Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1014.4 Capsicum annuum HOM05D001952 ORTHO05D004913 2.9e-277 958.0 506 100.0
PGSC0003DMG400016476 Solanum tuberosum HOM05D001952 ORTHO05D004913 1.5e-241 839.3 502 86.3
Sopen02g025360 Solanum pennellii HOM05D001952 ORTHO05D004913 1.4e-239 832.8 502 84.9
Solyc02g080650.3 Solanum lycopersicum HOM05D001952 ORTHO05D004913 2.4e-239 832.0 502 84.9
PGSC0003DMG402027917 Solanum tuberosum HOM05D001952 ORTHO05D004913 1.7e-237 825.9 502 87.1
Peaxi162Scf00231g00244 Petunia axillaris HOM05D001952 ORTHO05D004913 3.6e-227 791.6 505 80.2
Peaxi162Scf00207g01356 Petunia axillaris HOM05D001952 ORTHO05D004913 1.6e-219 766.1 554 72.4
Nitab4.5_0003477g0020 Nicotiana tabacum HOM05D001952 ORTHO05D004913 2.9e-216 755.4 503 78.1
Nitab4.5_0000603g0070 Nicotiana tabacum HOM05D001952 ORTHO05D004913 2.7e-214 748.8 503 76.9
Oeu024552.2 Olea europaea HOM05D001952 ORTHO05D004913 8.0e-158 561.2 479 59.9
CSS0039830 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D004913 1.0e-157 560.8 480 60.2
CSS0007104 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D004913 1.3e-155 553.9 480 59.8
Lj6A55T16 Lonicera japonica HOM05D001952 ORTHO05D004913 1.3e-155 553.9 483 60.0
Cc02_g37060 Coffea canephora HOM05D001952 ORTHO05D004913 3.7e-155 552.4 478 60.9
TAR375G0220 Trochodendron aralioides HOM05D001952 ORTHO05D004913 3.7e-155 552.4 479 59.1
Hma1.2p1_0132F.1_g060740 Hydrangea macrophylla HOM05D001952 ORTHO05D004913 1.1e-154 550.8 479 59.9
Rhsim05G0144200 Rhododendron simsii HOM05D001952 ORTHO05D004913 1.2e-153 547.4 480 60.2
QL08p050945 Quercus lobata HOM05D001952 ORTHO05D004913 1.5e-148 530.4 480 56.9
Ciclev10004825m.g Citrus clementina HOM05D001952 ORTHO05D004913 4.4e-148 528.9 480 56.7
CANSAT56G1737 Cannabis sativa HOM05D001952 ORTHO05D004913 1.3e-147 527.3 484 57.4
Haze_00291 Corylus avellana HOM05D001952 ORTHO05D004913 1.7e-147 526.9 471 58.2
Atru.chr1.534 Acer truncatum HOM05D001952 ORTHO05D004913 3.7e-147 525.8 483 56.9
Haze_16907 Corylus avellana HOM05D001952 ORTHO05D004913 8.3e-147 524.6 471 57.7
MD15G1435200 Malus domestica HOM05D001952 ORTHO05D004913 1.1e-146 524.2 481 54.5
Manes.05G041100 Manihot esculenta HOM05D001952 ORTHO05D004913 1.8e-146 523.5 475 57.3
RcHm_v2.0_Chr1g0351801 Rosa chinensis HOM05D001952 ORTHO05D004913 3.1e-146 522.7 479 56.2
COL.COLO4_19760 Corchorus olitorius HOM05D001952 ORTHO05D004913 1.7e-144 516.9 477 55.3
DCAR_006897 Daucus carota HOM05D001952 ORTHO05D004913 8.5e-144 514.6 479 55.9
Potri.014G074900 Populus trichocarpa HOM05D001952 ORTHO05D004913 1.9e-143 513.5 478 56.3
Thecc.07G183300 Theobroma cacao HOM05D001952 ORTHO05D004913 3.2e-143 512.7 480 54.0
FAN06G4730 Fragaria x ananassa HOM05D001952 ORTHO05D004913 9.4e-143 511.1 503 53.7
Lsat_1_v5_gn_7_6921 Lactuca sativa HOM05D001952 ORTHO05D004913 9.4e-143 511.1 473 55.8
FvH4_7g08540 Fragaria vesca HOM05D001952 ORTHO05D004913 1.0e-141 507.7 503 53.5
