Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1001.2 Capsicum annuum HOM05D006507 ORTHO05D007296 0.0e+00 2087.4 1060 100.0
PGSC0003DMG400007499 Solanum tuberosum HOM05D006507 ORTHO05D007296 0.0e+00 1503.0 1058 76.2
Sopen06g031820 Solanum pennellii HOM05D006507 ORTHO05D007296 0.0e+00 1475.7 1090 73.2
Nitab4.5_0000270g0010 Nicotiana tabacum HOM05D006507 ORTHO05D007296 0.0e+00 1393.3 1092 70.5
Solyc06g075420.1 Solanum lycopersicum HOM05D006507 ORTHO05D007296 0.0e+00 1377.8 1033 72.3
Nitab4.5_0001698g0050 Nicotiana tabacum HOM05D006507 ORTHO05D007296 0.0e+00 1323.9 1100 67.9
Peaxi162Scf00072g00226 Petunia axillaris HOM05D006507 ORTHO05D007296 1.0e-308 1063.5 1039 60.2
Sopen02g037950 Solanum pennellii HOM05D000002 ORTHO05D000001 7.0e-156 555.8 410 72.0
Sopen02g037960 Solanum pennellii HOM05D006507 ORTHO05D007296 7.0e-47 193.7 116 84.5
Atru.chr3.3722 Acer truncatum HOM05D006507 ORTHO05D007296 1.7e-32 146.0 1149 23.7
Migut.N02633 Erythranthe guttata HOM05D006507 ORTHO05D007296 6.4e-32 144.1 1096 24.0
CSS0009997 Camellia sinensis var. sinensis HOM05D006507 ORTHO05D007296 2.3e-29 135.6 1126 23.6
Dinv32808 Davidia involucrata HOM05D006507 ORTHO05D007296 2.5e-28 132.1 90 67.8
Cc01_g11720 Coffea canephora HOM05D006507 ORTHO05D007296 1.6e-27 129.4 173 43.9
TWI79G0725 Tripterygium wilfordii HOM05D006507 ORTHO05D007296 2.8e-27 128.6 1120 23.0
MSTRG.12615 Avicennia marina HOM05D006507 ORTHO05D007296 3.6e-27 128.3 1079 23.8
Atru.chr3.3727 Acer truncatum HOM05D006507 ORTHO05D007296 2.3e-26 125.6 126 54.0
Prupe.6G092200 Prunus persica HOM05D006507 ORTHO05D007296 5.2e-26 124.4 156 46.8
Rhsim13G0091300 Rhododendron simsii HOM05D006507 ORTHO05D007296 5.2e-26 124.4 1138 24.1
Sabra05G0106900 Salix brachista HOM05D006507 ORTHO05D007296 5.2e-26 124.4 403 28.8
SalBow3G2105 Salvia bowleyana HOM05D006507 ORTHO05D007296 6.8e-26 124.0 1070 24.1
DCAR_006032 Daucus carota HOM05D006507 ORTHO05D007296 3.4e-25 121.7 222 37.4
vmacro03159 Vaccinium macrocarpon HOM05D006507 ORTHO05D007296 4.4e-25 121.3 135 48.1
Potri.005G131500 Populus trichocarpa HOM05D006507 ORTHO05D007296 7.5e-25 120.6 1213 23.4
Manes.11G139900 Manihot esculenta HOM05D006507 ORTHO05D007296 9.8e-25 120.2 339 31.6
GSVIVG01025113001 Vitis vinifera HOM05D038408 ORTHO05D007296 2.9e-24 118.6 190 38.9
Thecc.09G262500 Theobroma cacao HOM05D006507 ORTHO05D007296 3.7e-24 118.2 1235 23.9
Ciclev10027733m.g Citrus clementina HOM05D006507 ORTHO05D007296 6.4e-24 117.5 389 29.0
HanXRQChr06g0183281 Helianthus annuus HOM05D006507 ORTHO05D007296 8.3e-24 117.1 156 42.9
RcHm_v2.0_Chr5g0061361 Rosa chinensis HOM05D006507 ORTHO05D007296 8.3e-24 117.1 188 41.0
Gohir.D07G120101 Gossypium hirsutum HOM05D006507 ORTHO05D007296 1.4e-23 116.3 75 72.0
Gorai.001G129300 Gossypium raimondii HOM05D006507 ORTHO05D007296 1.4e-23 116.3 75 72.0
