Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1005.1 Capsicum annuum HOM05D003900 ORTHO05D005009 4.0e-72 274.6 137 100.0
CAN.G853.45 Capsicum annuum HOM05D003900 ORTHO05D005009 2.7e-52 208.8 114 93.0
CAN.G78.130 Capsicum annuum HOM05D003900 ORTHO05D005009 7.9e-52 207.2 114 90.4
CAN.G430.2 Capsicum annuum HOM05D003900 ORTHO05D005009 1.8e-51 206.1 137 79.6
Solyc01g095110.4 Solanum lycopersicum HOM05D003900 ORTHO05D005009 2.8e-41 172.2 112 77.7
PGSC0003DMG400000195 Solanum tuberosum HOM05D003900 ORTHO05D005009 8.2e-41 170.6 112 76.8
Sopen01g038900 Solanum pennellii HOM05D003900 ORTHO05D005009 4.1e-40 168.3 112 76.8
Nitab4.5_0000915g0110 Nicotiana tabacum HOM05D003900 ORTHO05D005009 1.2e-36 156.8 106 74.5
Peaxi162Scf00020g00155 Petunia axillaris HOM05D003900 ORTHO05D005009 4.7e-36 154.8 112 68.8
Nitab4.5_0010695g0010 Nicotiana tabacum HOM05D003900 ORTHO05D005009 1.4e-35 153.3 106 71.7
CAN.G609.3 Capsicum annuum HOM05D003900 ORTHO05D005009 1.7e-30 136.3 81 85.2
Cc02_g38560 Coffea canephora HOM05D003900 ORTHO05D005009 5.3e-24 114.8 109 54.1
Atru.chr5.563 Acer truncatum HOM05D003900 ORTHO05D005009 3.5e-23 112.1 110 52.7
CSS0000093 Camellia sinensis var. sinensis HOM05D003900 ORTHO05D005009 5.9e-23 111.3 110 50.9
CSS0016355 Camellia sinensis var. sinensis HOM05D003900 ORTHO05D005009 5.9e-23 111.3 110 50.9
Atru.chr5.581 Acer truncatum HOM05D003900 ORTHO05D005009 1.7e-22 109.8 110 51.8
Dinv43863 Davidia involucrata HOM05D003900 ORTHO05D005009 2.9e-22 109.0 109 52.3
Rhsim07G0010500 Rhododendron simsii HOM05D003900 ORTHO05D005009 1.5e-21 106.7 105 49.5
CAN.G460.4 Capsicum annuum HOM05D003900 ORTHO05D005009 3.6e-20 102.1 52 92.3
Manes.01G252300 Manihot esculenta HOM05D003900 ORTHO05D005009 4.7e-20 101.7 107 49.5
QL04p055515 Quercus lobata HOM05D003900 ORTHO05D005009 1.0e-19 100.5 107 50.5
THA.LOC104817316 Tarenaya hassleriana HOM05D003900 ORTHO05D005009 1.0e-19 100.5 107 48.6
vmacro13229 Vaccinium macrocarpon HOM05D003900 ORTHO05D005009 1.8e-19 99.8 108 49.1
CAN.G874.71 Capsicum annuum HOM05D003900 ORTHO05D005009 3.0e-19 99.0 52 92.3
Thhalv10001319m.g Eutrema salsugineum HOM05D003900 ORTHO05D005009 4.0e-19 98.6 106 49.1
Gorai.008G119500 Gossypium raimondii HOM05D003900 ORTHO05D005009 5.2e-19 98.2 109 46.8
Gohir.D12G110200 Gossypium hirsutum HOM05D003900 ORTHO05D005009 8.8e-19 97.4 109 46.8
CiPaw.01G067500 Carya illinoinensis HOM05D003900 ORTHO05D005009 2.6e-18 95.9 108 47.2
Gohir.A12G106900 Gossypium hirsutum HOM05D003900 ORTHO05D005009 3.4e-18 95.5 112 45.5
Thecc.01G352500 Theobroma cacao HOM05D003900 ORTHO05D005009 5.7e-18 94.7 113 45.1
Ciclev10019067m.g Citrus clementina HOM05D003900 ORTHO05D005009 9.7e-18 94.0 110 47.3
GSVIVG01026966001 Vitis vinifera HOM05D003900 ORTHO05D005009 1.3e-17 93.6 102 48.0
Haze_15564 Corylus avellana HOM05D003900 ORTHO05D005009 1.7e-17 93.2 107 46.7
Sp4g28170 Schrenkiella parvula HOM05D003900 ORTHO05D005009 1.7e-17 93.2 106 45.3
Lj7C507T1 Lonicera japonica HOM05D003900 ORTHO05D005009 2.8e-17 92.4 105 45.7
Migut.B01798 Erythranthe guttata HOM05D003900 ORTHO05D005009 3.7e-17 92.0 106 46.2
SalBow3G3666 Salvia bowleyana HOM05D003900 ORTHO05D005009 3.7e-17 92.0 106 45.3
