Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1001.31 Capsicum annuum HOM05D007533 ORTHO05D009622 2.0e-104 382.5 199 100.0
Solyc00g500302.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 8.4e-95 350.5 199 93.0
Solyc11g063573.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 8.4e-95 350.5 199 93.0
Solyc00g500173.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 3.5e-93 345.1 199 91.5
CAN.G2446.3 Capsicum annuum HOM05D007533 ORTHO05D009622 7.9e-93 344.0 199 92.5
CAN.G2792.1 Capsicum annuum HOM05D007533 ORTHO05D009622 7.9e-93 344.0 199 92.5
Peaxi162Scf00651g00636 Petunia axillaris HOM05D007533 ORTHO05D009622 4.2e-86 321.6 189 89.4
LjContig00439g0010342 Lotus japonicus HOM05D007533 ORTHO05D009622 4.3e-83 311.6 195 84.1
LjContig00439g0021951 Lotus japonicus HOM05D007533 ORTHO05D009622 4.3e-83 311.6 195 84.1
Glyma.17G185600 Glycine max HOM05D007533 ORTHO05D009622 1.4e-81 306.6 195 82.6
Thhalv10023156m.g Eutrema salsugineum HOM05D007533 ORTHO05D009622 1.2e-80 303.5 189 85.7
AL9U10720 Arabidopsis lyrata HOM05D007533 ORTHO05D009622 5.8e-80 301.2 189 84.7
Lalb_Chr00c21g0405841 Lupinus albus HOM05D007533 ORTHO05D009622 1.7e-79 299.7 188 83.5
Lalb_Chr00c24g0407011 Lupinus albus HOM05D007533 ORTHO05D009622 1.7e-79 299.7 188 83.5
MSTRG.26054 Avicennia marina HOM05D007533 ORTHO05D009622 4.9e-79 298.1 199 80.4
ATMG00640 Arabidopsis thaliana HOM05D007533 ORTHO05D009622 8.4e-79 297.4 189 83.6
CANSAT16G0029 Cannabis sativa HOM05D007533 ORTHO05D009622 8.4e-79 297.4 199 80.9
Nn1g09978 Nelumbo nucifera HOM05D007533 ORTHO05D009622 1.9e-78 296.2 199 81.4
Nn1g10040 Nelumbo nucifera HOM05D007533 ORTHO05D009622 1.9e-78 296.2 199 81.4
CARHR283000 Cardamine hirsuta HOM05D007533 ORTHO05D009622 7.1e-78 294.3 189 83.1
Hma1.2p1_0136F.1_g062009 Hydrangea macrophylla HOM05D007533 ORTHO05D009622 7.1e-78 294.3 189 83.1
Potri.007G061641 Populus trichocarpa HOM05D007533 ORTHO05D009622 9.3e-78 293.9 199 80.4
Potri.007G062602 Populus trichocarpa HOM05D007533 ORTHO05D009622 9.3e-78 293.9 199 80.4
Lj2P1223T74 Lonicera japonica HOM05D007533 ORTHO05D009622 4.6e-77 291.6 189 82.5
Lj2P1228T84 Lonicera japonica HOM05D007533 ORTHO05D009622 4.6e-77 291.6 189 82.5
Lj2P1231T101 Lonicera japonica HOM05D007533 ORTHO05D009622 4.6e-77 291.6 189 82.5
RcHm_v2.0_MTg0498351 Rosa chinensis HOM05D007533 ORTHO05D009622 6.0e-77 291.2 199 78.4
Ah.10g028150 Amaranthus hybridus HOM05D007533 ORTHO05D009622 7.9e-77 290.8 193 80.3
Nitab4.5_0010333g0060 Nicotiana tabacum HOM05D007533 ORTHO05D009622 2.3e-76 289.3 171 89.5
Aqoxy23s008 Aquilegia oxysepala HOM05D007533 ORTHO05D009622 6.7e-76 287.7 196 79.6
DCAR_032459 Daucus carota HOM05D007533 ORTHO05D009622 6.7e-76 287.7 189 82.0
Aqoxy1G02967 Aquilegia oxysepala HOM05D007533 ORTHO05D009622 1.9e-75 286.2 196 79.1
Sed0020832 Sechium edule HOM05D007533 ORTHO05D009622 7.4e-75 284.3 195 79.0
CsaV3_UNG210000 Cucumis sativus L. HOM05D007533 ORTHO05D009622 1.6e-74 283.1 195 79.0
HanXRQChr16g0504431 Helianthus annuus HOM05D007533 ORTHO05D009622 2.1e-74 282.7 189 81.5
HanXRQMTg0579131 Helianthus annuus HOM05D007533 ORTHO05D009622 2.1e-74 282.7 189 81.5
