D006080 5.7e-48 196.4 184 63.6
Solyc05g011960.4 Solanum lycopersicum HOM05D005042 ORTHO05D006080 3.8e-44 183.7 179 68.2
Sopen05g006700 Solanum pennellii HOM05D005042 ORTHO05D006080 1.1e-43 182.2 192 64.6
PGSC0003DMG400028305 Solanum tuberosum HOM05D005042 ORTHO05D006080 2.6e-40 171.0 175 64.0
Solyc05g011950.3 Solanum lycopersicum HOM05D005042 ORTHO05D006080 7.0e-38 162.9 143 64.3
CAN.G1021.24 Capsicum annuum HOM05D005042 ORTHO05D006080 1.2e-34 152.1 195 53.8
CAN.G1021.10 Capsicum annuum HOM05D005042 ORTHO05D006080 2.6e-32 144.4 140 59.3
PGSC0003DMG400028304 Solanum tuberosum HOM05D005042 ORTHO05D006080 6.4e-31 139.8 157 55.4
CAN.G1021.3 Capsicum annuum HOM05D005042 ORTHO05D006080 1.9e-30 138.3 157 56.7
Nitab4.5_0012072g0010 Nicotiana tabacum HOM05D005042 ORTHO05D006080 5.4e-30 136.7 157 55.4
Oeu055079.1 Olea europaea HOM05D005042 ORTHO05D006080 9.2e-30 136.0 144 54.2
Solyc05g011930.4 Solanum lycopersicum HOM05D005042 ORTHO05D006080 9.2e-30 136.0 157 54.8
Sopen05g006670 Solanum pennellii HOM05D005042 ORTHO05D006080 9.2e-30 136.0 157 54.8
Manes.01G025000 Manihot esculenta HOM05D005042 ORTHO05D006080 2.0e-29 134.8 142 56.3
Actinidia07770 Actinidia chinensis HOM05D005042 ORTHO05D006080 2.7e-29 134.4 143 56.6
Nitab4.5_0000027g0180 Nicotiana tabacum HOM05D005042 ORTHO05D006080 4.6e-29 133.7 160 53.8
Lj3A1027T86 Lonicera japonica HOM05D005042 ORTHO05D006080 1.0e-28 132.5 144 56.2
Cc11_g11610 Coffea canephora HOM05D005042 ORTHO05D006080 1.7e-28 131.7 153 54.2
CiPaw.05G122400 Carya illinoinensis HOM05D005042 ORTHO05D006080 3.9e-28 130.6 142 52.8
vmacro01299 Vaccinium macrocarpon HOM05D005042 ORTHO05D006080 3.9e-28 130.6 142 57.7
HanXRQChr17g0570091 Helianthus annuus HOM05D005042 ORTHO05D006080 5.0e-28 130.2 141 56.0
Eucgr.G02425 Eucalyptus grandis HOM05D005042 ORTHO05D006080 1.9e-27 128.3 139 53.2
Aa31LG4G11790 Aethionema arabicum HOM05D005042 ORTHO05D006080 5.6e-27 126.7 107 61.7
Sopen05g006680 Solanum pennellii HOM05D000061 ORTHO05D000050 1.6e-26 125.2 126 57.9
CiPaw.06G094600 Carya illinoinensis HOM05D005042 ORTHO05D006080 2.1e-26 124.8 151 50.3
Lsat_1_v5_gn_3_106381 Lactuca sativa HOM05D005042 ORTHO05D006080 3.6e-26 124.0 137 54.7
Oeu024162.6 Olea europaea HOM05D005042 ORTHO05D006080 3.6e-26 124.0 141 52.5
Potri.008G109100 Populus trichocarpa HOM05D005042 ORTHO05D006080 3.6e-26 124.0 142 52.1
Potri.T155180 Populus trichocarpa HOM05D005042 ORTHO05D006080 3.6e-26 124.0 142 52.1
CANSAT11G1456 Cannabis sativa HOM05D005042 ORTHO05D006080 4.7e-26 123.6 142 50.7
ECA246G3902 Erigeron canadensis HOM05D005042 ORTHO05D006080 4.7e-26 123.6 136 56.6
Rhsim12G0071400 Rhododendron simsii HOM05D005042 ORTHO05D006080 1.1e-25 122.5 142 54.9
EL10Ac6g14684 Beta vulgaris HOM05D005042 ORTHO05D006080 2.3e-25 121.3 140 50.7
TAR371G1247 Trochodendron aralioides HOM05D005042 ORTHO05D006080 4.0e-25 120.6 143 50.3
Migut.E00252 Erythranthe guttata HOM05D005042 ORTHO05D006080 5.2e-25 120.2 149 50.3
