Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1002.23 Capsicum annuum HOM05D000518 ORTHO05D022158 8.0e-41 169.9 78 100.0
CAN.G2142.3 Capsicum annuum HOM05D000518 ORTHO05D022158 3.1e-21 104.8 79 72.2
CAN.G1976.2 Capsicum annuum HOM05D000518 ORTHO05D022158 3.5e-20 101.3 78 67.9
CAN.G1834.1 Capsicum annuum HOM05D000518 ORTHO05D022158 4.5e-20 100.9 83 66.3
Cc04_g00150 Coffea canephora HOM05D000518 ORTHO05D000737 5.0e-19 97.4 58 81.0
SGA_v2.0_scaffold495G52458 Striga asiatica HOM05D000518 ORTHO05D000737 8.6e-19 96.7 58 79.3
CAN.G264.26 Capsicum annuum HOM05D000518 ORTHO05D000737 1.1e-18 96.3 58 79.3
CiPaw.01G207500 Carya illinoinensis HOM05D000518 ORTHO05D000737 1.1e-18 96.3 58 79.3
CiPaw.02G128500 Carya illinoinensis HOM05D000518 ORTHO05D000737 1.1e-18 96.3 58 79.3
Manes.06G179000 Manihot esculenta HOM05D000518 ORTHO05D000737 1.1e-18 96.3 58 79.3
Oeu052328.1 Olea europaea HOM05D000518 ORTHO05D000737 1.1e-18 96.3 58 79.3
Oeu052329.1 Olea europaea HOM05D000518 ORTHO05D000737 1.1e-18 96.3 58 79.3
Sabra08G0001300 Salix brachista HOM05D000518 ORTHO05D000737 1.1e-18 96.3 58 79.3
Hund05667 Selenicereus undatus HOM05D000518 ORTHO05D000737 1.1e-18 96.3 58 79.3
Solyc04g071880.3 Solanum lycopersicum HOM05D000518 ORTHO05D000737 1.1e-18 96.3 58 79.3
Sopen04g027850 Solanum pennellii HOM05D000518 ORTHO05D000737 1.1e-18 96.3 58 79.3
PGSC0003DMG400025085 Solanum tuberosum HOM05D000518 ORTHO05D000737 1.1e-18 96.3 58 79.3
GSVIVG01029563001 Vitis vinifera HOM05D000518 ORTHO05D000737 1.1e-18 96.3 58 79.3
Zm00001eb135590 Zea mays HOM05D000518 ORTHO05D000737 1.1e-18 96.3 58 79.3
MSTRG.6874 Avicennia marina HOM05D000518 ORTHO05D000737 1.9e-18 95.5 58 79.3
arahy.Tifrunner.gnm1.ann1.35JPC8 Arachis hypogaea HOM05D000518 ORTHO05D000737 2.5e-18 95.1 58 77.6
arahy.Tifrunner.gnm1.ann1.G1ZWS1 Arachis hypogaea HOM05D000518 ORTHO05D000737 2.5e-18 95.1 58 77.6
CSS0006684 Camellia sinensis var. sinensis HOM05D000518 ORTHO05D000737 2.5e-18 95.1 58 77.6
Glyma.08G225500 Glycine max HOM05D000518 ORTHO05D000737 2.5e-18 95.1 58 77.6
Lj9C543G12 Lonicera japonica HOM05D000518 ORTHO05D000737 2.5e-18 95.1 58 77.6
MBI13_g31563_MAGBIO Magnolia biondii HOM05D000518 ORTHO05D000737 2.5e-18 95.1 58 79.3
Oeu042879.1 Olea europaea HOM05D000518 ORTHO05D000737 2.5e-18 95.1 58 79.3
Phvul.010G164900 Phaseolus vulgaris HOM05D000518 ORTHO05D000737 2.5e-18 95.1 58 77.6
Sc12g0011240 Simmondsia chinensis HOM05D000518 ORTHO05D000737 2.5e-18 95.1 58 77.6
Sc12g0011360 Simmondsia chinensis HOM05D000518 ORTHO05D000737 2.5e-18 95.1 58 77.6
VMungo0331G2033 Vigna mungo HOM05D000518 ORTHO05D000737 2.5e-18 95.1 58 77.6
Actinidia21895 Actinidia chinensis HOM05D000518 ORTHO05D000737 3.3e-18 94.7 58 77.6
Ah.08g217850 Amaranthus hybridus HOM05D000518 ORTHO05D000737 3.3e-18 94.7 58 77.6
AUR62001323 Chenopodium quinoa HOM05D000518 ORTHO05D000737 3.3e-18 94.7 58 77.6
