Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1008.12 Capsicum annuum HOM05D006171 ORTHO05D007294 2.3e-179 632.1 311 100.0
Nitab4.5_0002700g0080 Nicotiana tabacum HOM05D006171 ORTHO05D007294 9.5e-162 573.5 311 92.3
Sopen03g036650 Solanum pennellii HOM05D006171 ORTHO05D007294 2.0e-159 565.8 302 92.1
Solyc03g117740.3 Solanum lycopersicum HOM05D006171 ORTHO05D007294 2.6e-159 565.5 302 92.1
Peaxi162Scf00314g01040 Petunia axillaris HOM05D006171 ORTHO05D007294 1.2e-156 556.6 311 88.7
Nitab4.5_0004738g0050 Nicotiana tabacum HOM05D006171 ORTHO05D007294 1.0e-155 553.5 311 91.0
PGSC0003DMG400014158 Solanum tuberosum HOM05D006171 ORTHO05D007294 1.3e-155 553.1 301 91.0
SalBow1G2136 Salvia bowleyana HOM05D006171 ORTHO05D007294 1.2e-145 520.0 311 82.0
MSTRG.9390 Avicennia marina HOM05D006171 ORTHO05D007294 4.4e-143 511.5 306 82.7
PGR102G1595 Punica granatum HOM05D006171 ORTHO05D007294 1.5e-138 496.5 268 88.1
Potri.003G185501 Populus trichocarpa HOM05D006171 ORTHO05D007294 4.3e-138 495.0 304 78.9
Migut.D01148 Erythranthe guttata HOM05D006171 ORTHO05D007294 5.6e-138 494.6 307 80.1
Prupe.3G104600 Prunus persica HOM05D006171 ORTHO05D007294 5.6e-138 494.6 305 79.7
Potri.003G185754 Populus trichocarpa HOM05D006171 ORTHO05D007294 7.3e-138 494.2 304 78.9
TAR626G1848 Trochodendron aralioides HOM05D006171 ORTHO05D007294 3.6e-137 491.9 299 80.3
Rhsim12G0183500 Rhododendron simsii HOM05D006171 ORTHO05D007294 4.8e-137 491.5 306 78.4
Lj5C82T4 Lonicera japonica HOM05D006171 ORTHO05D007294 1.1e-136 490.3 270 87.0
CSS0034221 Camellia sinensis var. sinensis HOM05D006171 ORTHO05D007294 4.0e-136 488.4 309 79.0
SGA_v2.0_scaffold74G24604 Striga asiatica HOM05D006171 ORTHO05D007294 4.0e-136 488.4 309 78.3
Thecc.06G048100 Theobroma cacao HOM05D006171 ORTHO05D007294 4.0e-136 488.4 300 80.0
Potri.003G185901 Populus trichocarpa HOM05D006171 ORTHO05D007294 5.3e-136 488.0 263 87.8
RcHm_v2.0_Chr2g0132161 Rosa chinensis HOM05D006171 ORTHO05D007294 5.3e-136 488.0 302 79.1
Potri.001G040100 Populus trichocarpa HOM05D006171 ORTHO05D007294 3.4e-135 485.3 303 77.9
Manes.11G069800 Manihot esculenta HOM05D006171 ORTHO05D007294 4.5e-135 485.0 312 77.6
A09p61030 Brassica napus HOM05D000031 ORTHO05D007294 9.9e-135 483.8 271 84.9
BraA09t41476Z Brassica rapa HOM05D000031 ORTHO05D007294 9.9e-135 483.8 271 84.9
TWI12G1342 Tripterygium wilfordii HOM05D006171 ORTHO05D007294 9.9e-135 483.8 311 76.8
FvH4_6g28180 Fragaria vesca HOM05D006171 ORTHO05D007294 1.7e-134 483.0 295 80.7
FAN14G3270 Fragaria x ananassa HOM05D006171 ORTHO05D007294 2.2e-134 482.6 295 80.7
Sabra03G0135700 Salix brachista HOM05D006171 ORTHO05D007294 2.2e-134 482.6 311 76.5
unitig_62.g23820 Utricularia gibba HOM05D006171 ORTHO05D007294 2.2e-134 482.6 299 78.9
Duzib235G0222 Durio zibethinus HOM05D006171 ORTHO05D007294 4.9e-134 481.5 306 79.1
