Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1011.3 Capsicum annuum HOM05D003449 ORTHO05D004133 1.5e-244 849.0 409 100.0
Sopen12g008760 Solanum pennellii HOM05D003449 ORTHO05D004133 1.9e-202 709.1 387 88.4
Nitab4.5_0000160g0010 Nicotiana tabacum HOM05D003449 ORTHO05D004133 8.6e-179 630.6 390 80.5
Peaxi162Scf00057g02231 Petunia axillaris HOM05D003449 ORTHO05D004133 2.4e-152 542.7 387 71.1
Nitab4.5_0007046g0010 Nicotiana tabacum HOM05D003449 ORTHO05D004133 1.2e-151 540.4 387 72.4
Peaxi162Scf00459g00129 Petunia axillaris HOM05D003449 ORTHO05D004133 2.6e-151 539.3 378 69.0
Nitab4.5_0001110g0060 Nicotiana tabacum HOM05D003449 ORTHO05D004133 2.5e-149 532.7 410 66.8
PGSC0003DMG400029361 Solanum tuberosum HOM05D003449 ORTHO05D004133 5.5e-149 531.6 380 69.5
CSS0049757 Camellia sinensis var. sinensis HOM05D003449 ORTHO05D004133 4.5e-143 511.9 382 64.1
CAN.G566.43 Capsicum annuum HOM05D003449 ORTHO05D004133 1.3e-142 510.4 380 67.9
Dinv24747 Davidia involucrata HOM05D003449 ORTHO05D004133 2.9e-142 509.2 384 64.6
CSS0013125 Camellia sinensis var. sinensis HOM05D003449 ORTHO05D004133 6.5e-142 508.1 382 63.9
CSS0008419 Camellia sinensis var. sinensis HOM05D003449 ORTHO05D004133 2.5e-141 506.1 387 62.8
QL10p065753 Quercus lobata HOM05D003449 ORTHO05D004133 7.9e-140 501.1 383 62.7
Solyc12g017920.3 Solanum lycopersicum HOM05D003449 ORTHO05D004133 1.0e-139 500.7 277 87.4
QL10p064632 Quercus lobata HOM05D003449 ORTHO05D004133 1.9e-138 496.5 383 62.1
GSVIVG01038259001 Vitis vinifera HOM05D003449 ORTHO05D004133 2.4e-136 489.6 383 60.8
Actinidia18391 Actinidia chinensis HOM05D003449 ORTHO05D004133 3.1e-136 489.2 381 62.5
Haze_11115 Corylus avellana HOM05D003449 ORTHO05D004133 7.2e-133 478.0 377 61.0
Cc03_g16150 Coffea canephora HOM05D003449 ORTHO05D004133 6.1e-132 474.9 376 61.7
Nitab4.5_0003108g0040 Nicotiana tabacum HOM05D003449 ORTHO05D004133 3.9e-131 472.2 349 69.1
Cfa008526 Carpinus fangiana HOM05D003449 ORTHO05D004133 3.3e-130 469.2 377 59.9
Prupe.7G270600 Prunus persica HOM05D003449 ORTHO05D004133 6.3e-129 464.9 373 61.1
Aqoxy4G00018 Aquilegia oxysepala HOM05D003449 ORTHO05D004133 1.1e-128 464.2 376 60.6
Sc25g0002200 Simmondsia chinensis HOM05D003449 ORTHO05D004133 1.1e-128 464.2 377 60.2
HanXRQChr11g0343511 Helianthus annuus HOM05D003449 ORTHO05D004133 2.0e-127 459.9 381 58.5
Atru.chr8.1212 Acer truncatum HOM05D003449 ORTHO05D004133 2.2e-126 456.4 377 58.4
Atru.chr8.1215 Acer truncatum HOM05D003449 ORTHO05D004133 6.5e-126 454.9 383 57.7
Glyma.11G010700 Glycine max HOM05D003449 ORTHO05D004133 1.4e-125 453.8 378 58.2
Nn1g09408 Nelumbo nucifera HOM05D003449 ORTHO05D004133 5.5e-125 451.8 383 58.5
