Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1010.1 Capsicum annuum HOM05D004459 ORTHO05D005178 5.7e-46 187.2 92 100.0
CAN.G874.13 Capsicum annuum HOM05D004459 ORTHO05D005178 3.3e-38 161.4 87 90.8
Solyc06g083260.3 Solanum lycopersicum HOM05D004459 ORTHO05D005178 1.1e-36 156.4 87 87.4
Sopen06g034640 Solanum pennellii HOM05D004459 ORTHO05D005178 1.1e-36 156.4 87 87.4
PGSC0003DMG401020104 Solanum tuberosum HOM05D004459 ORTHO05D005178 1.1e-36 156.4 87 87.4
Nitab4.5_0002671g0020 Nicotiana tabacum HOM05D004459 ORTHO05D005178 5.3e-36 154.1 87 85.1
Nitab4.5_0003020g0110 Nicotiana tabacum HOM05D004459 ORTHO05D005178 5.3e-36 154.1 87 85.1
Peaxi162Scf00487g00620 Petunia axillaris HOM05D004459 ORTHO05D005178 3.8e-34 147.9 87 81.6
Nitab4.5_0000403g0040 Nicotiana tabacum HOM05D004459 ORTHO05D005178 1.1e-33 146.4 87 80.5
Nitab4.5_0005866g0010 Nicotiana tabacum HOM05D004459 ORTHO05D005178 1.1e-33 146.4 87 80.5
Aqoxy2G03940 Aquilegia oxysepala HOM05D004459 ORTHO05D005178 2.5e-33 145.2 87 78.2
Nn3g20066 Nelumbo nucifera HOM05D004459 ORTHO05D005178 2.5e-33 145.2 87 78.2
DCAR_000515 Daucus carota HOM05D004459 ORTHO05D005178 4.2e-33 144.4 86 77.9
unitig_0.g407 Utricularia gibba HOM05D004459 ORTHO05D005178 4.2e-33 144.4 87 78.2
PGR083G1823 Punica granatum HOM05D004459 ORTHO05D005178 5.5e-33 144.1 87 77.0
PSO017G6853 Papaver somniferum HOM05D004459 ORTHO05D005178 7.2e-33 143.7 87 75.9
PSO063G5689 Papaver somniferum HOM05D004459 ORTHO05D005178 7.2e-33 143.7 87 75.9
TAR365G0904 Trochodendron aralioides HOM05D004459 ORTHO05D005178 1.2e-32 142.9 86 76.7
SalBow6G5468 Salvia bowleyana HOM05D004459 ORTHO05D005178 1.6e-32 142.5 87 75.9
Cc01_g16560 Coffea canephora HOM05D004459 ORTHO05D005178 2.1e-32 142.1 87 75.9
AUR62001146 Chenopodium quinoa HOM05D004459 ORTHO05D005178 2.7e-32 141.7 87 75.9
AUR62016530 Chenopodium quinoa HOM05D004459 ORTHO05D005178 2.7e-32 141.7 87 75.9
Phvul.007G143100 Phaseolus vulgaris HOM05D004459 ORTHO05D005178 2.7e-32 141.7 89 77.5
Phvul.008G132450 Phaseolus vulgaris HOM05D004459 ORTHO05D005178 2.7e-32 141.7 89 77.5
Hma1.2p1_0149F.1_g066510 Hydrangea macrophylla HOM05D004459 ORTHO05D005178 3.6e-32 141.4 90 72.2
vmacro14724 Vaccinium macrocarpon HOM05D004459 ORTHO05D005178 3.6e-32 141.4 87 74.7
Zm00001eb317580 Zea mays HOM05D004459 ORTHO05D005178 3.6e-32 141.4 87 74.7
HPP92_001407 Vanilla planifolia HOM05D004459 ORTHO05D005178 4.7e-32 141.0 87 73.6
GSVIVG01006388001 Vitis vinifera HOM05D004459 ORTHO05D005178 4.7e-32 141.0 87 75.9
MSTRG.20974 Avicennia marina HOM05D004459 ORTHO05D005178 6.1e-32 140.6 87 78.2
EL10Ac5g11649 Beta vulgaris HOM05D004459 ORTHO05D005178 6.1e-32 140.6 87 75.9