Lsat_1_v5_gn_0_35060 Lactuca sativa HOM05D007533 ORTHO05D009622 2.1e-74 282.7 189 81.5
HanXRQChr09g0253411 Helianthus annuus HOM05D007533 ORTHO05D009622 1.8e-73 279.6 189 81.0
Gorai.001G167400 Gossypium raimondii HOM05D007533 ORTHO05D009622 3.1e-73 278.9 195 78.5
PGSC0003DMG400026520 Solanum tuberosum HOM05D007533 ORTHO05D009622 5.3e-73 278.1 155 92.9
arahy.Tifrunner.gnm1.ann1.6ILC2A Arachis hypogaea HOM05D007533 ORTHO05D009622 2.6e-72 275.8 174 82.8
arahy.Tifrunner.gnm1.ann1.R8TWAM Arachis hypogaea HOM05D007533 ORTHO05D009622 2.6e-72 275.8 174 82.8
Sopen00g001050 Solanum pennellii HOM05D007533 ORTHO05D009622 3.2e-70 268.9 150 92.0
AUR62042328 Chenopodium quinoa HOM05D007533 ORTHO05D009622 4.2e-70 268.5 180 80.0
MBI05_g05359_MAGBIO Magnolia biondii HOM05D007533 ORTHO05D009622 1.8e-68 263.1 182 78.0
Dinv06666 Davidia involucrata HOM05D007533 ORTHO05D009622 2.3e-68 262.7 171 81.3
Aa31csc1168G30 Aethionema arabicum HOM05D007533 ORTHO05D009622 1.9e-67 259.6 158 86.1
Lj2P1226T70 Lonicera japonica HOM05D007533 ORTHO05D009622 1.9e-67 259.6 164 84.1
Nitab4.5_0010033g0020 Nicotiana tabacum HOM05D007533 ORTHO05D009622 1.1e-65 253.8 150 86.7
QL12p027939 Quercus lobata HOM05D007533 ORTHO05D009622 4.1e-65 251.9 178 74.7
PGSC0003DMG400030942 Solanum tuberosum HOM05D007533 ORTHO05D009622 5.9e-64 248.1 143 88.1
Aqoxy12s024 Aquilegia oxysepala HOM05D007533 ORTHO05D009622 3.8e-63 245.4 150 88.0
CARHR288330 Cardamine hirsuta HOM05D007533 ORTHO05D009622 2.5e-62 242.7 146 87.0
RhsimMtG0003100 Rhododendron simsii HOM05D007194 ORTHO05D009182 7.2e-62 241.1 147 86.4
RhsimMtG0007900 Rhododendron simsii HOM05D007194 ORTHO05D009182 7.2e-62 241.1 147 86.4
Peaxi162Scf01098g00002 Petunia axillaris HOM05D007533 ORTHO05D009622 3.6e-61 238.8 160 80.0
Ah.02g111570 Amaranthus hybridus HOM05D007533 ORTHO05D009622 3.3e-59 232.3 153 78.4
ATR0155G001 Amborella trichopoda HOM05D007533 ORTHO05D009622 3.7e-58 228.8 158 78.5
Nitab4.5_0012599g0080 Nicotiana tabacum HOM05D007533 ORTHO05D009622 1.4e-57 226.9 133 88.0
CDE02G4305 Ceratophyllum demersum HOM05D007533 ORTHO05D009622 1.8e-57 226.5 147 81.6
A04p09330 Brassica napus HOM05D007533 ORTHO05D009622 2.4e-57 226.1 185 69.2
BraSC48t46232Z Brassica rapa HOM05D007533 ORTHO05D009622 2.4e-57 226.1 185 69.2
BraSC48t46320Z Brassica rapa HOM05D007533 ORTHO05D009622 2.4e-57 226.1 185 69.2
SabraMtG0004200 Salix brachista HOM05D007533 ORTHO05D009622 4.1e-57 225.3 189 68.3
C01p34790 Brassica napus HOM05D007533 ORTHO05D009622 1.2e-56 223.8 185 68.1
Nitab4.5_0000172g1940 Nicotiana tabacum HOM05D007533 ORTHO05D009622 2.2e-55 219.5 187 69.5
SGA_v2.0_scaffold255G45496 Striga asiatica HOM05D001560 ORTHO05D003613 2.5e-54 216.1 135 83.0
AL6G41410 Arabidopsis lyrata HOM05D007533 ORTHO05D009622 1.2e-53 213.8 145 78.6
BolSC28t60309H Brassica oleracea HOM05D007533 ORTHO05D009622 1.4e-52 210.3 132 81.8
BolSC28t60365H Brassica oleracea HOM05D007533 ORTHO05D009622 1.4e-52 210.3 132 81.8
arahy.Tifrunner.gnm1.ann1.2HU8EJ Arachis hypogaea HOM05D002660 ORTHO05D009622 2.6e-51 206.1 122 86.1