AUR62003064 Chenopodium quinoa HOM05D005042 ORTHO05D006080 6.8e-25 119.8 139 51.1
Cfa008851 Carpinus fangiana HOM05D005042 ORTHO05D006080 1.2e-24 119.0 99 64.6
CDE10G0431 Ceratophyllum demersum HOM05D005042 ORTHO05D006080 1.2e-24 119.0 142 50.7
COL.COLO4_27836 Corchorus olitorius HOM05D005042 ORTHO05D006080 1.2e-24 119.0 147 49.0
Peaxi162Scf00188g01341 Petunia axillaris HOM05D005042 ORTHO05D006080 1.2e-24 119.0 148 57.4
Potri.010G139100 Populus trichocarpa HOM05D005042 ORTHO05D006080 1.2e-24 119.0 142 50.0
Hund25158 Selenicereus undatus HOM05D005042 ORTHO05D006080 2.0e-24 118.2 139 49.6
TAR726G0003 Trochodendron aralioides HOM05D005042 ORTHO05D006080 2.0e-24 118.2 139 51.1
Aqoxy3G03731 Aquilegia oxysepala HOM05D005042 ORTHO05D006080 2.6e-24 117.9 141 58.9
Prupe.1G292900 Prunus persica HOM05D005042 ORTHO05D006080 2.6e-24 117.9 99 63.6
AUR62007879 Chenopodium quinoa HOM05D005042 ORTHO05D006080 4.4e-24 117.1 139 49.6
CsaV3_6G033840 Cucumis sativus L. HOM05D005042 ORTHO05D006080 4.4e-24 117.1 142 51.4
MD16G1056300 Malus domestica HOM05D005042 ORTHO05D006080 4.4e-24 117.1 96 66.7
Lalb_Chr17g0341431 Lupinus albus HOM05D005042 ORTHO05D006080 5.8e-24 116.7 134 53.7
THA.LOC104821992 Tarenaya hassleriana HOM05D005042 ORTHO05D006080 5.8e-24 116.7 108 63.0
vmacro10479 Vaccinium macrocarpon HOM05D005042 ORTHO05D006080 5.8e-24 116.7 189 42.3
CSS0000751 Camellia sinensis var. sinensis HOM05D005042 ORTHO05D006080 7.5e-24 116.3 93 67.7
Haze_11871 Corylus avellana HOM05D005042 ORTHO05D006080 1.7e-23 115.2 96 64.6
MELO3C011406.2 Cucumis melo HOM05D005042 ORTHO05D006080 2.2e-23 114.8 142 50.7
Cpa.g.sc1.165 Carica papaya HOM05D005042 ORTHO05D006080 2.9e-23 114.4 113 59.3
arahy.Tifrunner.gnm1.ann1.L0BNS4 Arachis hypogaea HOM05D005042 ORTHO05D006080 3.7e-23 114.0 109 57.8
MD13G1056900 Malus domestica HOM05D005042 ORTHO05D006080 3.7e-23 114.0 96 64.6
VMungo1215G3453 Vigna mungo HOM05D005042 ORTHO05D006080 8.3e-23 112.8 109 56.9
AT1G69060 Arabidopsis thaliana HOM05D005042 ORTHO05D006080 1.4e-22 112.1 103 60.2
PSO478G2238 Papaver somniferum HOM05D005042 ORTHO05D006080 2.4e-22 111.3 142 47.9
ATR0827G068 Amborella trichopoda HOM05D005042 ORTHO05D006080 7.1e-22 109.8 153 48.4
Lsat_1_v5_gn_4_25561 Lactuca sativa HOM05D005042 ORTHO05D006080 7.1e-22 109.8 130 49.2
Oeu057419.1 Olea europaea HOM05D005042 ORTHO05D006080 9.2e-22 109.4 97 60.8
SGA_v2.0_scaffold287G47187 Striga asiatica HOM05D005042 ORTHO05D006080 9.2e-22 109.4 147 49.7
PSO017G3437 Papaver somniferum HOM05D005042 ORTHO05D006080 1.6e-21 108.6 142 46.5
Atru.chr11.1578 Acer truncatum HOM05D005042 ORTHO05D006080 2.1e-21 108.2 89 65.2
Nn4g23527 Nelumbo nucifera HOM05D005042 ORTHO05D006080 2.1e-21 108.2 95 62.1
Phvul.003G038600 Phaseolus vulgaris HOM05D005042 ORTHO05D006080 4.6e-21 107.1 104 56.7
DCAR_023741 Daucus carota HOM05D005042 ORTHO05D006080 6.0e-21 106.7 99 59.6
