Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G101.17 Capsicum annuum HOM05D004092 ORTHO05D005448 5.5e-171 604.4 337 100.0
CAN.G851.30 Capsicum annuum HOM05D004092 ORTHO05D005448 1.8e-153 546.2 329 92.4
Nitab4.5_0005777g0060 Nicotiana tabacum HOM05D004092 ORTHO05D005448 5.5e-131 471.5 325 81.8
Solyc04g074090.4 Solanum lycopersicum HOM05D004092 ORTHO05D005448 1.5e-128 463.4 325 81.2
Nitab4.5_0000232g0210 Nicotiana tabacum HOM05D004092 ORTHO05D005448 7.0e-126 454.5 325 80.9
vmacro09775 Vaccinium macrocarpon HOM05D004092 ORTHO05D005448 1.7e-108 396.7 325 68.3
Oeu051991.1 Olea europaea HOM05D004092 ORTHO05D005448 8.9e-105 384.4 325 67.1
Peaxi162Scf00041g01738 Petunia axillaris HOM05D004092 ORTHO05D005448 4.4e-104 382.1 325 68.0
Dinv19600 Davidia involucrata HOM05D004092 ORTHO05D005448 9.2e-102 374.4 323 67.2
MSTRG.7071 Avicennia marina HOM05D004092 ORTHO05D005448 6.0e-101 371.7 325 66.2
RhsimUnG0180500 Rhododendron simsii HOM05D004092 ORTHO05D005448 1.5e-99 367.1 327 64.5
THA.LOC104808127 Tarenaya hassleriana HOM05D004092 ORTHO05D005448 1.9e-99 366.7 328 62.5
Actinidia35425 Actinidia chinensis HOM05D004092 ORTHO05D005448 2.5e-99 366.3 321 67.3
CSS0013287 Camellia sinensis var. sinensis HOM05D004092 ORTHO05D005448 4.3e-99 365.5 330 65.5
Hma1.2p1_0334F.1_g128570 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 9.5e-99 364.4 324 65.4
SalBow8G5525 Salvia bowleyana HOM05D004092 ORTHO05D005448 6.2e-98 361.7 325 62.2
SalBow6G0067 Salvia bowleyana HOM05D004092 ORTHO05D005448 1.1e-97 360.9 325 60.9
Lju337C5G4 Lonicera japonica HOM05D004092 ORTHO05D005448 1.8e-97 360.1 325 63.7
Cc05_g16260 Coffea canephora HOM05D004092 ORTHO05D005448 4.4e-96 355.5 323 63.5
GSVIVG01036806001 Vitis vinifera HOM05D004092 ORTHO05D005448 1.3e-95 354.0 330 62.4
Ciclev10004308m.g Citrus clementina HOM05D004092 ORTHO05D005448 1.7e-95 353.6 327 63.6
Cfa005512 Carpinus fangiana HOM05D004092 ORTHO05D005448 2.2e-95 353.2 327 63.9
Migut.M01537 Erythranthe guttata HOM05D004092 ORTHO05D005448 2.2e-95 353.2 325 62.2
Glyma.10G245700 Glycine max HOM05D004092 ORTHO05D005448 2.9e-95 352.8 325 61.2
Glyma.12G070100 Glycine max HOM05D004092 ORTHO05D005448 4.9e-95 352.1 325 61.2
Nn5g27645 Nelumbo nucifera HOM05D004092 ORTHO05D005448 4.9e-95 352.1 326 61.0
VMungo1127G2087 Vigna mungo HOM05D004092 ORTHO05D005448 4.9e-95 352.1 322 61.5
Gohir.A13G122400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 1.1e-94 350.9 329 59.9
Atru.chr1.122 Acer truncatum HOM05D004092 ORTHO05D005448 1.9e-94 350.1 322 62.4
Manes.14G011200 Manihot esculenta HOM05D004092 ORTHO05D005448 2.4e-94 349.7 323 61.0
Duzib213G0752 Durio zibethinus HOM05D004092 ORTHO05D005448 3.2e-94 349.4 329 59.9
QL04p079824 Quercus lobata HOM05D004092 ORTHO05D005448 1.2e-93 347.4 324 63.3
Phvul.011G076150 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 2.1e-93 346.7 325 60.0