arahy.Tifrunner.gnm1.ann1.D2PEHJ Arachis hypogaea HOM05D003449 ORTHO05D004133 2.1e-124 449.9 375 57.6
Ah.07g203300 Amaranthus hybridus HOM05D003449 ORTHO05D004133 2.7e-124 449.5 377 58.4
Potri.007G145800 Populus trichocarpa HOM05D003449 ORTHO05D004133 4.7e-124 448.7 381 57.7
Lsat_1_v5_gn_1_77061 Lactuca sativa HOM05D003449 ORTHO05D004133 6.1e-124 448.4 381 57.7
Lj6C291G1 Lonicera japonica HOM05D003449 ORTHO05D004133 7.9e-124 448.0 365 60.3
CANSAT54G1991 Cannabis sativa HOM05D003449 ORTHO05D004133 1.8e-123 446.8 381 58.0
arahy.Tifrunner.gnm1.ann1.4WT42H Arachis hypogaea HOM05D003449 ORTHO05D004133 3.9e-123 445.7 375 56.8
VMungo1215G1665 Vigna mungo HOM05D003449 ORTHO05D004133 1.1e-122 444.1 375 58.1
arahy.Tifrunner.gnm1.ann1.MLK5V4 Arachis hypogaea HOM05D003449 ORTHO05D004133 2.0e-122 443.4 375 56.8
Rhsim02G0176000 Rhododendron simsii HOM05D003449 ORTHO05D004133 4.4e-122 442.2 472 49.4
EL10Ac3g06174 Beta vulgaris HOM05D003449 ORTHO05D004133 9.7e-122 441.0 373 57.9
Ciclev10019560m.g Citrus clementina HOM05D003449 ORTHO05D004133 9.7e-122 441.0 380 57.1
Gohir.D01G221700 Gossypium hirsutum HOM05D003449 ORTHO05D004133 1.3e-121 440.7 377 58.4
Gorai.002G268300 Gossypium raimondii HOM05D003449 ORTHO05D004133 1.3e-121 440.7 377 58.4
Ca_14797_v3 Cicer arietinum L. HOM05D003449 ORTHO05D004133 2.8e-121 439.5 379 57.8
Sabra07G0115300 Salix brachista HOM05D003449 ORTHO05D004133 4.8e-121 438.7 384 57.3
Gohir.A01G231600 Gossypium hirsutum HOM05D003449 ORTHO05D004133 6.3e-121 438.3 377 58.1
Lalb_Chr09g0320201 Lupinus albus HOM05D003449 ORTHO05D004133 6.3e-121 438.3 375 58.1
Migut.G00914 Erythranthe guttata HOM05D003449 ORTHO05D004133 1.8e-120 436.8 376 59.3
MD15G1142600 Malus domestica HOM05D003449 ORTHO05D004133 3.1e-120 436.0 386 56.7
TWI63G1020 Tripterygium wilfordii HOM05D003449 ORTHO05D004133 3.1e-120 436.0 395 55.7
CiPaw.01G202400 Carya illinoinensis HOM05D003449 ORTHO05D004133 5.3e-120 435.3 378 56.3
PSO675G3012 Papaver somniferum HOM05D003449 ORTHO05D004133 7.0e-120 434.9 375 57.1
Potri.017G002000 Populus trichocarpa HOM05D003449 ORTHO05D004133 9.1e-120 434.5 391 56.3
Eucgr.A00416 Eucalyptus grandis HOM05D003449 ORTHO05D004133 1.2e-119 434.1 381 57.2
Oeu050305.2 Olea europaea HOM05D003449 ORTHO05D004133 1.5e-119 433.7 418 53.1
RcHm_v2.0_Chr2g0084431 Rosa chinensis HOM05D003449 ORTHO05D004133 5.9e-119 431.8 382 55.2
TPR.G12250 Trifolium pratense HOM05D003449 ORTHO05D004133 2.2e-118 429.9 383 57.4
PGR042G0752 Punica granatum HOM05D003449 ORTHO05D004133 2.9e-118 429.5 386 54.9
Ca_14410_v3 Cicer arietinum L. HOM05D003449 ORTHO05D004133 1.1e-117 427.6 372 58.3