CiPaw.01G067200 Carya illinoinensis HOM05D003900 ORTHO05D005009 4.8e-17 91.7 107 45.8
Aa31LG1G27520 Aethionema arabicum HOM05D003900 ORTHO05D005009 6.3e-17 91.3 106 46.2
CiPaw.01G066600 Carya illinoinensis HOM05D003900 ORTHO05D005009 6.3e-17 91.3 108 46.3
CiPaw.01G066800 Carya illinoinensis HOM05D003900 ORTHO05D005009 6.3e-17 91.3 108 45.4
CARHR141390 Cardamine hirsuta HOM05D003900 ORTHO05D005009 1.4e-16 90.1 106 43.4
CANSAT56G3111 Cannabis sativa HOM05D003900 ORTHO05D005009 2.4e-16 89.4 105 46.7
COL.COLO4_12777 Corchorus olitorius HOM05D003900 ORTHO05D005009 2.4e-16 89.4 113 45.1
CiPaw.01G067400 Carya illinoinensis HOM05D003900 ORTHO05D005009 3.1e-16 89.0 107 46.7
Duzib133G1046 Durio zibethinus HOM05D003900 ORTHO05D005009 3.1e-16 89.0 111 43.2
CiPaw.01G067300 Carya illinoinensis HOM05D003900 ORTHO05D005009 5.3e-16 88.2 103 46.6
CARHR171850 Cardamine hirsuta HOM05D003900 ORTHO05D005009 7.0e-16 87.8 106 44.3
CiPaw.01G067100 Carya illinoinensis HOM05D003900 ORTHO05D005009 7.0e-16 87.8 108 42.6
Duzib138G1643 Durio zibethinus HOM05D003900 ORTHO05D005009 7.0e-16 87.8 113 44.2
TWI23G0979 Tripterygium wilfordii HOM05D003900 ORTHO05D005009 7.0e-16 87.8 112 44.6
Manes.05G029400 Manihot esculenta HOM05D003900 ORTHO05D005009 1.6e-15 86.7 106 45.3
Lsat_1_v5_gn_7_2720 Lactuca sativa HOM05D003900 ORTHO05D005009 4.5e-15 85.1 120 42.5
SGA_v2.0_scaffold4G02283 Striga asiatica HOM05D003900 ORTHO05D005009 5.9e-15 84.7 107 43.0
Prupe.2G177500 Prunus persica HOM05D003900 ORTHO05D005009 7.7e-15 84.3 101 45.5
AT3G61520 Arabidopsis thaliana HOM05D003900 ORTHO05D005009 1.3e-14 83.6 106 43.4
AT5G28370 Arabidopsis thaliana HOM05D003900 ORTHO05D005009 1.3e-14 83.6 106 44.3
AT5G28460 Arabidopsis thaliana HOM05D003900 ORTHO05D005009 1.3e-14 83.6 106 44.3
MD07G1131300 Malus domestica HOM05D003900 ORTHO05D005009 1.7e-14 83.2 112 40.2
AL5G43880 Arabidopsis lyrata HOM05D003900 ORTHO05D005009 2.2e-14 82.8 106 43.4
Ah.15g096610 Amaranthus hybridus HOM05D003900 ORTHO05D005009 3.8e-14 82.0 112 42.9
Carub.0005s2821 Capsella rubella HOM05D003900 ORTHO05D005009 3.8e-14 82.0 106 42.5
Thhalv10022571m.g Eutrema salsugineum HOM05D003900 ORTHO05D005009 3.8e-14 82.0 106 41.5
EL10Ac1g00355 Beta vulgaris HOM05D003900 ORTHO05D005009 1.1e-13 80.5 104 45.2
Potri.014G090400 Populus trichocarpa HOM05D003900 ORTHO05D005009 1.9e-13 79.7 108 39.8
Aa31LG10G15460 Aethionema arabicum HOM05D003900 ORTHO05D005009 2.5e-13 79.3 106 43.4
CAN.G1129.41 Capsicum annuum HOM05D003900 ORTHO05D005009 2.5e-13 79.3 80 55.0
FvH4_7g15360 Fragaria vesca HOM05D003900 ORTHO05D005009 9.4e-13 77.4 107 42.1
FAN06G2614 Fragaria x ananassa HOM05D003900 ORTHO05D005009 9.4e-13 77.4 107 42.1
FAN06G4981 Fragaria x ananassa HOM05D003900 ORTHO05D005009 9.4e-13 77.4 107 42.1
RcHm_v2.0_Chr1g0357681 Rosa chinensis HOM05D003900 ORTHO05D005009 1.6e-12 76.6 101 42.6
RcHm_v2.0_Chr3g0468501 Rosa chinensis HOM05D003900 ORTHO05D005009 2.1e-12 76.3 101 41.6
Sabra14G0065500 Salix brachista HOM05D003900 ORTHO05D005009 2.1e-12 76.3 106 37.7
BcaC08g45129 Brassica carinata HOM05D003900 ORTHO05D005009 2.7e-12 75.9 112 40.2
RcHm_v2.0_Chr7g0228211 Rosa chinensis HOM05D003900 ORTHO05D005009 2.7e-12 75.9 101 42.6