Duzib213G0290 Durio zibethinus HOM05D001952 ORTHO05D004913 2.3e-141 506.5 480 54.6
Sabra14G0053600 Salix brachista HOM05D001952 ORTHO05D004913 4.0e-141 505.8 478 55.6
Gorai.002G109800 Gossypium raimondii HOM05D001952 ORTHO05D004913 5.2e-141 505.4 480 53.3
FAN03G2676 Fragaria x ananassa HOM05D001952 ORTHO05D004913 6.8e-141 505.0 503 53.1
FAN10G1564 Fragaria x ananassa HOM05D001952 ORTHO05D004913 2.0e-140 503.4 479 54.7
FAN10G0713 Fragaria x ananassa HOM05D001952 ORTHO05D004913 2.6e-140 503.1 479 54.5
Glyma.18G215400 Glycine max HOM05D001952 ORTHO05D004913 3.4e-140 502.7 483 54.9
Gohir.D01G084100 Gossypium hirsutum HOM05D001952 ORTHO05D004913 6.3e-139 498.4 480 52.7
AUR62033377 Chenopodium quinoa HOM05D001952 ORTHO05D004913 8.3e-139 498.0 481 52.8
FAN06G0866 Fragaria x ananassa HOM05D001952 ORTHO05D004913 2.4e-138 496.5 503 52.9
TWI34G0947 Tripterygium wilfordii HOM05D001952 ORTHO05D004913 9.2e-138 494.6 481 55.1
FAN06G0845 Fragaria x ananassa HOM05D001952 ORTHO05D004913 1.2e-137 494.2 503 52.9
FvH4_7g12770 Fragaria vesca HOM05D001952 ORTHO05D004913 1.6e-137 493.8 503 52.9
Hund16968 Selenicereus undatus HOM05D001952 ORTHO05D004913 2.7e-137 493.0 480 54.4
SGA_v2.0_scaffold7G04047 Striga asiatica HOM05D001952 ORTHO05D004913 5.9e-137 491.9 476 53.8
Gohir.A01G099700 Gossypium hirsutum HOM05D001952 ORTHO05D004913 1.0e-136 491.1 480 51.7
HanXRQChr04g0122171 Helianthus annuus HOM05D001952 ORTHO05D004913 1.3e-136 490.7 478 53.1
PGR004G1086 Punica granatum HOM05D001952 ORTHO05D004913 1.3e-136 490.7 481 52.8
SalBow7G2566 Salvia bowleyana HOM05D001952 ORTHO05D004913 2.3e-136 490.0 477 54.9
Lalb_Chr19g0127181 Lupinus albus HOM05D001952 ORTHO05D004913 2.9e-136 489.6 479 52.4
ECA236G1094 Erigeron canadensis HOM05D001952 ORTHO05D004913 6.6e-136 488.4 478 53.8
Psat3g112920 Pisum sativum HOM05D001952 ORTHO05D004913 6.6e-136 488.4 477 52.4
Phvul.005G010100 Phaseolus vulgaris HOM05D001952 ORTHO05D005568 1.5e-135 487.3 480 53.8
arahy.Tifrunner.gnm1.ann1.7790ZZ Arachis hypogaea HOM05D001952 ORTHO05D004913 1.9e-135 486.9 481 53.0
arahy.Tifrunner.gnm1.ann1.U9VUHP Arachis hypogaea HOM05D001952 ORTHO05D004913 2.5e-135 486.5 480 53.3
arahy.Tifrunner.gnm1.ann1.Z6RYGL Arachis hypogaea HOM05D001952 ORTHO05D004913 2.5e-135 486.5 480 53.3
AUR62004280 Chenopodium quinoa HOM05D001952 ORTHO05D004913 2.5e-135 486.5 481 52.2
Gohir.D01G083600 Gossypium hirsutum HOM05D001952 ORTHO05D004913 5.6e-135 485.3 480 51.9
Sc02g0002270 Simmondsia chinensis HOM05D001952 ORTHO05D004913 7.3e-135 485.0 481 53.2
VMungo1383G2849 Vigna mungo HOM05D001952 ORTHO05D004913 1.2e-134 484.2 483 53.2
Dinv32411 Davidia involucrata HOM05D001952 ORTHO05D004913 3.6e-134 482.6 370 66.2
AL6G53250 Arabidopsis lyrata HOM05D001952 ORTHO05D004913 1.4e-133 480.7 471 53.1
Migut.D01755 Erythranthe guttata HOM05D001952 ORTHO05D004913 1.4e-133 480.7 479 53.0
Cpa.g.sc753.2 Carica papaya HOM05D001952 ORTHO05D004913 3.0e-133 479.6 480 53.1
ClCG09G012850 Citrullus lanatus HOM05D001952 ORTHO05D004913 8.9e-133 478.0 479 51.6