Sopen12g032430 Solanum pennellii HOM05D003449 ORTHO05D004133 1.1e-117 427.6 310 67.7
SHI01241 Sapria himalayana HOM05D003449 ORTHO05D004133 2.5e-117 426.4 374 56.1
Phvul.007G277700 Phaseolus vulgaris HOM05D003449 ORTHO05D004133 5.5e-117 425.2 379 56.5
BcaC02g07961 Brassica carinata HOM05D003449 ORTHO05D004133 7.2e-117 424.9 376 55.9
Lj6g0003881 Lotus japonicus HOM05D003449 ORTHO05D004133 7.2e-117 424.9 372 56.5
ECA248G0698 Erigeron canadensis HOM05D003449 ORTHO05D004133 1.2e-116 424.1 348 60.1
Medtr3g029520 Medicago truncatula HOM05D003449 ORTHO05D004133 1.6e-116 423.7 376 56.4
EL10Ac3g06177 Beta vulgaris HOM05D003449 ORTHO05D004133 3.6e-116 422.5 396 55.1
BraA04t17976Z Brassica rapa HOM05D003449 ORTHO05D004133 6.1e-116 421.8 380 54.7
BcaB06g28571 Brassica carinata HOM05D003449 ORTHO05D004133 8.0e-116 421.4 376 55.1
FAN28G2575 Fragaria x ananassa HOM05D003449 ORTHO05D004133 8.0e-116 421.4 384 55.5
LjContig00222g0025650 Lotus japonicus HOM05D003449 ORTHO05D004133 8.0e-116 421.4 372 56.2
SGA_v2.0_scaffold319G48551 Striga asiatica HOM05D003449 ORTHO05D004133 8.0e-116 421.4 372 57.3
ATR0743G113 Amborella trichopoda HOM05D003449 ORTHO05D004133 1.4e-115 420.6 401 51.4
THA.LOC104800938 Tarenaya hassleriana HOM05D003449 ORTHO05D004133 1.4e-115 420.6 376 54.8
C04p61440 Brassica napus HOM05D003449 ORTHO05D004133 3.9e-115 419.1 377 55.4
BolC4t27628H Brassica oleracea HOM05D003449 ORTHO05D004133 3.9e-115 419.1 377 55.4
Phvul.007G074100 Phaseolus vulgaris HOM05D003449 ORTHO05D004133 5.2e-115 418.7 382 55.5
FvH4_6g52520 Fragaria vesca HOM05D003449 ORTHO05D004133 3.3e-114 416.0 372 55.6
Sed0014321 Sechium edule HOM05D003449 ORTHO05D004133 3.3e-114 416.0 373 56.3
A04p24550 Brassica napus HOM05D003449 ORTHO05D004133 4.4e-114 415.6 377 55.2
MBI07_g42065_MAGBIO Magnolia biondii HOM05D003449 ORTHO05D004133 4.4e-114 415.6 432 50.2
Oeu022914.1 Olea europaea HOM05D003449 ORTHO05D004133 9.7e-114 414.5 347 58.8
PGR031G2246 Punica granatum HOM05D003449 ORTHO05D004133 9.7e-114 414.5 372 54.8
AL4G27160 Arabidopsis lyrata HOM05D003449 ORTHO05D004133 2.2e-113 413.3 374 55.3
Phvul.002G039900 Phaseolus vulgaris HOM05D003449 ORTHO05D004133 2.2e-113 413.3 372 54.6
Phvul.002G040000 Phaseolus vulgaris HOM05D003449 ORTHO05D004133 1.4e-112 410.6 372 54.6
FAN14G1536 Fragaria x ananassa HOM05D003449 ORTHO05D004133 4.1e-112 409.1 375 55.7
Sp4g14220 Schrenkiella parvula HOM05D003449 ORTHO05D004133 4.1e-112 409.1 374 55.3
FAN05G5719 Fragaria x ananassa HOM05D003449 ORTHO05D004133 7.0e-112 408.3 375 55.2
CsaV3_2G011270 Cucumis sativus L. HOM05D003449 ORTHO05D004133 9.1e-112 407.9 371 56.1