AUR62025706 Chenopodium quinoa HOM05D000518 ORTHO05D000737 3.3e-18 94.7 58 77.6
Dinv37775 Davidia involucrata HOM05D000518 ORTHO05D000737 3.3e-18 94.7 58 77.6
PSO063G4458 Papaver somniferum HOM05D000518 ORTHO05D000737 3.3e-18 94.7 58 77.6
PSO170G4965 Papaver somniferum HOM05D000518 ORTHO05D000737 3.3e-18 94.7 58 77.6
THA.LOC104808107 Tarenaya hassleriana HOM05D000518 ORTHO05D000737 3.3e-18 94.7 58 77.6
THA.LOC104812334 Tarenaya hassleriana HOM05D000518 ORTHO05D000737 3.3e-18 94.7 58 77.6
TWI18G0524 Tripterygium wilfordii HOM05D000518 ORTHO05D000737 3.3e-18 94.7 58 77.6
HPP92_025957 Vanilla planifolia HOM05D000518 ORTHO05D000737 3.3e-18 94.7 58 77.6
AL1G28950 Arabidopsis lyrata HOM05D000518 ORTHO05D000737 4.2e-18 94.4 58 75.9
AT1G16780 Arabidopsis thaliana HOM05D000518 ORTHO05D000737 4.2e-18 94.4 58 75.9
Os02g0537900 Oryza sativa ssp. japonica HOM05D000518 ORTHO05D000737 4.2e-18 94.4 58 77.6
Ca_20978_v3 Cicer arietinum L. HOM05D000518 ORTHO05D000737 5.5e-18 94.0 58 75.9
Dinv20326 Davidia involucrata HOM05D000518 ORTHO05D000737 5.5e-18 94.0 58 77.6
ECA247G0909 Erigeron canadensis HOM05D000518 ORTHO05D000737 5.5e-18 94.0 58 75.9
Migut.M01833 Erythranthe guttata HOM05D000518 ORTHO05D000737 5.5e-18 94.0 58 77.6
Glyma.07G001500 Glycine max HOM05D000518 ORTHO05D000737 5.5e-18 94.0 58 75.9
Gohir.A10G001500 Gossypium hirsutum HOM05D000518 ORTHO05D000737 5.5e-18 94.0 58 77.6
Gohir.D10G001600 Gossypium hirsutum HOM05D000518 ORTHO05D000737 5.5e-18 94.0 58 77.6
Gorai.011G002000 Gossypium raimondii HOM05D000518 ORTHO05D000737 5.5e-18 94.0 58 77.6
Peaxi162Scf00079g01916 Petunia axillaris HOM05D000518 ORTHO05D000737 5.5e-18 94.0 58 77.6
Potri.010G254200 Populus trichocarpa HOM05D000518 ORTHO05D000737 5.5e-18 94.0 58 77.6
PGR031G2391 Punica granatum HOM05D000518 ORTHO05D000737 5.5e-18 94.0 58 77.6
Zm00001eb031220 Zea mays HOM05D000518 ORTHO05D000737 5.5e-18 94.0 58 77.6
Atru.chr1.2607 Acer truncatum HOM05D000518 ORTHO05D000737 7.2e-18 93.6 58 75.9
Duzib192G0563 Durio zibethinus HOM05D000518 ORTHO05D000737 7.2e-18 93.6 58 77.6
Manes.14G008800 Manihot esculenta HOM05D000518 ORTHO05D000737 7.2e-18 93.6 58 77.6
TAR383G0005 Trochodendron aralioides HOM05D000518 ORTHO05D000737 7.2e-18 93.6 58 75.9
vmacro18736 Vaccinium macrocarpon HOM05D000518 ORTHO05D000737 7.2e-18 93.6 58 75.9
Aqoxy7G02688 Aquilegia oxysepala HOM05D000518 ORTHO05D000737 9.5e-18 93.2 58 75.9
Duzib235G0117 Durio zibethinus HOM05D000518 ORTHO05D000737 1.2e-17 92.8 58 75.9
Gohir.A06G116100 Gossypium hirsutum HOM05D000518 ORTHO05D000737 1.2e-17 92.8 58 75.9
Gohir.D06G120900 Gossypium hirsutum HOM05D000518 ORTHO05D000737 1.2e-17 92.8 58 75.9
Gorai.010G141300 Gossypium raimondii HOM05D000518 ORTHO05D000737 1.2e-17 92.8 58 75.9
Lalb_Chr04g0264811 Lupinus albus HOM05D000518 ORTHO05D000737 1.2e-17 92.8 58 75.9
Thecc.06G054600 Theobroma cacao HOM05D000518 ORTHO05D000737 1.2e-17 92.8 58 75.9