Cfa001846 Carpinus fangiana HOM05D006171 ORTHO05D007294 6.4e-134 481.1 300 78.3
Eucgr.F03988 Eucalyptus grandis HOM05D006171 ORTHO05D007294 6.4e-134 481.1 273 83.9
Lsat_1_v5_gn_4_84921 Lactuca sativa HOM05D006171 ORTHO05D007294 8.4e-134 480.7 311 76.2
FAN09G0753 Fragaria x ananassa HOM05D006171 ORTHO05D007294 1.1e-133 480.3 298 79.5
THA.LOC104812426 Tarenaya hassleriana HOM05D006171 ORTHO05D007294 1.1e-133 480.3 273 83.2
MD09G1228700 Malus domestica HOM05D006171 ORTHO05D007294 1.9e-133 479.6 305 78.4
CiPaw.01G256900 Carya illinoinensis HOM05D006171 ORTHO05D007294 3.2e-133 478.8 301 79.7
Gohir.D05G117900 Gossypium hirsutum HOM05D006171 ORTHO05D007294 3.2e-133 478.8 306 76.8
Nn2g12468 Nelumbo nucifera HOM05D006171 ORTHO05D007294 3.2e-133 478.8 301 78.4
Ah.09g231760 Amaranthus hybridus HOM05D006171 ORTHO05D007294 7.1e-133 477.6 279 83.2
Atru.chr1.2816 Acer truncatum HOM05D006171 ORTHO05D007294 4.6e-132 474.9 299 78.9
Sp1g14390 Schrenkiella parvula HOM05D006171 ORTHO05D007294 4.6e-132 474.9 269 83.6
AT1G16080 Arabidopsis thaliana HOM05D006171 ORTHO05D007294 7.9e-132 474.2 279 80.3
Carub.0001s1588 Capsella rubella HOM05D006171 ORTHO05D007294 7.9e-132 474.2 278 81.3
AL1G28240 Arabidopsis lyrata HOM05D006171 ORTHO05D007294 1.3e-131 473.4 311 75.6
C08p44630 Brassica napus HOM05D000031 ORTHO05D007294 1.3e-131 473.4 271 83.0
BolC8t52009H Brassica oleracea HOM05D000031 ORTHO05D007294 1.3e-131 473.4 271 83.0
A06p12100 Brassica napus HOM05D006171 ORTHO05D007294 3.0e-131 472.2 307 76.2
Thhalv10008259m.g Eutrema salsugineum HOM05D006171 ORTHO05D007294 3.0e-131 472.2 310 74.8
vmacro16838 Vaccinium macrocarpon HOM05D006171 ORTHO05D007294 3.9e-131 471.9 308 75.6
Actinidia36860 Actinidia chinensis HOM05D006171 ORTHO05D007294 5.1e-131 471.5 264 84.5
BcaB02g06590 Brassica carinata HOM05D006171 ORTHO05D007294 6.7e-131 471.1 307 76.2
BraA06t24379Z Brassica rapa HOM05D006171 ORTHO05D007294 6.7e-131 471.1 307 76.2
HanXRQChr16g0499501 Helianthus annuus HOM05D006171 ORTHO05D007294 1.5e-130 469.9 312 75.0
COL.COLO4_26789 Corchorus olitorius HOM05D006171 ORTHO05D007294 1.9e-130 469.5 253 88.5
Cpa.g.sc95.67 Carica papaya HOM05D006171 ORTHO05D007294 2.5e-130 469.2 291 79.0
BolC5t30159H Brassica oleracea HOM05D006171 ORTHO05D007294 3.3e-130 468.8 307 75.6
MELO3C023482.2 Cucumis melo HOM05D006171 ORTHO05D007294 3.3e-130 468.8 294 77.6
ECA232G3902 Erigeron canadensis HOM05D006171 ORTHO05D007294 3.3e-130 468.8 264 84.8
BcaC05g25605 Brassica carinata HOM05D006171 ORTHO05D007294 4.3e-130 468.4 307 75.6
Sc10g0006500 Simmondsia chinensis HOM05D006171 ORTHO05D007294 4.3e-130 468.4 281 81.5
CsaV3_7G031750 Cucumis sativus L. HOM05D006171 ORTHO05D007294 5.6e-130 468.0 294 77.6
Aqoxy7G02339 Aquilegia oxysepala HOM05D006171 ORTHO05D007294 9.6e-130 467.2 266 83.1
BcaB03g14506 Brassica carinata HOM05D000031 ORTHO05D007294 9.6e-130 467.2 309 75.1
