Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1008.49 Capsicum annuum HOM05D005248 ORTHO05D006409 3.9e-102 374.8 185 100.0
Nitab4.5_0000976g0180 Nicotiana tabacum HOM05D005248 ORTHO05D006409 1.0e-94 350.1 185 93.5
PGSC0003DMG400014171 Solanum tuberosum HOM05D005248 ORTHO05D006409 1.1e-91 340.1 185 90.3
Sopen03g037010 Solanum pennellii HOM05D005248 ORTHO05D006409 4.0e-91 338.2 185 89.7
Peaxi162Scf00314g00750 Petunia axillaris HOM05D005248 ORTHO05D006409 1.4e-80 303.1 183 82.5
Cc04_g05750 Coffea canephora HOM05D005248 ORTHO05D006409 2.5e-77 292.4 185 74.6
Dinv13708 Davidia involucrata HOM05D005248 ORTHO05D006409 1.8e-75 286.2 188 76.1
Nitab4.5_0010893g0020 Nicotiana tabacum HOM05D005248 ORTHO05D006409 5.3e-75 284.6 159 91.8
Oeu017204.1 Olea europaea HOM05D005248 ORTHO05D006409 4.2e-72 275.0 185 71.9
Hma1.2p1_0452F.1_g155900 Hydrangea macrophylla HOM05D005248 ORTHO05D006409 5.4e-72 274.6 188 72.3
Oeu051184.1 Olea europaea HOM05D005248 ORTHO05D006409 6.0e-71 271.2 185 72.4
SalBow1G4990 Salvia bowleyana HOM05D005248 ORTHO05D006409 6.0e-71 271.2 185 70.3
MSTRG.22815 Avicennia marina HOM05D005248 ORTHO05D006409 3.9e-70 268.5 185 71.9
SGA_v2.0_scaffold37G14670 Striga asiatica HOM05D005248 ORTHO05D006409 1.9e-69 266.2 185 71.4
CSS0031400 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 1.6e-68 263.1 188 70.7
Lj5A86T66 Lonicera japonica HOM05D005248 ORTHO05D006409 2.8e-68 262.3 190 70.0
Actinidia25510 Actinidia chinensis HOM05D005248 ORTHO05D006409 1.1e-67 260.4 188 69.1
COL.COLO4_37271 Corchorus olitorius HOM05D005248 ORTHO05D006409 1.1e-67 260.4 186 71.5
Thecc.03G142000 Theobroma cacao HOM05D005248 ORTHO05D006409 9.9e-66 253.8 186 70.4
SGA_v2.0_scaffold44G16640 Striga asiatica HOM05D005248 ORTHO05D006409 2.2e-65 252.7 182 68.7
CSS0027803 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 2.9e-65 252.3 185 69.7
Rhsim08G0198900 Rhododendron simsii HOM05D005248 ORTHO05D006409 3.8e-65 251.9 188 68.1
DCAR_025638 Daucus carota HOM05D005248 ORTHO05D006409 6.4e-65 251.1 193 64.2
HanXRQChr02g0034361 Helianthus annuus HOM05D005248 ORTHO05D006409 1.1e-64 250.4 191 64.9
Duzib205G1954 Durio zibethinus HOM05D005248 ORTHO05D006409 4.2e-64 248.4 186 67.7
PSO063G1686 Papaver somniferum HOM05D005248 ORTHO05D006409 1.6e-63 246.5 196 64.3
ECA247G0315 Erigeron canadensis HOM05D005248 ORTHO05D000263 2.1e-63 246.1 173 67.6
Potri.015G108300 Populus trichocarpa HOM05D005248 ORTHO05D006409 4.6e-63 245.0 188 65.4
QL10p000295 Quercus lobata HOM05D005248 ORTHO05D006409 4.6e-63 245.0 184 66.3
TAR371G0926 Trochodendron aralioides HOM05D005248 ORTHO05D006409 4.6e-63 245.0 187 64.2
Gohir.A07G046300 Gossypium hirsutum HOM05D005248 ORTHO05D006409 6.0e-63 244.6 186 67.2
Gohir.D07G050600 Gossypium hirsutum HOM05D005248 ORTHO05D006409 7.9e-63 244.2 186 66.7
Lsat_1_v5_gn_1_30140 Lactuca sativa HOM05D005248 ORTHO05D006409 7.9e-63 244.2 189 63.5
GSVIVG01005682001 Vitis vinifera HOM05D005248 ORTHO05D006409 1.0e-62 243.8 185 68.6
Cfa018696 Carpinus fangiana HOM05D005248 ORTHO05D006409 1.8e-62 243.0 185 66.5