Phvul.L001854 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 2.1e-93 346.7 325 60.0
QL04p080030 Quercus lobata HOM05D004092 ORTHO05D005448 2.7e-93 346.3 324 63.0
arahy.Tifrunner.gnm1.ann1.R5WWIH Arachis hypogaea HOM05D004092 ORTHO05D005448 7.8e-93 344.7 329 60.5
TAR362G1264 Trochodendron aralioides HOM05D004092 ORTHO05D005448 1.3e-92 344.0 323 62.2
arahy.Tifrunner.gnm1.ann1.7JS6EV Arachis hypogaea HOM05D004092 ORTHO05D005448 2.3e-92 343.2 329 60.2
Prupe.4G136600 Prunus persica HOM05D004092 ORTHO05D005448 3.0e-92 342.8 321 62.3
TWI38G0748 Tripterygium wilfordii HOM05D004092 ORTHO05D005448 5.1e-92 342.0 332 59.0
CiPaw.11G063100 Carya illinoinensis HOM05D004092 ORTHO05D005448 8.6e-92 341.3 328 62.5
Hma1.2p1_0334F.1_g128560 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 1.5e-91 340.5 388 55.2
MD05G1223600 Malus domestica HOM05D004092 ORTHO05D005448 3.3e-91 339.3 328 59.8
FAN21G2977 Fragaria x ananassa HOM05D004092 ORTHO05D005448 5.6e-91 338.6 326 59.5
COL.COLO4_07946 Corchorus olitorius HOM05D004092 ORTHO05D005448 9.5e-91 337.8 329 58.4
FvH4_3g15370 Fragaria vesca HOM05D004092 ORTHO05D005448 1.2e-90 337.4 326 59.5
ECA236G4689 Erigeron canadensis HOM05D004092 ORTHO05D005448 2.1e-90 336.7 325 58.8
CANSAT80G2562 Cannabis sativa HOM05D004092 ORTHO05D005448 6.2e-90 335.1 324 59.0
Gohir.D13G126400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 8.1e-90 334.7 329 58.4
FAN16G3313 Fragaria x ananassa HOM05D004092 ORTHO05D005448 1.1e-89 334.3 326 59.2
MD10G1205100 Malus domestica HOM05D004092 ORTHO05D005448 1.4e-89 334.0 328 61.6
Lalb_Chr03g0031641 Lupinus albus HOM05D004092 ORTHO05D005448 2.3e-89 333.2 329 58.1
FAN11G0738 Fragaria x ananassa HOM05D004092 ORTHO05D005448 5.2e-89 332.0 326 58.9
Gorai.013G141600 Gossypium raimondii HOM05D004092 ORTHO05D005448 8.9e-89 331.3 328 57.3
Lalb_Chr01g0007101 Lupinus albus HOM05D004092 ORTHO05D005448 2.0e-88 330.1 327 57.5
Thecc.07G169400 Theobroma cacao HOM05D004092 ORTHO05D005448 3.4e-88 329.3 329 56.5
Ca_07696_v3 Cicer arietinum L. HOM05D004092 ORTHO05D005448 4.4e-88 328.9 330 60.9
EL10Ac2g03277 Beta vulgaris HOM05D004092 ORTHO05D005448 5.8e-88 328.6 330 57.9
RcHm_v2.0_Chr5g0025821 Rosa chinensis HOM05D004092 ORTHO05D005448 5.8e-88 328.6 326 57.7
SalBow6G4089 Salvia bowleyana HOM05D004092 ORTHO05D005448 5.8e-88 328.6 323 56.3
DCAR_026669 Daucus carota HOM05D004092 ORTHO05D005448 9.9e-88 327.8 325 59.7
Sabra05G0079500 Salix brachista HOM05D004092 ORTHO05D005448 1.3e-87 327.4 334 57.2
Eucgr.E01785 Eucalyptus grandis HOM05D004092 ORTHO05D005448 1.9e-86 323.6 324 57.4
SGA_v2.0_scaffold186G40203 Striga asiatica HOM05D004092 ORTHO05D005448 1.9e-86 323.6 328 58.8
Lsat_1_v5_gn_7_110180 Lactuca sativa HOM05D004092 ORTHO05D005448 2.4e-86 323.2 328 61.0
Psat3g124440 Pisum sativum HOM05D004092 ORTHO05D005448 2.4e-86 323.2 329 59.0
TPR.G6646 Trifolium pratense HOM05D004092 ORTHO05D005448 4.1e-86 322.4 329 59.3