AUR62002650 Chenopodium quinoa HOM05D006171 ORTHO05D007294 3.7e-129 465.3 265 83.0
Oeu003115.1 Olea europaea HOM05D006171 ORTHO05D007294 8.1e-129 464.2 242 90.5
Oeu003116.1 Olea europaea HOM05D006171 ORTHO05D007294 8.1e-129 464.2 242 90.5
C05p14280 Brassica napus HOM05D006171 ORTHO05D007294 1.4e-128 463.4 307 75.2
ClCG09G003450 Citrullus lanatus HOM05D006171 ORTHO05D007294 1.8e-128 463.0 282 79.1
Hund22405 Selenicereus undatus HOM05D006171 ORTHO05D007294 1.8e-128 463.0 262 85.1
Potri.001G041140 Populus trichocarpa HOM05D006171 ORTHO05D007294 1.5e-127 459.9 303 75.2
Ciclev10025944m.g Citrus clementina HOM05D006171 ORTHO05D007294 2.2e-126 456.1 297 76.8
Cc04_g05360 Coffea canephora HOM05D006171 ORTHO05D007294 8.4e-126 454.1 242 89.3
VMungo1309G0227 Vigna mungo HOM05D006171 ORTHO05D007294 1.9e-125 453.0 273 78.0
CDE07G0158 Ceratophyllum demersum HOM05D006171 ORTHO05D007294 7.1e-125 451.1 272 78.7
Lj3g0005429 Lotus japonicus HOM05D006171 ORTHO05D007294 1.6e-124 449.9 293 74.4
Aa31LG7G650 Aethionema arabicum HOM05D006171 ORTHO05D007294 3.5e-124 448.7 282 77.0
arahy.Tifrunner.gnm1.ann1.B85C5A Arachis hypogaea HOM05D006171 ORTHO05D007294 3.5e-124 448.7 305 72.5
CSS0033272 Camellia sinensis var. sinensis HOM05D006171 ORTHO05D007294 3.5e-124 448.7 309 74.1
arahy.Tifrunner.gnm1.ann1.F1WQ27 Arachis hypogaea HOM05D006171 ORTHO05D007294 4.6e-124 448.4 305 72.5
GSVIVG01016093001 Vitis vinifera HOM05D006171 ORTHO05D007294 6.0e-124 448.0 242 86.8
AUR62034059 Chenopodium quinoa HOM05D006171 ORTHO05D007294 5.1e-123 444.9 309 71.5
Glyma.08G220900 Glycine max HOM05D006171 ORTHO05D007294 6.7e-123 444.5 276 76.8
Glyma.07G020900 Glycine max HOM05D006171 ORTHO05D007294 8.7e-123 444.1 276 77.2
Psat7g260440 Pisum sativum HOM05D006171 ORTHO05D007294 8.7e-123 444.1 276 76.8
Phvul.009G155700 Phaseolus vulgaris HOM05D006171 ORTHO05D007294 1.9e-122 443.0 271 76.4
VMungo0647G1588 Vigna mungo HOM05D006171 ORTHO05D007294 1.6e-121 439.9 279 75.6
Medtr4g007910 Medicago truncatula HOM05D006171 ORTHO05D007294 3.7e-121 438.7 266 78.2
HPP92_021945 Vanilla planifolia HOM05D006171 ORTHO05D007294 3.7e-121 438.7 263 77.9
Phvul.008G253700 Phaseolus vulgaris HOM05D006171 ORTHO05D007294 5.3e-120 434.9 262 77.5
Lalb_Chr25g0278721 Lupinus albus HOM05D006171 ORTHO05D007294 9.0e-120 434.1 282 74.5
Zm00001eb177930 Zea mays HOM05D006171 ORTHO05D007294 7.6e-119 431.0 271 77.1
MBI14_g16440_MAGBIO Magnolia biondii HOM05D006171 ORTHO05D007294 5.5e-117 424.9 251 80.5
EL10Ac8g19420 Beta vulgaris HOM05D006171 ORTHO05D007294 2.8e-113 412.5 323 66.6
Gorai.009G121800 Gossypium raimondii HOM05D006171 ORTHO05D007294 1.6e-108 396.7 219 87.2
Pp3c1_40240 Physcomitrium patens HOM05D006171 ORTHO05D007294 1.6e-108 396.7 270 69.3
SMO356G0223 Selaginella moellendorffii HOM05D006171 ORTHO05D007294 3.4e-103 379.0 258 69.8