PSO782G4423 Papaver somniferum HOM05D005248 ORTHO05D006409 1.8e-62 243.0 196 63.3
Nitab4.5_0012624g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 2.3e-62 242.7 150 78.0
Gorai.001G053700 Gossypium raimondii HOM05D005248 ORTHO05D006409 3.0e-62 242.3 186 66.7
TWI39G0330 Tripterygium wilfordii HOM05D005248 ORTHO05D006409 8.7e-62 240.7 187 65.2
RcHm_v2.0_Chr7g0188501 Rosa chinensis HOM05D005248 ORTHO05D006409 1.1e-61 240.4 185 68.1
Manes.14G043700 Manihot esculenta HOM05D005248 ORTHO05D006409 1.5e-61 240.0 190 64.7
Migut.I00662 Erythranthe guttata HOM05D005248 ORTHO05D006409 1.9e-61 239.6 185 65.9
Cpa.g.sc13.186 Carica papaya HOM05D005248 ORTHO05D006409 2.5e-61 239.2 190 63.2
THA.LOC104825042 Tarenaya hassleriana HOM05D005248 ORTHO05D006409 4.3e-61 238.4 186 65.1
Prupe.5G140100 Prunus persica HOM05D005248 ORTHO05D006409 7.4e-61 237.7 185 67.0
Atru.chr6.1938 Acer truncatum HOM05D005248 ORTHO05D006409 1.3e-60 236.9 225 59.1
Ciclev10032866m.g Citrus clementina HOM05D005248 ORTHO05D006409 1.3e-60 236.9 190 65.8
arahy.Tifrunner.gnm1.ann1.1UQX8S Arachis hypogaea HOM05D005248 ORTHO05D006409 1.6e-60 236.5 185 64.9
Phvul.009G158800 Phaseolus vulgaris HOM05D005248 ORTHO05D006409 1.6e-60 236.5 187 62.0
Sed0027310 Sechium edule HOM05D005248 ORTHO05D006409 1.6e-60 236.5 193 62.7
CANSAT78G1265 Cannabis sativa HOM05D005248 ORTHO05D006409 2.1e-60 236.1 198 61.6
Sabra12G0080100 Salix brachista HOM05D005248 ORTHO05D006409 2.8e-60 235.7 188 66.0
FAN08G1048 Fragaria x ananassa HOM05D005248 ORTHO05D006409 3.7e-60 235.3 185 66.5
vmacro19110 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 3.7e-60 235.3 189 63.0
FAN13G2612 Fragaria x ananassa HOM05D005248 ORTHO05D006409 6.2e-60 234.6 187 66.8
Aqoxy5G00839 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 1.1e-59 233.8 186 64.0
arahy.Tifrunner.gnm1.ann1.4X1L65 Arachis hypogaea HOM05D005248 ORTHO05D006409 1.4e-59 233.4 185 64.3
FvH4_5g09730 Fragaria vesca HOM05D005248 ORTHO05D006409 1.8e-59 233.0 185 65.9
MD14G1145800 Malus domestica HOM05D005248 ORTHO05D006409 1.8e-59 233.0 185 64.9
FAN18G0065 Fragaria x ananassa HOM05D005248 ORTHO05D006409 4.0e-59 231.9 185 65.9
arahy.Tifrunner.gnm1.ann1.JK6BKQ Arachis hypogaea HOM05D005248 ORTHO05D006409 5.3e-59 231.5 186 64.0
Glyma.04G202600 Glycine max HOM05D005248 ORTHO05D006409 5.3e-59 231.5 186 60.8
FAN04G2277 Fragaria x ananassa HOM05D005248 ORTHO05D006409 1.2e-58 230.3 187 65.8
Medtr3g098480 Medicago truncatula HOM05D005248 ORTHO05D006409 1.2e-58 230.3 188 61.2
EL10Ac5g11271 Beta vulgaris HOM05D005248 ORTHO05D006409 1.5e-58 229.9 190 61.6
Thhalv10014773m.g Eutrema salsugineum HOM05D005248 ORTHO05D006409 1.5e-58 229.9 186 62.9
Aqoxy4G00470 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 2.0e-58 229.6 194 62.4
AT5G51040 Arabidopsis thaliana HOM05D005248 ORTHO05D006409 2.0e-58 229.6 187 61.5
AL8G25260 Arabidopsis lyrata HOM05D005248 ORTHO05D006409 2.6e-58 229.2 185 62.2
arahy.Tifrunner.gnm1.ann1.X29WZH Arachis hypogaea HOM05D005248 ORTHO05D006409 3.4e-58 228.8 186 62.9
Lj1g0011989 Lotus japonicus HOM05D005248 ORTHO05D006409 4.5e-58 228.4 186 61.3