Cpa.g.sc139.57 Carica papaya HOM05D006507 ORTHO05D007296 1.9e-23 115.9 85 64.7
Gohir.A07G115600 Gossypium hirsutum HOM05D006507 ORTHO05D007296 1.9e-23 115.9 1149 23.3
SGA_v2.0_scaffold80G25739 Striga asiatica HOM05D006507 ORTHO05D007296 2.4e-23 115.5 63 79.4
Actinidia08403 Actinidia chinensis HOM05D006507 ORTHO05D007296 7.0e-23 114.0 71 73.2
CANSAT54G2524 Cannabis sativa HOM05D006507 ORTHO05D007296 7.0e-23 114.0 128 51.6
ECA238G2561 Erigeron canadensis HOM05D006507 ORTHO05D007296 7.0e-23 114.0 263 32.3
PSO384G3963 Papaver somniferum HOM05D006507 ORTHO05D007296 9.2e-23 113.6 319 31.7
Sc21g0000130 Simmondsia chinensis HOM05D006507 ORTHO05D007296 1.2e-22 113.2 127 48.0
Thhalv10012478m.g Eutrema salsugineum HOM05D006507 ORTHO05D007296 2.0e-22 112.5 138 47.8
PSO339G6510 Papaver somniferum HOM05D006507 ORTHO05D007296 2.7e-22 112.1 317 30.9
PGR102G3212 Punica granatum HOM05D006507 ORTHO05D007296 3.5e-22 111.7 103 56.3
QL01p036413 Quercus lobata HOM05D006507 ORTHO05D007296 4.6e-22 111.3 87 62.1
Sp6g21800 Schrenkiella parvula HOM05D006507 ORTHO05D007296 4.6e-22 111.3 116 51.7
VMungo1127G1622 Vigna mungo HOM05D006507 ORTHO05D007296 6.0e-22 110.9 135 43.0
MD03G1109500 Malus domestica HOM05D006507 ORTHO05D007296 1.0e-21 110.2 204 40.2
CARHR273800 Cardamine hirsuta HOM05D006507 ORTHO05D007296 1.3e-21 109.8 132 46.2
Aqoxy2G01879 Aquilegia oxysepala HOM05D006507 ORTHO05D007296 1.7e-21 109.4 154 44.2
Oeu022272.1 Olea europaea HOM05D006507 ORTHO05D007296 1.7e-21 109.4 1094 23.1
C09p52640 Brassica napus HOM05D006507 ORTHO05D007296 2.3e-21 109.0 129 46.5
FAN11G1966 Fragaria x ananassa HOM05D006507 ORTHO05D007296 2.3e-21 109.0 219 36.1
AT5G60150 Arabidopsis thaliana HOM05D006507 ORTHO05D007296 3.9e-21 108.2 132 46.2
BraA10t43814Z Brassica rapa HOM05D006507 ORTHO05D007296 3.9e-21 108.2 129 46.5
COL.COLO4_25271 Corchorus olitorius HOM05D006507 ORTHO05D007296 3.9e-21 108.2 353 29.7
AL8G36760 Arabidopsis lyrata HOM05D006507 ORTHO05D007296 5.0e-21 107.8 79 63.3
A10p17300 Brassica napus HOM05D006507 ORTHO05D007296 8.6e-21 107.1 79 62.0
BolC9t58131H Brassica oleracea HOM05D006507 ORTHO05D007296 1.1e-20 106.7 114 49.1
Duzib170G0831 Durio zibethinus HOM05D006507 ORTHO05D007296 1.1e-20 106.7 368 31.5
Glyma.11G150661 Glycine max HOM05D006507 ORTHO05D007296 1.1e-20 106.7 134 42.5
Carub.0008s2088 Capsella rubella HOM05D006507 ORTHO05D007296 1.9e-20 105.9 79 62.0
THA.LOC104810833 Tarenaya hassleriana HOM05D006507 ORTHO05D007296 7.3e-20 104.0 78 64.1
Lsat_1_v5_gn_2_25380 Lactuca sativa HOM05D006507 ORTHO05D007296 1.2e-19 103.2 60 78.3
MELO3C025723.2 Cucumis melo HOM05D006507 ORTHO05D007296 2.1e-19 102.4 154 40.9
Lj2A1039T65 Lonicera japonica HOM05D006507 ORTHO05D007296 2.1e-19 102.4 716 24.3
Glyma.12G072900 Glycine max HOM05D006507 ORTHO05D007296 1.8e-18 99.4 239 32.6
Lalb_Chr19g0137501 Lupinus albus HOM05D006507 ORTHO05D007296 1.8e-18 99.4 72 63.9
