Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G100.73 Capsicum annuum HOM05D004265 ORTHO05D005175 3.1e-98 362.1 219 100.0
Solyc01g079460.2 Solanum lycopersicum HOM05D004265 ORTHO05D005175 5.4e-87 324.7 219 88.1
Sopen01g031230 Solanum pennellii HOM05D004265 ORTHO05D005175 3.5e-86 322.0 219 87.7
PGSC0003DMG400009008 Solanum tuberosum HOM05D004265 ORTHO05D005175 1.4e-82 310.1 206 90.8
Nitab4.5_0003540g0020 Nicotiana tabacum HOM05D004265 ORTHO05D005175 8.4e-80 300.8 219 84.0
Peaxi162Scf00691g00218 Petunia axillaris HOM05D004265 ORTHO05D005175 1.9e-60 236.5 172 86.6
Nitab4.5_0008277g0030 Nicotiana tabacum HOM05D004265 ORTHO05D005175 3.3e-60 235.7 174 87.4
Rhsim01G0290900 Rhododendron simsii HOM05D004265 ORTHO05D005175 5.0e-56 221.9 217 61.3
Actinidia25851 Actinidia chinensis HOM05D004265 ORTHO05D005175 3.9e-53 212.2 193 53.9
Lj2A1205T38 Lonicera japonica HOM05D004265 ORTHO05D005175 1.1e-52 210.7 213 62.9
Dinv10100 Davidia involucrata HOM05D004265 ORTHO05D005175 4.8e-51 205.3 198 62.6
GSVIVG01019978001 Vitis vinifera HOM05D000618 ORTHO05D000454 9.1e-50 201.1 211 61.6
CSS0024329 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 4.2e-47 192.2 202 47.5
CSS0041734 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 4.2e-47 192.2 202 47.5
Cpa.g.sc48.160 Carica papaya HOM05D004265 ORTHO05D005175 1.1e-44 184.1 198 46.5
SalBow2G0857 Salvia bowleyana HOM05D004265 ORTHO05D005175 5.7e-44 181.8 192 59.4
Atru.chr2.195 Acer truncatum HOM05D004265 ORTHO05D005175 1.3e-43 180.6 207 46.4
CANSAT54G0622 Cannabis sativa HOM05D004265 ORTHO05D005175 2.8e-43 179.5 207 44.4
Thecc.05G323000 Theobroma cacao HOM05D004265 ORTHO05D005175 3.7e-43 179.1 207 44.4
Eucgr.H03290 Eucalyptus grandis HOM05D004265 ORTHO05D005175 1.8e-42 176.8 213 45.5
Glyma.19G228500 Glycine max HOM05D004265 ORTHO05D005175 1.8e-42 176.8 212 49.5
CiPaw.07G029600 Carya illinoinensis HOM05D004265 ORTHO05D005175 2.4e-42 176.4 206 56.3
Actinidia01508 Actinidia chinensis HOM05D004265 ORTHO05D005175 6.9e-42 174.9 206 44.2
Cfa006702 Carpinus fangiana HOM05D004265 ORTHO05D005175 9.1e-42 174.5 206 57.3
CiPaw.08G155500 Carya illinoinensis HOM05D004265 ORTHO05D005175 9.1e-42 174.5 206 44.7
Duzib177G0587 Durio zibethinus HOM05D004265 ORTHO05D005175 9.1e-42 174.5 207 55.6
ECA234G3802 Erigeron canadensis HOM05D004265 ORTHO05D005175 9.1e-42 174.5 213 43.7
Glyma.10G147100 Glycine max HOM05D004265 ORTHO05D005175 9.1e-42 174.5 208 44.7
Glyma.20G097600 Glycine max HOM05D004265 ORTHO05D005175 9.1e-42 174.5 208 42.8
arahy.Tifrunner.gnm1.ann1.7983KJ Arachis hypogaea HOM05D004265 ORTHO05D005175 1.2e-41 174.1 212 43.9
