Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1013.22 Capsicum annuum HOM05D011626 ORTHO05D012023 1.2e-135 486.5 242 100.0
CAN.G1013.16 Capsicum annuum HOM05D011626 ORTHO05D012023 3.5e-111 405.2 303 72.3
Nitab4.5_0009309g0010 Nicotiana tabacum HOM05D011626 ORTHO05D012023 2.1e-60 236.5 267 54.7
PGSC0003DMG400013677 Solanum tuberosum HOM05D011626 ORTHO05D012023 9.3e-56 221.1 289 49.1
PGSC0003DMG400023529 Solanum tuberosum HOM05D011626 ORTHO05D012023 9.0e-51 204.5 230 55.2
Nitab4.5_0006489g0070 Nicotiana tabacum HOM05D011626 ORTHO05D012023 1.2e-50 204.1 265 50.9
Peaxi162Scf00015g00122 Petunia axillaris HOM05D011626 ORTHO05D012023 6.9e-43 178.3 294 42.5
Nitab4.5_0006095g0020 Nicotiana tabacum HOM05D011626 ORTHO05D012023 2.7e-39 166.4 234 47.0
Nitab4.5_0001233g0080 Nicotiana tabacum HOM05D011626 ORTHO05D012023 5.3e-35 152.1 302 38.7
Nitab4.5_0001904g0070 Nicotiana tabacum HOM05D011626 ORTHO05D012023 1.7e-33 147.1 304 36.5
PGSC0003DMG400008438 Solanum tuberosum HOM05D011626 ORTHO05D012023 2.2e-28 130.2 201 42.8
Cc02_g07920 Coffea canephora HOM05D011626 ORTHO05D012023 9.1e-27 124.8 257 38.9
Sopen05g032740 Solanum pennellii HOM05D011626 ORTHO05D012023 1.3e-25 120.9 327 33.0
Solyc05g054250.1 Solanum lycopersicum HOM05D011626 ORTHO05D012023 1.7e-25 120.6 195 43.1
CAN.G449.34 Capsicum annuum HOM05D000520 ORTHO05D012023 1.2e-21 107.8 313 30.7
DCAR_011690 Daucus carota HOM05D000520 ORTHO05D012023 1.2e-15 87.8 265 27.9
CAN.G1013.14 Capsicum annuum HOM05D000262 ORTHO05D012023 1.8e-14 84.0 288 29.5
CAN.G1013.15 Capsicum annuum HOM05D000262 ORTHO05D012023 5.2e-14 82.4 297 28.6
Dinv03052 Davidia involucrata HOM05D000790 ORTHO05D000769 4.4e-13 79.3 147 38.1
Migut.D00281 Erythranthe guttata HOM05D000520 ORTHO05D012023 5.4e-11 72.4 124 33.1
Atru.chr5.1392 Acer truncatum HOM05D002055 ORTHO05D002120 1.0e-09 68.2 137 35.8
COL.COLO4_09124 Corchorus olitorius HOM05D000520 ORTHO05D023685 3.3e-08 63.2 157 31.2
TWI23G0379 Tripterygium wilfordii HOM05D000520 ORTHO05D000399 5.6e-08 62.4 262 24.8
Hma1.2p1_1037F.1_g250580 Hydrangea macrophylla HOM05D000520 ORTHO05D000399 9.5e-08 61.6 90 37.8
SGA_v2.0_scaffold39G15363 Striga asiatica HOM05D000520 ORTHO05D000399 9.5e-08 61.6 94 39.4
Cc03_g03140 Coffea canephora HOM05D000520 ORTHO05D000399 1.6e-07 60.8 93 36.6
Oeu060380.1 Olea europaea HOM05D000520 ORTHO05D000399 2.8e-07 60.1 79 40.5
MSTRG.24755 Avicennia marina HOM05D000520 ORTHO05D000399 3.6e-07 59.7 147 32.7
Sed0003129 Sechium edule HOM05D000520 ORTHO05D000399 3.6e-07 59.7 72 44.4
Actinidia40190 Actinidia chinensis HOM05D000520 ORTHO05D000399 4.7e-07 59.3 90 36.7
Rhsim07G0180900 Rhododendron simsii HOM05D000520 ORTHO05D000399 4.7e-07 59.3 74 39.2
Sc09g0003280 Simmondsia chinensis HOM05D000520 ORTHO05D000399 4.7e-07 59.3 83 37.3
Glyma.19G236700 Glycine max HOM05D000520 ORTHO05D000399 6.1e-07 58.9 122 30.3
AUR62038214 Chenopodium quinoa HOM05D000520 ORTHO05D000399 1.0e-06 58.2 85 37.6
Os11g0147500 Oryza sativa ssp. japonica HOM05D000520 ORTHO05D000399 1.0e-06 58.2 77 44.2
Os12g0144600 Oryza sativa ssp. japonica HOM05D000520 ORTHO05D000399 1.0e-06 58.2 77 44.2
unitig_748.g8561 Utricularia gibba HOM05D000520 ORTHO05D000399 1.0e-06 58.2 88 34.1