CARHR257090 Cardamine hirsuta HOM05D005248 ORTHO05D006409 7.6e-58 227.6 186 61.3
Glyma.06G162900 Glycine max HOM05D005248 ORTHO05D006409 1.0e-57 227.3 186 62.4
Eucgr.H01475 Eucalyptus grandis HOM05D005248 ORTHO05D006409 1.3e-57 226.9 194 61.3
CSS0028005 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 1.7e-57 226.5 161 70.8
ClCG11G000550 Citrullus lanatus HOM05D005248 ORTHO05D006409 1.7e-57 226.5 158 69.0
Nn3g16250 Nelumbo nucifera HOM05D005248 ORTHO05D006409 1.7e-57 226.5 185 62.7
BraSC35t45996Z Brassica rapa HOM05D005248 ORTHO05D006409 2.2e-57 226.1 190 60.5
VMungo0251G2692 Vigna mungo HOM05D005248 ORTHO05D006409 2.9e-57 225.7 130 78.5
A10p08030 Brassica napus HOM05D005248 ORTHO05D006409 3.8e-57 225.3 186 60.2
CsaV3_2G009360 Cucumis sativus L. HOM05D005248 ORTHO05D006409 3.8e-57 225.3 180 61.1
MELO3C008773.2 Cucumis melo HOM05D005248 ORTHO05D006409 6.5e-57 224.6 183 61.7
MD06G1128800 Malus domestica HOM05D005248 ORTHO05D006409 6.5e-57 224.6 185 63.2
PGR119G0545 Punica granatum HOM05D005248 ORTHO05D006409 1.4e-56 223.4 192 60.4
Sp6g13210 Schrenkiella parvula HOM05D005248 ORTHO05D006409 1.9e-56 223.0 185 58.9
unitig_61.g26221 Utricularia gibba HOM05D005248 ORTHO05D006409 1.9e-56 223.0 185 60.5
Hund10025 Selenicereus undatus HOM05D005248 ORTHO05D006409 2.5e-56 222.6 193 59.6
BcaB05g24022 Brassica carinata HOM05D005248 ORTHO05D006409 3.2e-56 222.2 185 60.0
vmacro16762 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 3.2e-56 222.2 157 70.7
Carub.0008s1104 Capsella rubella HOM05D005248 ORTHO05D006409 4.2e-56 221.9 185 60.0
Sc14g0003150 Simmondsia chinensis HOM05D005248 ORTHO05D006409 4.2e-56 221.9 184 60.3
AUR62043379 Chenopodium quinoa HOM05D005248 ORTHO05D006409 5.5e-56 221.5 190 60.5
Medtr8g096070 Medicago truncatula HOM05D005248 ORTHO05D006409 5.5e-56 221.5 185 60.5
Psat7g039840 Pisum sativum HOM05D005248 ORTHO05D006409 5.5e-56 221.5 175 62.9
Atru.chr10.902 Acer truncatum HOM05D005248 ORTHO05D006409 1.2e-55 220.3 162 67.3
AUR62043864 Chenopodium quinoa HOM05D005248 ORTHO05D006409 1.2e-55 220.3 190 60.0
BcaC03g14629 Brassica carinata HOM05D005248 ORTHO05D006409 1.6e-55 219.9 185 60.0
Hund02516 Selenicereus undatus HOM05D005248 ORTHO05D006409 1.6e-55 219.9 186 60.2
AUR62032207 Chenopodium quinoa HOM05D005248 ORTHO05D006409 3.5e-55 218.8 190 60.5
vmacro19116 Vaccinium macrocarpon HOM05D000402 ORTHO05D000263 4.6e-55 218.4 199 57.8
CDE06G0011 Ceratophyllum demersum HOM05D005248 ORTHO05D006409 2.3e-54 216.1 187 61.5
BolC9t56844H Brassica oleracea HOM05D005248 ORTHO05D006409 3.0e-54 215.7 187 58.3
Haze_07087 Corylus avellana HOM05D005248 ORTHO05D006409 3.0e-54 215.7 226 53.5
Lj9C488G13 Lonicera japonica HOM05D005248 ORTHO05D006409 1.1e-53 213.8 189 59.8
Lalb_Chr12g0202581 Lupinus albus HOM05D005248 ORTHO05D006409 1.1e-53 213.8 188 58.5
A02p12520 Brassica napus HOM05D005248 ORTHO05D006409 1.9e-53 213.0 184 58.7
Zm00001eb198100 Zea mays HOM05D005248 ORTHO05D006409 2.5e-53 212.6 139 67.6
Sabra15G0130900 Salix brachista HOM05D001551 ORTHO05D000263 5.7e-53 211.5 251 47.8