ATR0626G270 Amborella trichopoda HOM05D000518 ORTHO05D000737 1.6e-17 92.4 58 75.9
EL10Ac7g18127 Beta vulgaris HOM05D000518 ORTHO05D000737 1.6e-17 92.4 58 74.1
Rhsim08G0251300 Rhododendron simsii HOM05D000518 ORTHO05D000737 1.6e-17 92.4 58 75.9
TWI12G1233 Tripterygium wilfordii HOM05D000518 ORTHO05D000737 1.6e-17 92.4 58 75.9
CARHR017240 Cardamine hirsuta HOM05D000518 ORTHO05D000737 2.1e-17 92.0 58 74.1
Nn8g41075 Nelumbo nucifera HOM05D000518 ORTHO05D000737 2.1e-17 92.0 58 74.1
CDE04G3553 Ceratophyllum demersum HOM05D000518 ORTHO05D000737 2.8e-17 91.7 58 74.1
Medtr4g005280 Medicago truncatula HOM05D000518 ORTHO05D000737 2.8e-17 91.7 58 74.1
Psat7g265000 Pisum sativum HOM05D000518 ORTHO05D000737 2.8e-17 91.7 58 74.1
QL05p088440 Quercus lobata HOM05D000518 ORTHO05D000737 2.8e-17 91.7 58 74.1
Sed0023679 Sechium edule HOM05D000518 ORTHO05D000737 2.8e-17 91.7 58 75.9
TPR.G38716 Trifolium pratense HOM05D000518 ORTHO05D000737 2.8e-17 91.7 58 74.1
unitig_899.g15340 Utricularia gibba HOM05D000518 ORTHO05D000737 2.8e-17 91.7 58 75.9
CANSAT01G0920 Cannabis sativa HOM05D000518 ORTHO05D000737 3.6e-17 91.3 58 74.1
ClCG09G001720 Citrullus lanatus HOM05D000518 ORTHO05D000737 3.6e-17 91.3 58 75.9
MELO3C024272.2 Cucumis melo HOM05D000518 ORTHO05D000737 3.6e-17 91.3 58 75.9
Lsat_1_v5_gn_7_12700 Lactuca sativa HOM05D000518 ORTHO05D000737 3.6e-17 91.3 58 72.4
Ciclev10013931m.g Citrus clementina HOM05D000518 ORTHO05D000737 4.7e-17 90.9 58 74.1
Eucgr.J03186 Eucalyptus grandis HOM05D000518 ORTHO05D000737 4.7e-17 90.9 58 75.9
Ah.15g094270 Amaranthus hybridus HOM05D000518 ORTHO05D000737 6.1e-17 90.5 58 75.9
Cfa003430 Carpinus fangiana HOM05D000518 ORTHO05D000737 6.1e-17 90.5 58 74.1
Haze_16202 Corylus avellana HOM05D000518 ORTHO05D000737 6.1e-17 90.5 58 74.1
HanXRQChr05g0129041 Helianthus annuus HOM05D000518 ORTHO05D000737 6.1e-17 90.5 58 72.4
Lj3g0016361 Lotus japonicus HOM05D000518 ORTHO05D000737 6.1e-17 90.5 58 72.4
AL2G39350 Arabidopsis lyrata HOM05D000518 ORTHO05D000737 8.0e-17 90.1 58 72.4
AT1G78920 Arabidopsis thaliana HOM05D000518 ORTHO05D000737 8.0e-17 90.1 58 72.4
BcaB03g16054 Brassica carinata HOM05D000518 ORTHO05D000737 8.0e-17 90.1 58 72.4
BcaB05g25164 Brassica carinata HOM05D000518 ORTHO05D000737 8.0e-17 90.1 58 72.4
BcaC08g47441 Brassica carinata HOM05D000518 ORTHO05D000737 8.0e-17 90.1 58 72.4
A02p22420 Brassica napus HOM05D000518 ORTHO05D000737 8.0e-17 90.1 58 72.4
A07p44090 Brassica napus HOM05D000518 ORTHO05D000737 8.0e-17 90.1 58 72.4
C02p36080 Brassica napus HOM05D000518 ORTHO05D000737 8.0e-17 90.1 58 72.4
C06p52820 Brassica napus HOM05D000518 ORTHO05D000737 8.0e-17 90.1 58 72.4
BolC2t09623H Brassica oleracea HOM05D000518 ORTHO05D000737 8.0e-17 90.1 58 72.4
BolC6t40299H Brassica oleracea HOM05D000518 ORTHO05D000737 8.0e-17 90.1 58 72.4