EL10Ac7g17932 Beta vulgaris HOM05D004459 ORTHO05D005178 6.1e-32 140.6 87 75.9
MBI07_g27657_MAGBIO Magnolia biondii HOM05D004459 ORTHO05D005178 6.1e-32 140.6 87 75.9
Glyma.08G347600 Glycine max HOM05D004459 ORTHO05D005178 8.0e-32 140.2 89 76.4
SGA_v2.0_scaffold104G30089 Striga asiatica HOM05D004459 ORTHO05D005178 8.0e-32 140.2 87 74.7
CSS0012359 Camellia sinensis var. sinensis HOM05D004459 ORTHO05D005178 1.0e-31 139.8 87 73.6
ECA236G4121 Erigeron canadensis HOM05D004459 ORTHO05D005178 1.0e-31 139.8 87 72.4
Ah.08g214750 Amaranthus hybridus HOM05D004459 ORTHO05D005178 1.4e-31 139.4 87 74.7
MSTRG.17987 Avicennia marina HOM05D004459 ORTHO05D005178 1.4e-31 139.4 87 74.7
Eucgr.H00759 Eucalyptus grandis HOM05D004459 ORTHO05D005178 1.4e-31 139.4 87 73.6
HanXRQChr04g0108291 Helianthus annuus HOM05D004459 ORTHO05D005178 1.4e-31 139.4 87 72.4
Lsat_1_v5_gn_5_177641 Lactuca sativa HOM05D004459 ORTHO05D005178 1.4e-31 139.4 87 72.4
Actinidia23765 Actinidia chinensis HOM05D004459 ORTHO05D005178 1.8e-31 139.0 87 77.0
ECA248G3763 Erigeron canadensis HOM05D004459 ORTHO05D005178 1.8e-31 139.0 87 72.4
FAN27G2700 Fragaria x ananassa HOM05D004459 ORTHO05D005178 1.8e-31 139.0 89 74.2
Lalb_Chr01g0022191 Lupinus albus HOM05D004459 ORTHO05D005178 1.8e-31 139.0 89 74.2
Glyma.18G159000 Glycine max HOM05D004459 ORTHO05D005178 2.3e-31 138.7 89 75.3
CANSAT01G2987 Cannabis sativa HOM05D004459 ORTHO05D005178 5.2e-31 137.5 89 73.0
Os09g0504400 Oryza sativa ssp. japonica HOM05D004459 ORTHO05D005178 5.2e-31 137.5 87 72.4
MELO3C023189.2 Cucumis melo HOM05D004459 ORTHO05D005178 6.7e-31 137.1 89 74.2
CsaV3_2G019680 Cucumis sativus L. HOM05D004459 ORTHO05D005178 6.7e-31 137.1 89 74.2
TWI36G0336 Tripterygium wilfordii HOM05D004459 ORTHO05D005178 6.7e-31 137.1 89 73.0
FAN24G3552 Fragaria x ananassa HOM05D004459 ORTHO05D005178 8.8e-31 136.7 89 73.0
MD10G1157700 Malus domestica HOM05D004459 ORTHO05D005178 8.8e-31 136.7 89 73.0
MD10G1158300 Malus domestica HOM05D004459 ORTHO05D005178 8.8e-31 136.7 89 73.0
Psat3g149520 Pisum sativum HOM05D004459 ORTHO05D005178 8.8e-31 136.7 89 71.9
RcHm_v2.0_Chr6g0283781 Rosa chinensis HOM05D004459 ORTHO05D005178 1.2e-30 136.3 89 73.0
Actinidia09461 Actinidia chinensis HOM05D004459 ORTHO05D005178 1.5e-30 136.0 87 77.0
Prupe.8G196700 Prunus persica HOM05D004459 ORTHO05D005178 1.5e-30 136.0 89 73.0
arahy.Tifrunner.gnm1.ann1.J5WB5S Arachis hypogaea HOM05D004459 ORTHO05D005178 2.0e-30 135.6 89 73.0
Cfa021481 Carpinus fangiana HOM05D004459 ORTHO05D005178 2.0e-30 135.6 89 71.9
Duzib133G1079 Durio zibethinus HOM05D004459 ORTHO05D005178 2.6e-30 135.2 89 73.0