Aa31LG5G5180 Aethionema arabicum HOM05D003449 ORTHO05D004133 1.3e-110 404.1 385 54.3
AT2G31870 Arabidopsis thaliana HOM05D003449 ORTHO05D004133 3.8e-110 402.5 375 53.9
CDE02G4666 Ceratophyllum demersum HOM05D003449 ORTHO05D004133 4.7e-108 395.6 390 52.1
SEGI_19112 Sequoiadendron giganteum HOM05D003449 ORTHO05D004133 4.7e-108 395.6 368 53.0
SalBow3G3320 Salvia bowleyana HOM05D003449 ORTHO05D004133 1.0e-107 394.4 333 57.7
SGA_v2.0_scaffold215G42309 Striga asiatica HOM05D003449 ORTHO05D004133 1.8e-107 393.7 354 56.2
Zm00001eb064190 Zea mays HOM05D003449 ORTHO05D004133 5.2e-107 392.1 371 52.6
Sabra17G0006000 Salix brachista HOM05D003449 ORTHO05D004133 1.5e-106 390.6 377 53.8
SGA_v2.0_scaffold12G06234 Striga asiatica HOM05D003449 ORTHO05D004133 4.4e-106 389.0 370 53.8
THA.LOC104800936 Tarenaya hassleriana HOM05D003449 ORTHO05D004133 3.7e-105 386.0 378 51.9
HPP92_007025 Vanilla planifolia HOM05D003449 ORTHO05D004133 2.7e-103 379.8 381 51.4
HPP92_007075 Vanilla planifolia HOM05D003449 ORTHO05D004133 3.5e-103 379.4 381 51.4
MELO3C031172.2 Cucumis melo HOM05D003449 ORTHO05D004133 7.7e-103 378.3 383 51.4
THA.LOC104800937 Tarenaya hassleriana HOM05D003449 ORTHO05D004133 1.7e-102 377.1 368 51.4
THA.LOC104800934 Tarenaya hassleriana HOM05D003449 ORTHO05D004133 1.5e-101 374.0 371 51.8
C04p17950 Brassica napus HOM05D003449 ORTHO05D004133 9.4e-101 371.3 366 51.6
BcaC02g11292 Brassica carinata HOM05D003449 ORTHO05D004133 3.6e-100 369.4 366 51.4
Thhalv10017878m.g Eutrema salsugineum HOM05D003449 ORTHO05D004133 1.4e-99 367.5 366 52.2
PSO675G3785 Papaver somniferum HOM05D003449 ORTHO05D004133 5.2e-99 365.5 374 48.9
BolC4t23342H Brassica oleracea HOM05D003449 ORTHO05D004133 2.0e-98 363.6 349 52.4
Carub.0004s1301 Capsella rubella HOM05D003449 ORTHO05D004133 7.5e-98 361.7 374 50.3
vmacro17029 Vaccinium macrocarpon HOM05D003449 ORTHO05D004133 7.5e-98 361.7 328 55.2
DCAR_011557 Daucus carota HOM05D003449 ORTHO05D004133 1.7e-97 360.5 374 51.3
Thhalv10016528m.g Eutrema salsugineum HOM05D003449 ORTHO05D004133 2.2e-97 360.1 364 50.5
A05p13710 Brassica napus HOM05D003449 ORTHO05D004133 6.3e-97 358.6 350 52.0
AUR62023816 Chenopodium quinoa HOM05D003449 ORTHO05D004133 1.1e-96 357.8 370 49.5
SGA_v2.0_scaffold37G14903 Striga asiatica HOM05D003449 ORTHO05D004133 2.4e-96 356.7 372 50.5
Duzib128G1428 Durio zibethinus HOM05D003449 ORTHO05D004133 5.4e-96 355.5 374 49.5
Carub.0004s1315 Capsella rubella HOM05D003449 ORTHO05D004133 9.1e-96 354.8 368 49.7
Sp2g03830 Schrenkiella parvula HOM05D003449 ORTHO05D004133 9.1e-96 354.8 364 50.5
AT2G31865 Arabidopsis thaliana HOM05D003449 ORTHO05D004133 1.2e-95 354.4 377 48.5