Nn4g26198 Nelumbo nucifera HOM05D000520 ORTHO05D000399 1.4e-06 57.8 152 31.6
DCAR_002413 Daucus carota HOM05D000520 ORTHO05D000399 1.8e-06 57.4 92 33.7
TWI73G0943 Tripterygium wilfordii HOM05D000520 ORTHO05D000399 1.8e-06 57.4 73 41.1
MSTRG.21832 Avicennia marina HOM05D000520 ORTHO05D000399 2.3e-06 57.0 74 41.9
ClCG03G016850 Citrullus lanatus HOM05D000520 ORTHO05D000399 2.3e-06 57.0 72 40.3
Sed0025184 Sechium edule HOM05D000520 ORTHO05D000399 2.3e-06 57.0 72 41.7
GSVIVG01000021001 Vitis vinifera HOM05D000520 ORTHO05D000399 2.3e-06 57.0 90 38.9
PGR031G0428 Punica granatum HOM05D000520 ORTHO05D000399 3.0e-06 56.6 164 26.8
MSTRG.20431 Avicennia marina HOM05D000520 ORTHO05D000399 4.0e-06 56.2 92 33.7
Dinv23967 Davidia involucrata HOM05D001853 ORTHO05D000399 4.0e-06 56.2 82 37.8
CARHR080640 Cardamine hirsuta HOM05D000520 ORTHO05D000399 5.2e-06 55.8 79 36.7
Dinv40265 Davidia involucrata HOM05D000520 ORTHO05D000399 5.2e-06 55.8 90 35.6
Actinidia00088 Actinidia chinensis HOM05D000520 ORTHO05D000399 6.8e-06 55.5 60 45.0
arahy.Tifrunner.gnm1.ann1.4A91W2 Arachis hypogaea HOM05D000520 ORTHO05D000399 6.8e-06 55.5 64 45.3
arahy.Tifrunner.gnm1.ann1.BTHT4S Arachis hypogaea HOM05D000520 ORTHO05D000399 6.8e-06 55.5 64 45.3
BcaC05g26212 Brassica carinata HOM05D000520 ORTHO05D006660 6.8e-06 55.5 85 35.3
C05p22210 Brassica napus HOM05D000520 ORTHO05D006660 6.8e-06 55.5 85 35.3
BolC5t30922H Brassica oleracea HOM05D000520 ORTHO05D006660 6.8e-06 55.5 85 35.3
Cfa006554 Carpinus fangiana HOM05D000520 ORTHO05D000399 6.8e-06 55.5 72 40.3
Eucgr.H03576 Eucalyptus grandis HOM05D000520 ORTHO05D000399 6.8e-06 55.5 112 32.1
Lsat_1_v5_gn_7_68501 Lactuca sativa HOM05D000520 ORTHO05D000399 6.8e-06 55.5 75 41.3
Lj3C779T2 Lonicera japonica HOM05D000520 ORTHO05D000399 6.8e-06 55.5 90 35.6
Medtr1g082650 Medicago truncatula HOM05D000520 ORTHO05D000399 6.8e-06 55.5 73 41.1
QL03p004617 Quercus lobata HOM05D000520 ORTHO05D000399 6.8e-06 55.5 91 35.2
QL03p004799 Quercus lobata HOM05D002900 ORTHO05D003238 6.8e-06 55.5 91 35.2
Rhsim13G0023100 Rhododendron simsii HOM05D011626 ORTHO05D012023 6.8e-06 55.5 146 30.8
Sp3g05080 Schrenkiella parvula HOM05D000520 ORTHO05D000399 6.8e-06 55.5 79 36.7
Zm00001eb238540 Zea mays HOM05D000520 ORTHO05D000399 6.8e-06 55.5 73 43.8
CiPaw.06G012700 Carya illinoinensis HOM05D000520 ORTHO05D006660 8.9e-06 55.1 102 36.3
Hma1.2p1_0511F.1_g169070 Hydrangea macrophylla HOM05D000520 ORTHO05D000399 8.9e-06 55.1 71 42.3
Lalb_Chr21g0310771 Lupinus albus HOM05D000520 ORTHO05D000399 8.9e-06 55.1 95 36.8
Manes.15G023400 Manihot esculenta HOM05D000520 ORTHO05D000399 8.9e-06 55.1 74 41.9
PGR004G1850 Punica granatum HOM05D000520 ORTHO05D000399 8.9e-06 55.1 60 45.0
SalBow5G3417 Salvia bowleyana HOM05D000520 ORTHO05D000399 8.9e-06 55.1 74 41.9
SalBow5G3772 Salvia bowleyana HOM05D000520 ORTHO05D000399 8.9e-06 55.1 74 41.9
SalBow8G2105 Salvia bowleyana HOM05D000520 ORTHO05D000399 8.9e-06 55.1 78 39.7
THA.LOC104802746 Tarenaya hassleriana HOM05D000520 ORTHO05D000399 8.9e-06 55.1 98 37.8
GSVIVG01017890001 Vitis vinifera HOM05D000520 ORTHO05D000399 8.9e-06 55.1 77 40.3
Zm00001eb406350 Zea mays HOM05D000520 ORTHO05D000399 8.9e-06 55.1 62 46.8


User provided reference genes

Program Settings