Lj1g0001756 Lotus japonicus HOM05D004459 ORTHO05D005178 2.6e-30 135.2 89 70.8
Thecc.01G217400 Theobroma cacao HOM05D004459 ORTHO05D005178 3.3e-30 134.8 89 73.0
Manes.13G050900 Manihot esculenta HOM05D004459 ORTHO05D005178 5.7e-30 134.0 89 71.9
Potri.014G194900 Populus trichocarpa HOM05D004459 ORTHO05D005178 5.7e-30 134.0 89 69.7
Sc05g0001910 Simmondsia chinensis HOM05D004459 ORTHO05D005178 5.7e-30 134.0 88 70.5
COL.COLO4_16102 Corchorus olitorius HOM05D004459 ORTHO05D005178 7.5e-30 133.7 89 71.9
HanXRQChr01g0015361 Helianthus annuus HOM05D004459 ORTHO05D005178 7.5e-30 133.7 87 69.0
Medtr7g055650 Medicago truncatula HOM05D004459 ORTHO05D005178 9.7e-30 133.3 88 71.6
Sed0021622 Sechium edule HOM05D004459 ORTHO05D005178 9.7e-30 133.3 89 70.8
CiPaw.13G050600 Carya illinoinensis HOM05D004459 ORTHO05D005178 1.3e-29 132.9 89 70.8
QL02p059784 Quercus lobata HOM05D004459 ORTHO05D005178 1.3e-29 132.9 89 71.9
Sabra02G0187900 Salix brachista HOM05D004459 ORTHO05D005178 1.3e-29 132.9 88 72.7
QL02p059745 Quercus lobata HOM05D004459 ORTHO05D005178 1.7e-29 132.5 89 70.8
Gorai.001G104300 Gossypium raimondii HOM05D004459 ORTHO05D005178 2.2e-29 132.1 89 70.8
TPR.G6416 Trifolium pratense HOM05D004459 ORTHO05D005178 2.2e-29 132.1 89 69.7
Gohir.D07G096900 Gossypium hirsutum HOM05D004459 ORTHO05D005178 2.8e-29 131.7 89 70.8
Potri.002G246800 Populus trichocarpa HOM05D004459 ORTHO05D005178 2.8e-29 131.7 89 71.9
Ciclev10021820m.g Citrus clementina HOM05D004459 ORTHO05D005178 3.7e-29 131.3 89 69.7
Gohir.A07G092400 Gossypium hirsutum HOM05D004459 ORTHO05D005178 3.7e-29 131.3 89 70.8
Sp2g19010 Schrenkiella parvula HOM05D004459 ORTHO05D005178 4.8e-29 131.0 89 69.7
Atru.chr6.1442 Acer truncatum HOM05D004459 ORTHO05D005178 6.3e-29 130.6 89 69.7
Gohir.A11G140100 Gossypium hirsutum HOM05D004459 ORTHO05D005178 6.3e-29 130.6 89 70.8
Gohir.D11G146500 Gossypium hirsutum HOM05D004459 ORTHO05D005178 6.3e-29 130.6 89 70.8
Gorai.007G156900 Gossypium raimondii HOM05D004459 ORTHO05D005178 6.3e-29 130.6 89 70.8
Lalb_Chr19g0125891 Lupinus albus HOM05D004459 ORTHO05D005178 6.3e-29 130.6 89 68.5
ATR0561G002 Amborella trichopoda HOM05D004459 ORTHO05D005178 8.2e-29 130.2 87 72.4
AT5G48630 Arabidopsis thaliana HOM05D004459 ORTHO05D005178 1.4e-28 129.4 89 69.7
AL8G21650 Arabidopsis lyrata HOM05D004459 ORTHO05D005178 1.8e-28 129.0 89 69.7
CARHR183330 Cardamine hirsuta HOM05D004459 ORTHO05D005178 1.8e-28 129.0 89 69.7
BcaB07g30037 Brassica carinata HOM05D004459 ORTHO05D005178 2.4e-28 128.6 89 69.7
Carub.0005s0820 Capsella rubella HOM05D004459 ORTHO05D005178 2.4e-28 128.6 89 68.5