Dinv34024 Davidia involucrata HOM05D005042 ORTHO05D006080 6.0e-21 106.7 141 49.6
DCAR_007205 Daucus carota HOM05D005042 ORTHO05D006080 7.8e-21 106.3 97 60.8
Thecc.02G323700 Theobroma cacao HOM05D005042 ORTHO05D006080 7.8e-21 106.3 89 61.8
MBI16_g07040_MAGBIO Magnolia biondii HOM05D005042 ORTHO05D006080 1.3e-20 105.5 97 59.8
TWI31G0262 Tripterygium wilfordii HOM05D005042 ORTHO05D006080 1.3e-20 105.5 90 63.3
Duzib251G0840 Durio zibethinus HOM05D005042 ORTHO05D006080 1.7e-20 105.1 89 62.9
Lj2g0019338 Lotus japonicus HOM05D005042 ORTHO05D006080 3.9e-20 104.0 150 43.3
Medtr5g047140 Medicago truncatula HOM05D005042 ORTHO05D006080 3.9e-20 104.0 109 51.4
ECA234G0547 Erigeron canadensis HOM05D005042 ORTHO05D006080 8.6e-20 102.8 94 58.5
RcHm_v2.0_Chr4g0437421 Rosa chinensis HOM05D005042 ORTHO05D006080 8.6e-20 102.8 92 58.7
unitig_62.g23700 Utricularia gibba HOM05D005042 ORTHO05D006080 8.6e-20 102.8 149 45.6
Sabra08G0082800 Salix brachista HOM05D005042 ORTHO05D006080 1.1e-19 102.4 95 57.9
HPP92_000883 Vanilla planifolia HOM05D005042 ORTHO05D006080 1.5e-19 102.1 92 60.9
Lalb_Chr10g0099121 Lupinus albus HOM05D005042 ORTHO05D006080 1.9e-19 101.7 92 63.0
QL05p008217 Quercus lobata HOM05D005042 ORTHO05D006080 1.9e-19 101.7 110 53.6
Oeu021807.1 Olea europaea HOM05D005042 ORTHO05D006080 2.5e-19 101.3 151 51.0
Ciclev10030834m.g Citrus clementina HOM05D005042 ORTHO05D006080 4.3e-19 100.5 86 61.6
DCAR_030054 Daucus carota HOM05D005042 ORTHO05D006080 4.3e-19 100.5 94 59.6
PSO063G2731 Papaver somniferum HOM05D005042 ORTHO05D006080 4.3e-19 100.5 94 58.5
Ah.03g138660 Amaranthus hybridus HOM05D000485 ORTHO05D000341 5.6e-19 100.1 87 59.8
FAN22G1919 Fragaria x ananassa HOM05D005042 ORTHO05D006080 5.6e-19 100.1 97 57.7
Rhsim09G0122700 Rhododendron simsii HOM05D005042 ORTHO05D006080 5.6e-19 100.1 225 36.4
CDE10G0071 Ceratophyllum demersum HOM05D005042 ORTHO05D006080 7.3e-19 99.8 93 57.0
TWI79G1206 Tripterygium wilfordii HOM05D005042 ORTHO05D006080 7.3e-19 99.8 89 61.8
Thhalv10018302m.g Eutrema salsugineum HOM05D005042 ORTHO05D006080 1.6e-18 98.6 86 60.5
ClCG08G010560 Citrullus lanatus HOM05D005042 ORTHO05D006080 2.1e-18 98.2 177 39.0
PSO782G3512 Papaver somniferum HOM05D005042 ORTHO05D006080 3.6e-18 97.4 94 57.4
Glyma.02G122200 Glycine max HOM05D005042 ORTHO05D006080 8.1e-18 96.3 92 56.5
Gohir.A05G306900 Gossypium hirsutum HOM05D005042 ORTHO05D006080 1.4e-17 95.5 81 61.7
Gohir.D05G307200 Gossypium hirsutum HOM05D005042 ORTHO05D006080 1.4e-17 95.5 78 62.8
Gorai.009G327100 Gossypium raimondii HOM05D005042 ORTHO05D006080 1.4e-17 95.5 78 62.8
FAN17G2893 Fragaria x ananassa HOM05D005042 ORTHO05D006080 3.1e-17 94.4 97 56.7
Glyma.01G064400 Glycine max HOM05D005042 ORTHO05D006080 3.1e-17 94.4 93 55.9
FAN12G1549 Fragaria x ananassa HOM05D005042 ORTHO05D006080 4.0e-17 94.0 96 55.2
CARHR061940 Cardamine hirsuta HOM05D005042 ORTHO05D006080 5.2e-17 93.6 81 60.5