CARHR125540 Cardamine hirsuta HOM05D003449 ORTHO05D004133 2.0e-95 353.6 352 51.1
EL10Ac1g02221 Beta vulgaris HOM05D003449 ORTHO05D004133 5.9e-95 352.1 374 47.9
BcaB02g10421 Brassica carinata HOM05D003449 ORTHO05D004133 7.7e-95 351.7 385 47.8
BraA05t20307Z Brassica rapa HOM05D003449 ORTHO05D004133 1.3e-94 350.9 349 51.0
COL.COLO4_20652 Corchorus olitorius HOM05D003449 ORTHO05D004133 1.1e-93 347.8 343 53.4
Carub.0004s1316 Capsella rubella HOM05D003449 ORTHO05D004133 1.5e-93 347.4 378 47.4
Manes.05G207700 Manihot esculenta HOM05D003449 ORTHO05D004133 1.9e-93 347.1 313 55.3
BraA04t17933Z Brassica rapa HOM05D003449 ORTHO05D004133 3.3e-93 346.3 374 48.4
Carub.0004s1317 Capsella rubella HOM05D003449 ORTHO05D004133 3.3e-93 346.3 329 54.7
AL4G27150 Arabidopsis lyrata HOM05D003449 ORTHO05D004133 4.2e-93 345.9 374 48.1
AUR62002371 Chenopodium quinoa HOM05D003449 ORTHO05D004133 2.1e-92 343.6 386 46.9
BcaB06g28570 Brassica carinata HOM05D003449 ORTHO05D004133 3.6e-92 342.8 364 49.5
FAN23G2573 Fragaria x ananassa HOM05D003449 ORTHO05D004133 1.4e-91 340.9 306 57.8
BraA04t17975Z Brassica rapa HOM05D003449 ORTHO05D004133 1.8e-91 340.5 376 47.9
Ah.06g182940 Amaranthus hybridus HOM05D003449 ORTHO05D004133 2.3e-91 340.1 382 46.3
C04p60860 Brassica napus HOM05D003449 ORTHO05D004133 2.3e-91 340.1 371 47.4
C04p61430 Brassica napus HOM05D003449 ORTHO05D004133 1.2e-90 337.8 392 46.9
BolC4t27627H Brassica oleracea HOM05D003449 ORTHO05D004133 1.2e-90 337.8 392 46.9
FAN26G2706 Fragaria x ananassa HOM05D003449 ORTHO05D004133 1.5e-90 337.4 306 57.2
BcaC02g07962 Brassica carinata HOM05D003449 ORTHO05D004133 2.6e-90 336.7 392 46.7
BolC4t27577H Brassica oleracea HOM05D003449 ORTHO05D004133 2.7e-87 326.6 377 45.6
Hund22678 Selenicereus undatus HOM05D003449 ORTHO05D004133 2.9e-86 323.2 305 54.1
Solyc12g096610.2 Solanum lycopersicum HOM05D003449 ORTHO05D004133 6.6e-86 322.0 287 58.5
Aa31sc989G10 Aethionema arabicum HOM05D003449 ORTHO05D004133 1.5e-85 320.9 321 50.5
AUR62002491 Chenopodium quinoa HOM05D003449 ORTHO05D004133 2.5e-85 320.1 533 38.1
Pp3c4_17510 Physcomitrium patens HOM05D003449 ORTHO05D004133 1.2e-84 317.8 391 43.7
Mapoly0009s0113 Marchantia polymorpha HOM05D003449 ORTHO05D004133 2.8e-84 316.6 363 44.1
SMO364G0163 Selaginella moellendorffii HOM05D003449 ORTHO05D004133 1.7e-81 307.4 378 43.4
AL4G27130 Arabidopsis lyrata HOM05D003449 ORTHO05D004133 2.9e-81 306.6 365 45.8
BcaB06g28530 Brassica carinata HOM05D003449 ORTHO05D004133 1.2e-79 301.2 371 44.5
CBR_g41704 Chara braunii HOM05D000019 ORTHO05D000048 3.9e-78 296.2 495 37.4