Migut.L00878 Erythranthe guttata HOM05D001952 ORTHO05D004913 8.9e-133 478.0 479 52.6
RcHm_v2.0_Chr1g0313121 Rosa chinensis HOM05D001952 ORTHO05D004913 1.2e-132 477.6 503 52.1
Ah.05g175860 Amaranthus hybridus HOM05D001952 ORTHO05D004913 3.4e-132 476.1 482 52.3
EL10Ac1g00960 Beta vulgaris HOM05D001952 ORTHO05D004913 9.8e-132 474.6 488 50.6
Medtr7g075940 Medicago truncatula HOM05D001952 ORTHO05D004913 9.8e-132 474.6 476 51.7
MELO3C003326.2 Cucumis melo HOM05D001952 ORTHO05D004913 4.9e-131 472.2 480 50.4
Migut.L00973 Erythranthe guttata HOM05D001952 ORTHO05D004913 1.4e-130 470.7 479 52.0
Lj5g0018602 Lotus japonicus HOM05D001952 ORTHO05D004913 2.4e-130 469.9 475 51.6
Eucgr.H05060 Eucalyptus grandis HOM05D001952 ORTHO05D004913 9.2e-130 468.0 474 50.8
Sed0000408 Sechium edule HOM05D001952 ORTHO05D004913 3.5e-129 466.1 480 49.6
Aqoxy2G02797 Aquilegia oxysepala HOM05D001952 ORTHO05D004913 5.9e-129 465.3 504 48.8
Psat4g209120 Pisum sativum HOM05D001952 ORTHO05D004913 1.3e-128 464.2 479 51.1
Aqoxy5G00703 Aquilegia oxysepala HOM05D001952 ORTHO05D004913 3.0e-128 463.0 503 48.7
AT4G00231 Arabidopsis thaliana HOM05D001952 ORTHO05D004913 1.5e-127 460.7 471 51.6
CARHR248310 Cardamine hirsuta HOM05D001952 ORTHO05D004913 4.3e-127 459.1 472 49.8
PSO478G1189 Papaver somniferum HOM05D001952 ORTHO05D004913 9.5e-127 458.0 478 52.1
Thhalv10025092m.g Eutrema salsugineum HOM05D001952 ORTHO05D004913 2.1e-126 456.8 471 51.6
THA.LOC104801468 Tarenaya hassleriana HOM05D001952 ORTHO05D004913 3.6e-126 456.1 472 52.1
Carub.0005s0957 Capsella rubella HOM05D001952 ORTHO05D004913 2.3e-125 453.4 471 50.5
Phvul.005G009900 Phaseolus vulgaris HOM05D001952 ORTHO05D004913 5.2e-125 452.2 480 50.8
PSO782G1679 Papaver somniferum HOM05D001952 ORTHO05D004913 6.8e-125 451.8 478 51.5
BcaB01g02233 Brassica carinata HOM05D001952 ORTHO05D004913 1.5e-124 450.7 487 51.1
C09p00240 Brassica napus HOM05D001952 ORTHO05D004913 5.8e-124 448.7 481 50.1
BraA09t35698Z Brassica rapa HOM05D001952 ORTHO05D004913 2.2e-123 446.8 481 49.7
BcaC04g24187 Brassica carinata HOM05D001952 ORTHO05D004913 2.9e-123 446.4 480 50.4
CiPaw.02G175900 Carya illinoinensis HOM05D001952 ORTHO05D004913 6.4e-123 445.3 407 56.5
A09p00620 Brassica napus HOM05D001952 ORTHO05D004913 1.4e-122 444.1 481 49.9
BolC9t52959H Brassica oleracea HOM05D001952 ORTHO05D004913 1.4e-122 444.1 484 50.4
Aa31LG4G9800 Aethionema arabicum HOM05D001952 ORTHO05D004913 4.6e-121 439.1 471 48.6
unitig_0.g170 Utricularia gibba HOM05D001952 ORTHO05D004913 1.1e-119 434.5 481 48.6
TAR624G0159 Trochodendron aralioides HOM05D001952 ORTHO05D004913 3.3e-119 433.0 367 58.9
vmacro19640 Vaccinium macrocarpon HOM05D001952 ORTHO05D004913 2.8e-118 429.9 476 51.1
Prupe.2G152200 Prunus persica HOM05D001952 ORTHO05D004913 4.7e-118 429.1 371 57.4
Aa31LG11G5430 Aethionema arabicum HOM05D001952 ORTHO05D004913 5.2e-117 425.6 471 48.8