CiPaw.14G040200 Carya illinoinensis HOM05D004459 ORTHO05D005178 4.1e-28 127.9 89 67.4
Carub.0008s0830 Capsella rubella HOM05D004459 ORTHO05D005178 5.3e-28 127.5 89 67.4
Thhalv10004814m.g Eutrema salsugineum HOM05D004459 ORTHO05D005178 1.6e-27 125.9 89 66.3
unitig_60.g25580 Utricularia gibba HOM05D000036 ORTHO05D001038 1.6e-27 125.9 87 69.0
THA.LOC104822487 Tarenaya hassleriana HOM05D004459 ORTHO05D005178 2.0e-27 125.6 89 65.2
BolC2t11742H Brassica oleracea HOM05D004459 ORTHO05D005178 3.5e-27 124.8 89 65.2
BcaC03g17667 Brassica carinata HOM05D004459 ORTHO05D005178 4.5e-27 124.4 89 65.2
BcaC03g17668 Brassica carinata HOM05D004459 ORTHO05D005178 4.5e-27 124.4 89 66.3
A02p37650 Brassica napus HOM05D004459 ORTHO05D005178 4.5e-27 124.4 89 65.2
C02p56750 Brassica napus HOM05D004459 ORTHO05D005178 4.5e-27 124.4 89 66.3
BolC2t11743H Brassica oleracea HOM05D004459 ORTHO05D005178 4.5e-27 124.4 89 66.3
BraA02t08747Z Brassica rapa HOM05D004459 ORTHO05D005178 4.5e-27 124.4 89 65.2
BraA02t08748Z Brassica rapa HOM05D004459 ORTHO05D005178 4.5e-27 124.4 89 66.3
Sp2g19020 Schrenkiella parvula HOM05D004459 ORTHO05D005178 4.5e-27 124.4 89 66.3
CARHR183320 Cardamine hirsuta HOM05D004459 ORTHO05D005178 5.9e-27 124.0 89 65.2
AL8G21660 Arabidopsis lyrata HOM05D004459 ORTHO05D005178 7.7e-27 123.6 89 65.2
BcaB07g30038 Brassica carinata HOM05D004459 ORTHO05D005178 7.7e-27 123.6 89 66.3
C02p56740 Brassica napus HOM05D004459 ORTHO05D005178 1.0e-26 123.2 89 64.0
AT5G48640 Arabidopsis thaliana HOM05D004459 ORTHO05D005178 1.3e-26 122.9 89 65.2
THA.LOC104822488 Tarenaya hassleriana HOM05D004459 ORTHO05D005178 1.3e-26 122.9 89 65.2
Aa31LG6G9700 Aethionema arabicum HOM05D004459 ORTHO05D005178 1.7e-26 122.5 89 65.2
Carub.0005s0821 Capsella rubella HOM05D004459 ORTHO05D005178 5.0e-26 120.9 89 62.9
Pp3c23_12870 Physcomitrium patens HOM05D004459 ORTHO05D005178 5.0e-26 120.9 88 64.8
AL8G21630 Arabidopsis lyrata HOM05D004459 ORTHO05D005178 6.5e-26 120.6 89 65.2
Carub.0008s0831 Capsella rubella HOM05D004459 ORTHO05D005178 1.1e-25 119.8 89 61.8
A02p37660 Brassica napus HOM05D004459 ORTHO05D005178 1.5e-25 119.4 89 66.3
Mapoly0005s0080 Marchantia polymorpha HOM05D004459 ORTHO05D005178 1.5e-25 119.4 87 62.1
A06p39040 Brassica napus HOM05D004459 ORTHO05D005178 5.5e-25 117.5 89 61.8
BraA06t26817Z Brassica rapa HOM05D004459 ORTHO05D005178 5.5e-25 117.5 89 61.8
BcaC06g30774 Brassica carinata HOM05D004459 ORTHO05D005178 7.2e-25 117.1 89 61.8
C07p39300 Brassica napus HOM05D004459 ORTHO05D005178 7.2e-25 117.1 89 61.8
AagrBONN_evm.TU.Sc2ySwM_344.4413 Anthoceros agrestis HOM05D004459 ORTHO05D005178 9.4e-25 116.7 87 62.1