TAR633G2802 Trochodendron aralioides HOM05D006507 ORTHO05D007296 2.3e-18 99.0 1113 24.0
Medtr4g061110 Medicago truncatula HOM05D006507 ORTHO05D007296 4.0e-18 98.2 66 68.2
arahy.Tifrunner.gnm1.ann1.NP2AMW Arachis hypogaea HOM05D006507 ORTHO05D007296 5.2e-18 97.8 68 70.6
arahy.Tifrunner.gnm1.ann1.M2HQ4Q Arachis hypogaea HOM05D006507 ORTHO05D007296 6.8e-18 97.4 68 70.6
ClCG02G020740 Citrullus lanatus HOM05D006507 ORTHO05D007296 1.5e-17 96.3 1125 22.8
TPR.G2995 Trifolium pratense HOM05D006507 ORTHO05D007296 2.0e-17 95.9 102 47.1
Lj3g0018374 Lotus japonicus HOM05D006507 ORTHO05D007296 3.4e-17 95.1 172 39.5
FAN16G3496 Fragaria x ananassa HOM05D006507 ORTHO05D007296 4.4e-17 94.7 214 36.9
Psat7g223080 Pisum sativum HOM05D006507 ORTHO05D007296 1.3e-16 93.2 68 64.7
Cfa011382 Carpinus fangiana HOM05D006507 ORTHO05D007296 1.7e-16 92.8 1152 23.3
SEGI_16529 Sequoiadendron giganteum HOM05D006507 ORTHO05D007296 2.9e-16 92.0 66 60.6
HPP92_026984 Vanilla planifolia HOM05D006507 ORTHO05D007296 2.9e-16 92.0 99 47.5
HPP92_015411 Vanilla planifolia HOM05D006507 ORTHO05D007296 4.9e-16 91.3 99 47.5
AUR62006495 Chenopodium quinoa HOM05D006507 ORTHO05D007296 1.4e-15 89.7 72 59.7
Actinidia24071 Actinidia chinensis HOM05D006507 ORTHO05D007296 2.4e-15 89.0 1060 23.7
Actinidia07103 Actinidia chinensis HOM05D006507 ORTHO05D007296 3.2e-15 88.6 361 26.6
AUR62025040 Chenopodium quinoa HOM05D006507 ORTHO05D007296 3.2e-15 88.6 72 58.3
Hma1.2p1_0840F.1_g226520 Hydrangea macrophylla HOM05D006507 ORTHO05D007296 3.2e-15 88.6 54 77.8
Os12g0102700 Oryza sativa ssp. japonica HOM05D006507 ORTHO05D007296 5.4e-15 87.8 330 24.8
CiPaw.13G105600 Carya illinoinensis HOM05D006507 ORTHO05D007296 1.0e-13 83.6 72 54.2
Ca_19235_v3 Cicer arietinum L. HOM05D006507 ORTHO05D007296 3.9e-13 81.6 1109 21.8
Sed0026220 Sechium edule HOM05D006507 ORTHO05D007296 6.6e-13 80.9 49 77.6
Haze_23947 Corylus avellana HOM05D006507 ORTHO05D007296 1.9e-12 79.3 106 43.4
AagrBONN_evm.TU.Sc2ySwM_368.2680 Anthoceros agrestis HOM05D006507 ORTHO05D007296 2.5e-12 79.0 57 61.4
EL10Ac9g22402 Beta vulgaris HOM05D006507 ORTHO05D007296 2.5e-12 79.0 208 26.4
CsaV3_6G021880 Cucumis sativus L. HOM05D006507 ORTHO05D007296 1.2e-11 76.6 123 39.0
Sc24g0004230 Simmondsia chinensis HOM05D009348 ORTHO05D010856 1.2e-11 76.6 131 40.5
Pp3c16_7200 Physcomitrium patens HOM05D034648 ORTHO05D007296 2.1e-11 75.9 68 50.0
Hma1.2p1_0660F.1_g197490 Hydrangea macrophylla HOM05D006507 ORTHO05D007296 2.0e-09 69.3 70 51.4
ATR1159G075 Amborella trichopoda HOM05D006507 ORTHO05D007296 2.6e-09 68.9 43 69.8
CBR_g19214 Chara braunii HOM05D006507 ORTHO05D007296 4.9e-08 64.7 73 49.3
Mapoly0001s0188 Marchantia polymorpha HOM05D006507 ORTHO05D007296 4.9e-08 64.7 58 53.4


User provided reference genes

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