CBR_g3722 Chara braunii HOM05D006171 ORTHO05D007294 1.1e-101 374.0 287 64.1
Dinv21434 Davidia involucrata HOM05D006171 ORTHO05D007294 1.1e-101 374.0 247 77.3
FAN05G3051 Fragaria x ananassa HOM05D006171 ORTHO05D007294 1.1e-101 374.0 271 72.3
Mapoly0047s0137 Marchantia polymorpha HOM05D006171 ORTHO05D007294 2.7e-100 369.4 258 66.3
CBR_g39222 Chara braunii HOM05D006171 ORTHO05D007294 1.0e-99 367.5 292 62.3
Os08g0266300 Oryza sativa ssp. japonica HOM05D006171 ORTHO05D007294 2.2e-97 359.8 241 75.9
CANSAT64G1829 Cannabis sativa HOM05D006171 ORTHO05D007294 1.8e-96 356.7 191 89.0
HanXRQChr16g0499491 Helianthus annuus HOM05D006171 ORTHO05D007294 1.2e-95 354.0 308 58.8
MD17G1227100 Malus domestica HOM05D006171 ORTHO05D007294 2.0e-95 353.2 189 89.4
PSO017G5952 Papaver somniferum HOM05D006171 ORTHO05D007294 3.2e-93 345.9 191 84.8
ATR0580G215 Amborella trichopoda HOM05D006171 ORTHO05D007294 1.2e-92 344.0 189 86.8
PSO170G6342 Papaver somniferum HOM05D006171 ORTHO05D007294 1.6e-92 343.6 191 84.3
MCO15G666 Micromonas commoda HOM05D006171 ORTHO05D007294 9.1e-88 327.8 259 62.5
Cre10.g435850 Chlamydomonas reinhardtii HOM05D006171 ORTHO05D007294 7.7e-87 324.7 264 61.7
Gohir.A05G117000 Gossypium hirsutum HOM05D006171 ORTHO05D007294 1.0e-86 324.3 173 87.9
AagrBONN_evm.TU.Sc2ySwM_344.694 Anthoceros agrestis HOM05D006171 ORTHO05D007294 1.6e-84 317.0 254 63.4
PRCOL_00006061 Prasinoderma coloniale HOM05D006171 ORTHO05D007294 2.0e-82 310.1 243 61.3
QL05p037111 Quercus lobata HOM05D006171 ORTHO05D007294 7.5e-82 308.1 187 79.7
Hma1.2p1_2173F.1_g316040 Hydrangea macrophylla HOM05D006171 ORTHO05D007294 5.9e-79 298.5 211 73.0
Aqoxy6G02563 Aquilegia oxysepala HOM05D006171 ORTHO05D007294 2.8e-68 263.1 268 53.0
Rhsim12G0183600 Rhododendron simsii HOM05D006171 ORTHO05D007294 2.7e-63 246.5 255 55.3
RcHm_v2.0_Chr2g0132191 Rosa chinensis HOM05D006171 ORTHO05D007294 8.6e-62 241.5 189 65.1
Sed0008158 Sechium edule HOM05D006171 ORTHO05D007294 3.6e-60 236.1 175 67.4
CDE04G3654 Ceratophyllum demersum HOM05D006171 ORTHO05D007294 1.9e-40 170.6 131 64.9
QL05p037113 Quercus lobata HOM05D006171 ORTHO05D007294 9.6e-37 158.3 85 87.1
AagrBONN_evm.TU.Sc2ySwM_344.1199 Anthoceros agrestis HOM05D006171 ORTHO05D007294 2.4e-35 153.7 273 37.4
Cre03.g167050 Chlamydomonas reinhardtii HOM05D006171 ORTHO05D007294 6.0e-23 112.5 315 28.6
PRCOL_00003410 Prasinoderma coloniale HOM05D006171 ORTHO05D007294 8.7e-22 108.6 276 33.7
SEGI_00638 Sequoiadendron giganteum HOM05D006171 ORTHO05D007294 8.7e-22 108.6 65 78.5
RcHm_v2.0_Chr2g0132221 Rosa chinensis HOM05D006171 ORTHO05D007294 4.3e-21 106.3 65 69.2
arahy.Tifrunner.gnm1.ann1.VYJR5C Arachis hypogaea HOM05D006171 ORTHO05D007294 3.5e-15 86.7 104 53.8
Nn5g31109 Nelumbo nucifera HOM05D006171 ORTHO05D007294 3.5e-15 86.7 73 64.4


User provided reference genes

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