Psat2g093520 Pisum sativum HOM05D005042 ORTHO05D006080 5.2e-17 93.6 91 53.8
SEGI_40784 Sequoiadendron giganteum HOM05D005042 ORTHO05D006080 8.9e-17 92.8 145 41.4
FvH4_4g29350 Fragaria vesca HOM05D005042 ORTHO05D006080 1.2e-16 92.4 96 54.2
FAN07G1705 Fragaria x ananassa HOM05D005042 ORTHO05D006080 3.4e-16 90.9 97 55.7
AL2G28110 Arabidopsis lyrata HOM05D005042 ORTHO05D006080 5.8e-16 90.1 79 59.5
PGR119G2532 Punica granatum HOM05D005042 ORTHO05D006080 5.8e-16 90.1 81 58.0
Sp5g24160 Schrenkiella parvula HOM05D005042 ORTHO05D006080 7.6e-16 89.7 81 56.8
arahy.Tifrunner.gnm1.ann1.U4ZHW1 Arachis hypogaea HOM05D005042 ORTHO05D006080 9.9e-16 89.4 99 48.5
C06p40780 Brassica napus HOM05D005042 ORTHO05D006080 1.3e-15 89.0 86 55.8
BolC6t39355H Brassica oleracea HOM05D005042 ORTHO05D006080 1.3e-15 89.0 86 55.8
Zm00001eb057530 Zea mays HOM05D005042 ORTHO05D006080 1.3e-15 89.0 140 49.3
AagrBONN_evm.TU.Sc2ySwM_117.2775 Anthoceros agrestis HOM05D005042 ORTHO05D006080 1.7e-15 88.6 111 45.9
HanXRQChr16g0527171 Helianthus annuus HOM05D005042 ORTHO05D006080 1.7e-15 88.6 89 59.6
Dinv15585 Davidia involucrata HOM05D005042 ORTHO05D006080 2.2e-15 88.2 71 66.2
TPR.G34179 Trifolium pratense HOM05D005042 ORTHO05D006080 2.2e-15 88.2 144 39.6
Pp3c1_680 Physcomitrium patens HOM05D005042 ORTHO05D006080 2.9e-15 87.8 145 41.4
TPR.G37754 Trifolium pratense HOM05D005042 ORTHO05D006080 8.4e-15 86.3 143 39.9
GSVIVG01012257001 Vitis vinifera HOM05D005042 ORTHO05D006080 8.4e-15 86.3 75 61.3
TAR629G0517 Trochodendron aralioides HOM05D005042 ORTHO05D006080 1.4e-14 85.5 79 59.5
SEGI_37091 Sequoiadendron giganteum HOM05D005042 ORTHO05D006080 2.4e-14 84.7 100 47.0
Ca_05058_v3 Cicer arietinum L. HOM05D005042 ORTHO05D006080 4.1e-14 84.0 108 46.3
Sc04g0007390 Simmondsia chinensis HOM05D005042 ORTHO05D006080 7.1e-14 83.2 71 57.7
A07p35450 Brassica napus HOM05D005042 ORTHO05D006080 9.2e-14 82.8 81 55.6
BraA07t31136Z Brassica rapa HOM05D005042 ORTHO05D006080 9.2e-14 82.8 81 55.6
Os03g0752700 Oryza sativa ssp. japonica HOM05D005042 ORTHO05D006080 1.2e-13 82.4 87 51.7
Carub.0002s1568 Capsella rubella HOM05D005042 ORTHO05D006080 1.0e-12 79.3 65 61.5
Pp3c2_29040 Physcomitrium patens HOM05D005042 ORTHO05D006080 5.1e-12 77.0 103 42.7
Mapoly0211s0012 Marchantia polymorpha HOM05D005042 ORTHO05D006080 2.1e-10 71.6 91 44.0
TPR.G38503 Trifolium pratense HOM05D005042 ORTHO05D006080 8.1e-10 69.7 113 38.1
COL.COLO4_27818 Corchorus olitorius HOM05D005042 ORTHO05D006080 6.8e-09 66.6 92 42.4
CBR_g19648 Chara braunii HOM05D005042 ORTHO05D006080 8.9e-09 66.2 101 41.6
Sopen05g006690 Solanum pennellii HOM05D005042 ORTHO05D006080 8.9e-09 66.2 103 43.7
Sabra10G0107300 Salix brachista HOM05D005042 ORTHO05D006080 2.9e-07 61.2 90 45.6
Nn3g17525 Nelumbo nucifera HOM05D005042 ORTHO05D006080 1.1e-06 59.3 113 39.8


User provided reference genes

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