Rhsim04G0123500 Rhododendron simsii HOM05D004092 ORTHO05D005448 3.5e-85 319.3 340 57.9
Potri.005G096900 Populus trichocarpa HOM05D004092 ORTHO05D005448 6.0e-85 318.5 332 56.6
unitig_32.g11083 Utricularia gibba HOM05D004092 ORTHO05D005448 6.0e-85 318.5 329 58.4
Lj1g0019540 Lotus japonicus HOM05D004092 ORTHO05D005448 7.8e-85 318.2 329 57.8
ClCG09G022650 Citrullus lanatus HOM05D004092 ORTHO05D005448 3.9e-84 315.8 327 56.0
Aqoxy3G03661 Aquilegia oxysepala HOM05D004092 ORTHO05D005448 1.5e-83 313.9 323 57.6
MBI18_g01899_MAGBIO Magnolia biondii HOM05D004092 ORTHO05D005448 7.3e-83 311.6 329 58.4
MELO3C012616.2 Cucumis melo HOM05D004092 ORTHO05D005448 9.6e-83 311.2 325 55.4
Sed0009567 Sechium edule HOM05D004092 ORTHO05D005448 1.2e-82 310.8 327 56.6
HanXRQChr11g0335681 Helianthus annuus HOM05D004092 ORTHO05D005448 4.7e-82 308.9 339 57.2
CsaV3_7G022820 Cucumis sativus L. HOM05D004092 ORTHO05D005448 6.2e-82 308.5 325 55.1
CDE01G0334 Ceratophyllum demersum HOM05D004092 ORTHO05D005448 1.2e-80 304.3 336 53.0
Haze_01704 Corylus avellana HOM05D004092 ORTHO05D005448 1.2e-80 304.3 287 63.4
PGR044G0523 Punica granatum HOM05D004092 ORTHO05D005448 3.4e-80 302.8 324 55.9
HPP92_004307 Vanilla planifolia HOM05D004092 ORTHO05D005448 2.1e-77 293.5 321 51.7
Aa31LG4G1850 Aethionema arabicum HOM05D004092 ORTHO05D005448 1.0e-76 291.2 324 53.7
AUR62026892 Chenopodium quinoa HOM05D004092 ORTHO05D005448 3.0e-76 289.7 321 53.3
FAN25G1415 Fragaria x ananassa HOM05D004092 ORTHO05D005448 8.7e-76 288.1 325 53.2
Medtr7g070240 Medicago truncatula HOM05D004092 ORTHO05D005448 7.3e-75 285.0 327 56.0
BcaC08g47477 Brassica carinata HOM05D004092 ORTHO05D005448 1.6e-74 283.9 330 53.6
C06p53020 Brassica napus HOM05D004092 ORTHO05D005448 1.6e-74 283.9 330 53.6
Thhalv10018125m.g Eutrema salsugineum HOM05D004092 ORTHO05D005448 3.6e-74 282.7 328 54.9
BcaB02g08669 Brassica carinata HOM05D004092 ORTHO05D005448 1.4e-73 280.8 329 52.0
AT1G79150 Arabidopsis thaliana HOM05D004092 ORTHO05D005448 1.8e-73 280.4 329 50.8
PSO782G4649 Papaver somniferum HOM05D004092 ORTHO05D005448 4.0e-73 279.3 344 49.7
BolC6t40319H Brassica oleracea HOM05D004092 ORTHO05D005448 2.0e-72 276.9 329 52.9
Carub.0002s2602 Capsella rubella HOM05D004092 ORTHO05D005448 2.0e-72 276.9 330 51.5
PSO063G0010 Papaver somniferum HOM05D004092 ORTHO05D005448 3.4e-72 276.2 344 49.7
ATR0763G063 Amborella trichopoda HOM05D004092 ORTHO05D005448 7.6e-72 275.0 330 50.6
CARHR072800 Cardamine hirsuta HOM05D004092 ORTHO05D005448 2.9e-71 273.1 324 54.9
A07p44270 Brassica napus HOM05D004092 ORTHO05D005448 1.1e-70 271.2 330 52.4
BraA07t31936Z Brassica rapa HOM05D004092 ORTHO05D005448 1.1e-70 271.2 330 52.4
AL2G39620 Arabidopsis lyrata HOM05D004092 ORTHO05D005448 5.1e-68 262.3 330 50.9
Sc08g0008610 Simmondsia chinensis HOM05D004092 ORTHO05D005448 9.6e-67 258.1 274 54.7
Sopen00g010230 Solanum pennellii HOM05D004092 ORTHO05D005448 1.6e-61 240.7 140 90.0