Aa31LG3G7530 Aethionema arabicum HOM05D005248 ORTHO05D006409 7.4e-53 211.1 202 55.9
BolC2t08204H Brassica oleracea HOM05D005248 ORTHO05D006409 6.3e-52 208.0 194 57.2
Ah.11g047000 Amaranthus hybridus HOM05D005248 ORTHO05D006409 8.2e-52 207.6 190 55.8
ATR0582G036 Amborella trichopoda HOM05D005248 ORTHO05D006409 1.1e-51 207.2 185 60.0
BraA02t06314Z Brassica rapa HOM05D005248 ORTHO05D006409 1.1e-51 207.2 191 57.1
Glyma.08G007100 Glycine max HOM05D005248 ORTHO05D006409 1.8e-51 206.5 176 58.0
C09p39650 Brassica napus HOM05D005248 ORTHO05D006409 3.1e-51 205.7 186 56.5
Ca_16820_v3 Cicer arietinum L. HOM05D000402 ORTHO05D000263 6.9e-51 204.5 129 71.3
Os11g0528300 Oryza sativa ssp. japonica HOM05D005248 ORTHO05D006409 2.0e-50 203.0 129 72.1
HPP92_006440 Vanilla planifolia HOM05D005248 ORTHO05D006409 2.0e-50 203.0 186 57.5
Sabra15G0128600 Salix brachista HOM05D005248 ORTHO05D006409 2.6e-50 202.6 275 44.0
CiPaw.12G000300 Carya illinoinensis HOM05D005248 ORTHO05D006409 1.7e-49 199.9 167 62.9
C02p20620 Brassica napus HOM05D005248 ORTHO05D006409 1.9e-48 196.4 117 72.6
PSO541G2841 Papaver somniferum HOM05D005248 ORTHO05D006409 5.5e-48 194.9 128 72.7
Lsat_1_v5_gn_9_37901 Lactuca sativa HOM05D005248 ORTHO05D006409 3.9e-46 188.7 145 62.8
Nitab4.5_0002540g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 3.7e-44 182.2 130 74.6
SMO146G0118 Selaginella moellendorffii HOM05D005248 ORTHO05D006409 1.0e-38 164.1 123 58.5
Gohir.A07G044532 Gossypium hirsutum HOM05D005248 ORTHO05D006409 8.8e-38 161.0 87 79.3
Mapoly0022s0036 Marchantia polymorpha HOM05D005248 ORTHO05D006409 1.5e-37 160.2 124 59.7
Pp3c16_25170 Physcomitrium patens HOM05D005248 ORTHO05D006409 4.4e-37 158.7 184 45.1
Rhsim12G0181600 Rhododendron simsii HOM05D005248 ORTHO05D006409 1.2e-34 150.6 106 68.9
Lj4g0025558 Lotus japonicus HOM05D005248 ORTHO05D006409 2.7e-31 139.4 151 53.6
Gohir.A11G038833 Gossypium hirsutum HOM05D005248 ORTHO05D006409 3.0e-30 136.0 86 68.6
PSO675G1946 Papaver somniferum HOM05D005248 ORTHO05D006409 3.0e-30 136.0 120 60.0
Zm00001eb113310 Zea mays HOM05D005248 ORTHO05D006409 8.8e-30 134.4 79 72.2
Cre12.g550750 Chlamydomonas reinhardtii HOM05D005248 ORTHO05D006409 2.2e-28 129.8 129 48.1
BcaC04g20744 Brassica carinata HOM05D005248 ORTHO05D006409 1.8e-27 126.7 72 72.2
TPR.G12753 Trifolium pratense HOM05D005248 ORTHO05D006409 5.3e-27 125.2 72 73.6
QL10p017282 Quercus lobata HOM05D005248 ORTHO05D006409 9.4e-24 114.4 65 70.8
CAN.G412.4 Capsicum annuum HOM05D005248 ORTHO05D006409 4.7e-23 112.1 60 85.0
PRCOL_00003706 Prasinoderma coloniale HOM05D005248 ORTHO05D006409 8.8e-22 107.8 136 39.0
TPR.G20580 Trifolium pratense HOM05D005248 ORTHO05D006409 1.3e-20 104.0 111 54.1
MCO01G238 Micromonas commoda HOM05D005248 ORTHO05D006409 6.3e-20 101.7 102 44.1
Gorai.007G045300 Gossypium raimondii HOM05D005248 ORTHO05D006409 1.4e-11 73.9 99 52.5
TPR.G21935 Trifolium pratense HOM05D005248 ORTHO05D006409 3.8e-09 65.9 35 77.1
AagrBONN_evm.TU.Sc2ySwM_368.2623 Anthoceros agrestis HOM05D005248 ORTHO05D006409 4.2e-08 62.4 57 47.4


User provided reference genes

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