MBI05_g28393_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 6.4e-115 418.7 488 48.6
MBI17_g11655_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 2.1e-110 403.7 480 48.1
CsaV3_3G049900 Cucumis sativus L. HOM05D001952 ORTHO05D004913 2.8e-110 403.3 383 52.5
Sp6g00320 Schrenkiella parvula HOM05D001952 ORTHO05D004913 8.1e-110 401.7 472 47.7
Lj4g0006210 Lotus japonicus HOM05D001952 ORTHO05D004913 3.1e-109 399.8 465 49.0
Gohir.A01G099100 Gossypium hirsutum HOM05D001952 ORTHO05D004913 1.9e-103 380.6 480 44.4
Os03g0118900 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D004913 6.6e-96 355.5 467 44.5
ATR0820G267 Amborella trichopoda HOM05D001952 ORTHO05D004913 2.5e-95 353.6 526 38.6
Hund09554 Selenicereus undatus HOM05D001952 ORTHO05D004913 9.6e-95 351.7 407 49.4
Carub.0006s2681 Capsella rubella HOM05D001952 ORTHO05D004913 1.6e-94 350.9 418 45.9
vmacro08923 Vaccinium macrocarpon HOM05D001952 ORTHO05D004913 3.6e-94 349.7 374 50.0
MD07G1124700 Malus domestica HOM05D001952 ORTHO05D004913 3.8e-91 339.7 326 53.7
PSO781G0092 Papaver somniferum HOM05D001952 ORTHO05D004913 2.3e-88 330.5 476 44.3
Zm00001eb001350 Zea mays HOM05D001952 ORTHO05D004913 6.6e-88 328.9 470 43.2
TPR.G13243 Trifolium pratense HOM05D001952 ORTHO05D004913 3.6e-86 323.2 286 57.7
Aa31LG10G10140 Aethionema arabicum HOM05D001952 ORTHO05D004913 2.0e-84 317.4 395 43.8
TPR.G6584 Trifolium pratense HOM05D001952 ORTHO05D004913 2.6e-84 317.0 289 56.7
TPR.G18232 Trifolium pratense HOM05D001952 ORTHO05D004913 2.9e-83 313.5 286 56.6
Ca_07850_v3 Cicer arietinum L. HOM05D001952 ORTHO05D004913 3.8e-83 313.2 269 59.1
CDE01G0692 Ceratophyllum demersum HOM05D001952 ORTHO05D004913 4.9e-83 312.8 484 36.8
Peaxi162Scf00153g01322 Petunia axillaris HOM05D001952 ORTHO05D004913 7.4e-79 298.9 255 67.5
FAN01G0405 Fragaria x ananassa HOM05D001952 ORTHO05D004913 1.3e-78 298.1 503 37.8
GSVIVG01026499001 Vitis vinifera HOM05D001952 ORTHO05D008796 1.1e-74 285.0 359 47.9
Gorai.002G109400 Gossypium raimondii HOM05D001952 ORTHO05D004913 4.6e-73 279.6 414 38.6
SEGI_14537 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 1.5e-68 264.6 424 38.2
MD02G1196600 Malus domestica HOM05D001952 ORTHO05D004913 1.2e-65 255.0 291 46.0
Eucgr.I00845 Eucalyptus grandis HOM05D001952 ORTHO05D004913 1.6e-65 254.6 351 39.9
Cfa001612 Carpinus fangiana HOM05D001952 ORTHO05D004913 3.6e-65 253.4 182 69.2
Lj6A55T17 Lonicera japonica HOM05D001952 ORTHO05D004913 2.3e-64 250.8 244 57.0
TPR.G34261 Trifolium pratense HOM05D001952 ORTHO05D004913 3.4e-60 236.9 162 68.5
Lj1g0014823 Lotus japonicus HOM05D001952 ORTHO05D004913 7.7e-60 235.7 256 51.6
Eucgr.I00835 Eucalyptus grandis HOM05D001952 ORTHO05D004913 3.8e-59 233.4 376 37.8
AagrBONN_evm.TU.Sc2ySwM_117.782 Anthoceros agrestis HOM05D001952 ORTHO05D004913 5.0e-59 233.0 473 32.1
PSO782G4203 Papaver somniferum HOM05D001952 ORTHO05D004913 9.4e-58 228.8 184 60.9
PSO541G2051 Papaver somniferum HOM05D001952 ORTHO05D004913 6.1e-57 226.1 303 45.5