BraA02t07246Z Brassica rapa HOM05D000518 ORTHO05D000737 8.0e-17 90.1 58 72.4
BraA07t31917Z Brassica rapa HOM05D000518 ORTHO05D000737 8.0e-17 90.1 58 72.4
CARHR072520 Cardamine hirsuta HOM05D000518 ORTHO05D000737 8.0e-17 90.1 58 72.4
Cpa.g.sc176.21 Carica papaya HOM05D000518 ORTHO05D000737 8.0e-17 90.1 58 72.4
CsaV3_7G033610 Cucumis sativus L. HOM05D000518 ORTHO05D000737 8.0e-17 90.1 58 74.1
Thhalv10018137m.g Eutrema salsugineum HOM05D000518 ORTHO05D000737 8.0e-17 90.1 58 72.4
FvH4_6g36660 Fragaria vesca HOM05D000518 ORTHO05D000737 8.0e-17 90.1 58 74.1
FAN02G0571 Fragaria x ananassa HOM05D000518 ORTHO05D000737 8.0e-17 90.1 58 74.1
FAN05G0574 Fragaria x ananassa HOM05D000518 ORTHO05D000737 8.0e-17 90.1 58 74.1
FAN14G3566 Fragaria x ananassa HOM05D000518 ORTHO05D000737 8.0e-17 90.1 58 74.1
MD09G1167000 Malus domestica HOM05D000518 ORTHO05D000737 8.0e-17 90.1 58 74.1
MD17G1161300 Malus domestica HOM05D000518 ORTHO05D000737 8.0e-17 90.1 58 74.1
RcHm_v2.0_Chr2g0149161 Rosa chinensis HOM05D000518 ORTHO05D000737 8.0e-17 90.1 58 74.1
Sp5g33950 Schrenkiella parvula HOM05D000518 ORTHO05D000737 8.0e-17 90.1 58 72.4
Aa31LG4G2070 Aethionema arabicum HOM05D000518 ORTHO05D000737 1.0e-16 89.7 58 72.4
DCAR_007674 Daucus carota HOM05D000518 ORTHO05D000737 1.0e-16 89.7 58 72.4
Carub.0002s2576 Capsella rubella HOM05D000518 ORTHO05D000737 1.4e-16 89.4 58 72.4
CDE02G0119 Ceratophyllum demersum HOM05D000518 ORTHO05D000737 2.3e-16 88.6 58 72.4
Lalb_Chr01g0011621 Lupinus albus HOM05D000518 ORTHO05D000737 2.3e-16 88.6 58 72.4
FAN09G0077 Fragaria x ananassa HOM05D000518 ORTHO05D000737 3.0e-16 88.2 66 65.2
Prupe.3G024800 Prunus persica HOM05D000518 ORTHO05D000737 3.0e-16 88.2 58 72.4
TAR636G2928 Trochodendron aralioides HOM05D000518 ORTHO05D000737 3.0e-16 88.2 58 72.4
Mapoly0177s0007 Marchantia polymorpha HOM05D000518 ORTHO05D000737 5.2e-16 87.4 58 72.4
SEGI_16095 Sequoiadendron giganteum HOM05D000518 ORTHO05D000737 2.0e-15 85.5 58 69.0
SEGI_21310 Sequoiadendron giganteum HOM05D000518 ORTHO05D000737 2.0e-15 85.5 58 69.0
SMO271G0014 Selaginella moellendorffii HOM05D000518 ORTHO05D000737 2.6e-15 85.1 58 67.2
Pp3c1_35630 Physcomitrium patens HOM05D000518 ORTHO05D000737 7.5e-15 83.6 58 67.2
Pp3c17_11450 Physcomitrium patens HOM05D000518 ORTHO05D000737 9.8e-15 83.2 58 67.2
CBR_g3376 Chara braunii HOM05D000518 ORTHO05D000737 2.2e-14 82.0 58 65.5
PRCOL_00007020 Prasinoderma coloniale HOM05D000518 ORTHO05D000737 4.1e-13 77.8 58 62.1
AagrBONN_evm.TU.Sc2ySwM_228.3551 Anthoceros agrestis HOM05D000518 ORTHO05D000737 1.2e-12 76.3 57 59.6
MCO15G560 Micromonas commoda HOM05D000518 ORTHO05D000737 1.6e-12 75.9 58 58.6
Sabra10G0197700 Salix brachista HOM05D000518 ORTHO05D000737 5.6e-10 67.4 58 58.6
CAN.G51.4 Capsicum annuum HOM05D000518 ORTHO05D022158 2.3e-08 62.0 81 51.9


User provided reference genes

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