SEGI_30171 Sequoiadendron giganteum HOM05D004092 ORTHO05D005448 7.9e-61 238.4 335 44.5
AUR62016815 Chenopodium quinoa HOM05D004092 ORTHO05D005448 5.1e-60 235.7 331 47.1
PGR138G0002 Punica granatum HOM05D004092 ORTHO05D005448 1.9e-59 233.8 271 54.2
SHI21021 Sapria himalayana HOM05D004092 ORTHO05D005448 4.8e-58 229.2 316 45.6
Zm00001eb020130 Zea mays HOM05D004092 ORTHO05D005448 1.0e-55 221.5 344 42.4
BcaNung04898 Brassica carinata HOM05D004092 ORTHO05D005448 1.3e-55 221.1 240 54.2
Os06g0498500 Oryza sativa ssp. japonica HOM05D004092 ORTHO05D005448 2.5e-54 216.9 305 44.9
Rhsim04G0004800 Rhododendron simsii HOM05D004092 ORTHO05D005448 1.2e-53 214.5 144 75.0
AagrBONN_evm.TU.Sc2ySwM_117.3368 Anthoceros agrestis HOM05D004092 ORTHO05D005448 5.5e-46 189.1 360 39.4
SMO169G0313 Selaginella moellendorffii HOM05D004092 ORTHO05D005448 2.5e-43 180.3 321 40.8
Pp3c3_9760 Physcomitrium patens HOM05D004092 ORTHO05D005448 4.1e-41 172.9 352 36.1
Mapoly0001s0281 Marchantia polymorpha HOM05D004092 ORTHO05D005448 1.2e-40 171.4 343 36.7
Rhsim04G0004600 Rhododendron simsii HOM05D004092 ORTHO05D005448 2.9e-39 166.8 180 59.4
Eucgr.G02299 Eucalyptus grandis HOM05D004092 ORTHO05D005448 1.6e-37 161.0 189 50.8
Sp5g34210 Schrenkiella parvula HOM05D004092 ORTHO05D005448 5.7e-35 152.5 106 72.6
Sopen00g013090 Solanum pennellii HOM05D004092 ORTHO05D005448 7.4e-35 152.1 128 75.0
Actinidia37125 Actinidia chinensis HOM05D004092 ORTHO05D005448 2.9e-31 140.2 106 70.8
CBR_g30814 Chara braunii HOM05D004092 ORTHO05D005448 3.7e-26 123.2 449 27.8
BolC6t38166H Brassica oleracea HOM05D004092 ORTHO05D005448 8.2e-26 122.1 110 63.6
C06p30050 Brassica napus HOM05D004092 ORTHO05D005448 1.0e-23 115.2 108 61.1
BcaC08g45374 Brassica carinata HOM05D004092 ORTHO05D005448 1.1e-22 111.7 115 57.4
Actinidia37124 Actinidia chinensis HOM05D004092 ORTHO05D005448 1.4e-20 104.8 72 72.2
Eucgr.F00934 Eucalyptus grandis HOM05D004092 ORTHO05D005448 9.1e-17 92.0 62 71.0
MCO10G157 Micromonas commoda HOM05D004092 ORTHO05D005448 5.9e-16 89.4 395 25.6
Cfa022337 Carpinus fangiana HOM05D004092 ORTHO05D005448 1.0e-15 88.6 274 28.5
AL4G15030 Arabidopsis lyrata HOM05D001020 ORTHO05D001137 1.8e-12 77.8 177 38.4
A07p27270 Brassica napus HOM05D004092 ORTHO05D005448 7.5e-11 72.4 201 38.8
BcaB02g07203 Brassica carinata HOM05D004092 ORTHO05D005448 1.3e-10 71.6 65 60.0
BraA07t30370Z Brassica rapa HOM05D004092 ORTHO05D005448 1.7e-10 71.2 204 38.2
PRCOL_00003431 Prasinoderma coloniale HOM05D004092 ORTHO05D005448 3.7e-10 70.1 139 31.7
Rhsim04G0004900 Rhododendron simsii HOM05D004092 ORTHO05D005448 1.4e-09 68.2 55 63.6
QL04p079914 Quercus lobata HOM05D004092 ORTHO05D005448 3.2e-06 57.0 57 54.4
Phvul.L001640 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 7.2e-06 55.8 53 50.9
Phvul.L001940 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 7.2e-06 55.8 53 50.9


User provided reference genes

Program Settings