Pp3c21_1420 Physcomitrium patens HOM05D001952 ORTHO05D004913 2.3e-56 224.2 540 31.5
PSO781G0068 Papaver somniferum HOM05D001952 ORTHO05D004913 5.1e-56 223.0 489 33.3
SMO351G0039 Selaginella moellendorffii HOM05D001952 ORTHO05D004913 9.7e-55 218.8 474 33.1
SEGI_36330 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 3.7e-54 216.9 378 36.0
PSO541G1892 Papaver somniferum HOM05D001952 ORTHO05D004913 1.8e-53 214.5 487 32.4
Mapoly0062s0112 Marchantia polymorpha HOM05D001952 ORTHO05D004913 7.7e-52 209.1 597 28.8
Migut.D01751 Erythranthe guttata HOM05D001952 ORTHO05D004913 2.9e-51 207.2 216 50.0
Glyma.09G276502 Glycine max HOM05D001952 ORTHO05D004913 1.6e-49 201.4 230 47.0
Potri.008G158901 Populus trichocarpa HOM05D001952 ORTHO05D004913 3.6e-49 200.3 172 59.3
SEGI_08371 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 2.3e-48 197.6 471 31.0
PSO781G0254 Papaver somniferum HOM05D001952 ORTHO05D004913 1.0e-43 182.2 424 30.9
Nitab4.5_0001040g0030 Nicotiana tabacum HOM05D001952 ORTHO05D004913 6.5e-43 179.5 118 75.4
TPR.G37851 Trifolium pratense HOM05D001952 ORTHO05D004913 3.2e-42 177.2 344 36.3
CBR_g31682 Chara braunii HOM05D001952 ORTHO05D004913 9.4e-42 175.6 642 25.9
TPR.G34267 Trifolium pratense HOM05D001952 ORTHO05D004913 3.6e-41 173.7 186 48.9
MBI17_g11657_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 2.6e-39 167.5 285 37.2
Sopen04g024480 Solanum pennellii HOM05D001952 ORTHO05D004913 2.4e-37 161.0 90 84.4
HPP92_001565 Vanilla planifolia HOM05D001952 ORTHO05D004913 7.0e-37 159.5 266 38.7
TPR.G23686 Trifolium pratense HOM05D001952 ORTHO05D012360 2.9e-35 154.1 459 29.4
Oeu061480.1 Olea europaea HOM05D001952 ORTHO05D004913 1.0e-32 145.6 466 29.2
Ca_07851_v3 Cicer arietinum L. HOM05D001952 ORTHO05D004913 7.5e-31 139.4 122 50.8
arahy.Tifrunner.gnm1.ann1.LMZ4B6 Arachis hypogaea HOM05D001952 ORTHO05D004913 3.7e-30 137.1 126 56.3
FAN03G2381 Fragaria x ananassa HOM05D001952 ORTHO05D004913 1.0e-27 129.0 97 60.8
PSO782G4156 Papaver somniferum HOM05D001952 ORTHO05D004913 1.0e-24 119.0 134 49.3
PSO326G0001 Papaver somniferum HOM05D001952 ORTHO05D004913 3.0e-24 117.5 133 48.9
MD07G1124800 Malus domestica HOM05D001952 ORTHO05D004913 6.3e-22 109.8 132 45.5
Sabra14G0053500 Salix brachista HOM05D001952 ORTHO05D004913 1.8e-21 108.2 305 29.8
Cre08.g374300 Chlamydomonas reinhardtii HOM05D001952 ORTHO05D004913 2.0e-20 104.8 103 48.5
TPR.G6606 Trifolium pratense HOM05D001952 ORTHO05D004913 2.3e-19 101.3 142 40.8
Duzib268G0813 Durio zibethinus HOM05D001952 ORTHO05D004913 1.8e-16 91.7 119 41.2
arahy.Tifrunner.gnm1.ann1.6B0T5V Arachis hypogaea HOM05D001952 ORTHO05D004913 6.4e-14 83.2 146 37.7
MCO07G121 Micromonas commoda HOM05D001952 ORTHO05D004913 4.1e-13 80.5 170 28.2
FAN03G1970 Fragaria x ananassa HOM05D001952 ORTHO05D004913 5.6e-10 70.1 72 48.6
Cfa025427 Carpinus fangiana HOM05D000553 ORTHO05D125085 9.8e-07 59.3 62 37.1


User provided reference genes

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