TAR629G0263 Trochodendron aralioides HOM05D003900 ORTHO05D005009 2.7e-12 75.9 112 37.5
FAN03G2211 Fragaria x ananassa HOM05D003900 ORTHO05D005009 6.1e-12 74.7 107 42.1
FAN10G3614 Fragaria x ananassa HOM05D003900 ORTHO05D005009 6.1e-12 74.7 107 42.1
A07p25540 Brassica napus HOM05D003900 ORTHO05D005009 8.0e-12 74.3 112 39.3
Cfa003873 Carpinus fangiana HOM05D003900 ORTHO05D005009 8.0e-12 74.3 110 40.9
AUR62004412 Chenopodium quinoa HOM05D003900 ORTHO05D005009 8.0e-12 74.3 102 38.2
arahy.Tifrunner.gnm1.ann1.U9H0N8 Arachis hypogaea HOM05D003900 ORTHO05D005009 1.0e-11 73.9 108 38.9
arahy.Tifrunner.gnm1.ann1.K45FBX Arachis hypogaea HOM05D003900 ORTHO05D005009 1.4e-11 73.6 108 38.9
C06p27530 Brassica napus HOM05D003900 ORTHO05D005009 2.3e-11 72.8 112 39.3
BolC6t37920H Brassica oleracea HOM05D003900 ORTHO05D005009 3.0e-11 72.4 112 38.4
Phvul.002G326200 Phaseolus vulgaris HOM05D003900 ORTHO05D005009 3.0e-11 72.4 109 38.5
BraA07t30195Z Brassica rapa HOM05D003900 ORTHO05D005009 4.0e-11 72.0 105 41.0
FAN04G0755 Fragaria x ananassa HOM05D003900 ORTHO05D005009 4.0e-11 72.0 101 38.6
Sc01g0003220 Simmondsia chinensis HOM05D003900 ORTHO05D005009 4.0e-11 72.0 106 35.8
Aqoxy7G01955 Aquilegia oxysepala HOM05D003900 ORTHO05D005009 1.5e-10 70.1 111 37.8
DCAR_025213 Daucus carota HOM05D003900 ORTHO05D005009 2.0e-10 69.7 112 33.9
FvH4_5g32150 Fragaria vesca HOM05D003900 ORTHO05D005009 2.0e-10 69.7 106 35.8
Lj4g0005982 Lotus japonicus HOM05D003900 ORTHO05D005009 2.0e-10 69.7 111 37.8
PGR142G0969 Punica granatum HOM05D003900 ORTHO05D005009 2.6e-10 69.3 83 43.4
MD01G1071400 Malus domestica HOM05D003900 ORTHO05D005009 5.7e-10 68.2 74 43.2
HanXRQChr04g0120801 Helianthus annuus HOM05D003900 ORTHO05D005009 1.3e-09 67.0 112 35.7
VMungo0251G1173 Vigna mungo HOM05D003900 ORTHO05D005009 1.3e-09 67.0 109 35.8
Eucgr.E00097 Eucalyptus grandis HOM05D003900 ORTHO05D005009 1.7e-09 66.6 104 34.6
AUR62022618 Chenopodium quinoa HOM05D003900 ORTHO05D005009 6.3e-09 64.7 106 36.8
FvH4_5g03011 Fragaria vesca HOM05D003900 ORTHO05D005009 1.1e-08 63.9 101 36.6
Actinidia20162 Actinidia chinensis HOM05D003900 ORTHO05D005009 1.4e-08 63.5 68 45.6
Nn1g01685 Nelumbo nucifera HOM05D003900 ORTHO05D005009 3.1e-08 62.4 106 31.1
CAN.G1417.4 Capsicum annuum HOM05D003900 ORTHO05D005009 4.1e-08 62.0 114 39.5
Oeu015216.1 Olea europaea HOM05D003900 ORTHO05D005009 1.6e-07 60.1 50 56.0
Sed0017189 Sechium edule HOM05D003900 ORTHO05D005009 1.6e-07 60.1 60 45.0
MBI11_g19575_MAGBIO Magnolia biondii HOM05D003900 ORTHO05D005009 7.7e-07 57.8 94 30.9
Lalb_Chr04g0259301 Lupinus albus HOM05D003900 ORTHO05D005009 1.7e-06 56.6 114 31.6
Dinv32521 Davidia involucrata HOM05D003900 ORTHO05D005009 3.8e-06 55.5 51 49.0
FAN01G0431 Fragaria x ananassa HOM05D003900 ORTHO05D005009 5.0e-06 55.1 69 40.6
Glyma.16G031800 Glycine max HOM05D003900 ORTHO05D005009 5.0e-06 55.1 111 31.5
MBI11_g19576_MAGBIO Magnolia biondii HOM05D003900 ORTHO05D005009 5.0e-06 55.1 94 29.8
ClCG09G009150 Citrullus lanatus HOM05D003900 ORTHO05D005009 8.6e-06 54.3 63 39.7


User provided reference genes

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