arahy.Tifrunner.gnm1.ann1.PN90EB Arachis hypogaea HOM05D007533 ORTHO05D009622 2.6e-51 206.1 122 86.1
Ca_07436_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 7.7e-48 194.5 111 88.3
Ca_07440_v3 Cicer arietinum L. HOM05D007194 ORTHO05D009182 1.9e-46 189.9 111 87.4
TPR.G21214 Trifolium pratense HOM05D007533 ORTHO05D009622 3.2e-46 189.1 119 80.7
unitig_87.g27950 Utricularia gibba HOM05D007533 ORTHO05D009622 1.6e-45 186.8 148 67.6
Lsat_1_v5_gn_5_43041 Lactuca sativa HOM05D007533 ORTHO05D009622 7.7e-40 167.9 115 80.0
SalBow1G6690 Salvia bowleyana HOM05D007533 ORTHO05D009622 1.7e-39 166.8 122 70.5
BolC1t03447H Brassica oleracea HOM05D007533 ORTHO05D009622 1.0e-36 157.5 99 84.8
CAN.G649.12 Capsicum annuum HOM05D007533 ORTHO05D009622 6.8e-36 154.8 89 87.6
SHI34934 Sapria himalayana HOM05D004909 ORTHO05D009316 8.8e-36 154.5 99 77.8
HanXRQChr07g0189001 Helianthus annuus HOM05D007533 ORTHO05D009622 2.6e-35 152.9 97 87.6
BraSC54t46363Z Brassica rapa HOM05D007533 ORTHO05D009622 2.0e-32 143.3 93 83.9
Nitab4.5_0010333g0150 Nicotiana tabacum HOM05D007533 ORTHO05D009622 1.3e-31 140.6 88 87.5
Nitab4.5_0010333g0120 Nicotiana tabacum HOM05D007533 ORTHO05D009622 5.0e-31 138.7 79 88.6
FAN20G2339 Fragaria x ananassa HOM05D007533 ORTHO05D010378 1.9e-30 136.7 84 85.7
TPR.G39970 Trifolium pratense HOM05D007533 ORTHO05D009622 2.8e-26 122.9 75 89.3
SHI23927 Sapria himalayana HOM05D007533 ORTHO05D009622 1.2e-24 117.5 76 76.3
C03p57120 Brassica napus HOM05D007533 ORTHO05D009622 3.8e-23 112.5 91 64.8
BolC3t17989H Brassica oleracea HOM05D007533 ORTHO05D009622 3.8e-23 112.5 91 64.8
HanXRQChr17g0567331 Helianthus annuus HOM05D007533 ORTHO05D009622 1.2e-21 107.5 81 70.4
Nitab4.5_0000034g0140 Nicotiana tabacum HOM05D007533 ORTHO05D009622 3.6e-21 105.9 61 88.5
Peaxi162Scf01098g00011 Petunia axillaris HOM05D007533 ORTHO05D009622 1.4e-20 104.0 64 84.4
Nitab4.5_0000068g0090 Nicotiana tabacum HOM05D007533 ORTHO05D009622 2.3e-20 103.2 68 85.3
SHI19535 Sapria himalayana HOM05D000105 ORTHO05D000023 2.6e-19 99.8 76 67.1
Nitab4.5_0002253g0020 Nicotiana tabacum HOM05D007533 ORTHO05D009622 5.7e-19 98.6 65 76.9
Nitab4.5_0000172g2020 Nicotiana tabacum HOM05D007533 ORTHO05D009622 4.9e-18 95.5 83 67.5
ATR0807G043 Amborella trichopoda HOM05D007533 ORTHO05D009622 6.4e-18 95.1 68 75.0
SHI19534 Sapria himalayana HOM05D007533 ORTHO05D010378 1.4e-17 94.0 96 61.5
Lsat_1_v5_gn_1_118900 Lactuca sativa HOM05D007533 ORTHO05D009622 2.4e-17 93.2 73 65.8
Solyc06g042990.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 2.0e-16 90.1 68 67.6
Gohir.D01G116666 Gossypium hirsutum HOM05D007533 ORTHO05D009622 3.9e-15 85.9 65 66.2
Oeu041867.1 Olea europaea HOM05D007533 ORTHO05D009622 1.2e-13 80.9 47 83.0
Peaxi162Scf00673g00229 Petunia axillaris HOM05D011380 ORTHO05D016005 3.4e-11 72.8 43 93.0
Nitab4.5_0000832g0090 Nicotiana tabacum HOM05D007533 ORTHO05D009622 9.8e-11 71.2 45 77.8
CDE02G0940 Ceratophyllum demersum HOM05D000131 ORTHO05D000086 2.0e-08 63.5 39 74.4
Potri.007G062422 Populus trichocarpa HOM05D007533 ORTHO05D010378 6.0e-08 62.0 59 64.4


User provided reference genes

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