BolC7t44450H Brassica oleracea HOM05D004459 ORTHO05D005178 9.4e-25 116.7 89 60.7
Pp3c24_1910 Physcomitrium patens HOM05D004459 ORTHO05D005178 2.7e-24 115.2 88 61.4
Migut.D02511 Erythranthe guttata HOM05D004459 ORTHO05D005178 8.0e-24 113.6 68 77.9
Lj2A1122G39 Lonicera japonica HOM05D004459 ORTHO05D005178 1.8e-23 112.5 86 65.1
FAN15G2342 Fragaria x ananassa HOM05D004459 ORTHO05D005178 2.0e-22 109.0 87 63.2
BolC2t11738H Brassica oleracea HOM05D004459 ORTHO05D005178 3.4e-22 108.2 96 57.3
SMO147G0024 Selaginella moellendorffii HOM05D004459 ORTHO05D005178 7.5e-22 107.1 87 54.0
Haze_03347 Corylus avellana HOM05D004459 ORTHO05D005178 9.8e-22 106.7 87 62.1
Lsat_1_v5_gn_3_115720 Lactuca sativa HOM05D004459 ORTHO05D005178 1.3e-21 106.3 87 60.9
CDE11G0844 Ceratophyllum demersum HOM05D001606 ORTHO05D002266 3.7e-21 104.8 59 81.4
THA.LOC104818977 Tarenaya hassleriana HOM05D004459 ORTHO05D005178 2.4e-20 102.1 128 46.1
BolC2t11741H Brassica oleracea HOM05D004459 ORTHO05D005178 1.7e-18 95.9 67 68.7
Eucgr.L03048 Eucalyptus grandis HOM05D004459 ORTHO05D005178 2.9e-18 95.1 57 73.7
C02p56710 Brassica napus HOM05D004459 ORTHO05D005178 8.5e-18 93.6 98 52.0
ClCG02G000030 Citrullus lanatus HOM05D004459 ORTHO05D005178 2.1e-16 89.0 54 75.9
arahy.Tifrunner.gnm1.ann1.WFM4SD Arachis hypogaea HOM05D004459 ORTHO05D005178 1.4e-15 86.3 50 78.0
Hund05584 Selenicereus undatus HOM05D004459 ORTHO05D005178 3.0e-15 85.1 49 77.6
MD05G1169500 Malus domestica HOM05D004459 ORTHO05D005178 3.7e-13 78.2 53 69.8
Duzib138G0860 Durio zibethinus HOM05D004459 ORTHO05D005178 8.3e-13 77.0 87 48.3
Cre03.g174476 Chlamydomonas reinhardtii HOM05D004459 ORTHO05D005178 7.0e-12 73.9 88 37.5
Lsat_1_v5_gn_5_190341 Lactuca sativa HOM05D004459 ORTHO05D007437 1.2e-11 73.2 49 67.3
Hund18441 Selenicereus undatus HOM05D004459 ORTHO05D005178 3.5e-11 71.6 50 66.0
SHI14518 Sapria himalayana HOM05D004459 ORTHO05D005178 2.3e-10 68.9 50 54.0
BolC2t11736H Brassica oleracea HOM05D004459 ORTHO05D005178 1.5e-09 66.2 47 63.8
PRCOL_00002525 Prasinoderma coloniale HOM05D004459 ORTHO05D005178 4.3e-09 64.7 87 36.8
Lsat_1_v5_gn_3_32941 Lactuca sativa HOM05D000188 ORTHO05D007437 9.5e-09 63.5 63 50.8
Haze_26318 Corylus avellana HOM05D004459 ORTHO05D005178 2.1e-08 62.4 90 31.1
Dinv14524 Davidia involucrata HOM05D004459 ORTHO05D005178 1.4e-07 59.7 37 70.3
VMungo1383G0758 Vigna mungo HOM05D004459 ORTHO05D005178 1.5e-06 56.2 39 74.4
FvH4_2g18390 Fragaria vesca HOM05D004459 ORTHO05D005178 4.4e-06 54.7 39 69.2
Thhalv10004803m.g Eutrema salsugineum HOM05D004459 ORTHO05D005178 9.8e-06 53.5 42 59.5


User provided reference genes

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