CARHR125360 Cardamine hirsuta HOM05D003449 ORTHO05D004133 5.6e-77 292.4 309 49.2
SMO351G0652 Selaginella moellendorffii HOM05D003449 ORTHO05D004133 2.1e-76 290.4 388 42.3
unitig_92.g28210 Utricularia gibba HOM05D003449 ORTHO05D004133 1.4e-72 277.7 263 53.2
Thecc.05G001100 Theobroma cacao HOM05D003449 ORTHO05D004133 2.4e-72 276.9 201 63.2
CARHR125550 Cardamine hirsuta HOM05D003449 ORTHO05D004133 3.2e-72 276.6 308 46.1
Thhalv10016696m.g Eutrema salsugineum HOM05D003449 ORTHO05D004133 3.2e-72 276.6 217 60.8
FvH4_1g00120 Fragaria vesca HOM05D003449 ORTHO05D004133 3.2e-72 276.6 214 62.6
A04p24530 Brassica napus HOM05D003449 ORTHO05D004133 3.0e-70 270.0 312 46.2
Cpa.g.sc9.246 Carica papaya HOM05D003449 ORTHO05D004133 1.9e-69 267.3 308 45.8
Pp3c3_12290 Physcomitrium patens HOM05D003449 ORTHO05D004133 2.5e-69 266.9 356 40.2
ClCG06G009820 Citrullus lanatus HOM05D003449 ORTHO05D004133 2.1e-68 263.8 192 66.7
BcaB06g28446 Brassica carinata HOM05D003449 ORTHO05D004133 2.2e-65 253.8 358 39.9
TAR362G0102 Trochodendron aralioides HOM05D003449 ORTHO05D003376 3.5e-63 246.5 232 54.7
A04p24130 Brassica napus HOM05D003449 ORTHO05D004133 8.6e-62 241.9 210 54.3
Rhsim09G0002700 Rhododendron simsii HOM05D003449 ORTHO05D004133 7.1e-56 222.2 147 71.4
AUR62023694 Chenopodium quinoa HOM05D003449 ORTHO05D004133 1.8e-51 207.6 145 66.9
AUR62023697 Chenopodium quinoa HOM05D003449 ORTHO05D004133 5.8e-42 176.0 189 50.3
Ca_14388_v3 Cicer arietinum L. HOM05D003449 ORTHO05D004133 1.3e-41 174.9 185 51.9
Ca_14389_v3 Cicer arietinum L. HOM05D003449 ORTHO05D004133 3.9e-30 136.7 123 52.0
Gohir.D04G099801 Gossypium hirsutum HOM05D003449 ORTHO05D004133 3.1e-27 127.1 107 53.3
CARHR125560 Cardamine hirsuta HOM05D003449 ORTHO05D004133 2.0e-26 124.4 102 53.9
Gorai.009G402700 Gossypium raimondii HOM05D003449 ORTHO05D004133 2.5e-16 90.9 124 38.7
ClCG06G009800 Citrullus lanatus HOM05D003449 ORTHO05D004133 2.7e-15 87.4 125 40.0
EL10Ac4g08586 Beta vulgaris HOM05D003449 ORTHO05D000563 6.7e-14 82.8 67 55.2
MD02G1000300 Malus domestica HOM05D003449 ORTHO05D004133 2.0e-13 81.3 76 47.4
Sp2g03840 Schrenkiella parvula HOM05D003449 ORTHO05D050192 5.3e-11 73.2 44 81.8
Glyma.15G017200 Glycine max HOM05D003449 ORTHO05D214706 9.1e-11 72.4 249 29.3
PSO302G0027 Papaver somniferum HOM05D003449 ORTHO05D050192 9.1e-11 72.4 42 81.0
unitig_92.g28209 Utricularia gibba HOM05D003449 ORTHO05D004133 1.3e-09 68.6 60 48.3
CARHR125370 Cardamine hirsuta HOM05D003449 ORTHO05D004133 5.5e-08 63.2 59 47.5
Os03g0843900 Oryza sativa ssp. japonica HOM05D003449 ORTHO05D004133 1.8e-06 58.2 58 37.9


User provided reference genes

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