Hma1.2p1_0052F.1_g030750 Hydrangea macrophylla HOM05D004265 ORTHO05D005175 1.2e-41 174.1 206 51.0
Phvul.007G201300 Phaseolus vulgaris HOM05D004265 ORTHO05D005175 1.2e-41 174.1 201 44.8
QL03p039848 Quercus lobata HOM05D004265 ORTHO05D005175 1.2e-41 174.1 206 45.6
Lj5g0009766 Lotus japonicus HOM05D004265 ORTHO05D005175 2.0e-41 173.3 201 45.3
TWI56G1455 Tripterygium wilfordii HOM05D004265 ORTHO05D005175 2.0e-41 173.3 209 44.5
VMungo0720G2336 Vigna mungo HOM05D004265 ORTHO05D005175 2.0e-41 173.3 201 44.3
Medtr1g084040 Medicago truncatula HOM05D004265 ORTHO05D005175 2.6e-41 172.9 198 44.9
arahy.Tifrunner.gnm1.ann1.S7F1TF Arachis hypogaea HOM05D004265 ORTHO05D005175 3.4e-41 172.6 212 43.4
Carub.0002s0772 Capsella rubella HOM05D004265 ORTHO05D005175 3.4e-41 172.6 197 47.7
CARHR055200 Cardamine hirsuta HOM05D004265 ORTHO05D005175 5.9e-41 171.8 199 50.3
Potri.013G008700 Populus trichocarpa HOM05D004265 ORTHO05D005175 7.7e-41 171.4 207 47.8
Manes.08G111300 Manihot esculenta HOM05D004265 ORTHO05D005175 1.7e-40 170.2 200 56.0
Sabra05G0011400 Salix brachista HOM05D004265 ORTHO05D005175 2.2e-40 169.9 209 48.8
GSVIVG01031240001 Vitis vinifera HOM05D004265 ORTHO05D005175 2.2e-40 169.9 212 48.6
MD12G1206000 Malus domestica HOM05D004265 ORTHO05D005175 2.9e-40 169.5 212 43.4
SalBow7G1726 Salvia bowleyana HOM05D004265 ORTHO05D005175 2.9e-40 169.5 208 43.8
QL03p013649 Quercus lobata HOM05D004265 ORTHO05D005175 3.8e-40 169.1 190 46.3
Dinv30893 Davidia involucrata HOM05D004265 ORTHO05D005175 5.0e-40 168.7 189 45.0
Sc16g0009030 Simmondsia chinensis HOM05D004265 ORTHO05D005175 6.5e-40 168.3 203 45.8
Lj1g0016387 Lotus japonicus HOM05D004265 ORTHO05D005175 1.1e-39 167.5 207 44.9
MBI18_g17317_MAGBIO Magnolia biondii HOM05D004265 ORTHO05D005175 1.4e-39 167.2 203 45.3
Sp2g06420 Schrenkiella parvula HOM05D004265 ORTHO05D005175 1.9e-39 166.8 206 51.0
Migut.B00969 Erythranthe guttata HOM05D004265 ORTHO05D005175 4.2e-39 165.6 213 44.6
Lsat_1_v5_gn_5_104100 Lactuca sativa HOM05D004265 ORTHO05D005175 4.2e-39 165.6 198 43.9
Manes.09G176700 Manihot esculenta HOM05D004265 ORTHO05D005175 4.2e-39 165.6 200 56.0
SHI18053 Sapria himalayana HOM05D001712 ORTHO05D001731 5.5e-39 165.2 196 48.0
TPR.G2612 Trifolium pratense HOM05D004265 ORTHO05D005175 5.5e-39 165.2 205 42.4
Ca_10171_v3 Cicer arietinum L. HOM05D004265 ORTHO05D005175 1.2e-38 164.1 213 53.1
Dinv24444 Davidia involucrata HOM05D004265 ORTHO05D005175 1.6e-38 163.7 206 43.2
Potri.005G017400 Populus trichocarpa HOM05D004265 ORTHO05D005175 1.6e-38 163.7 205 42.0
DCAR_018300 Daucus carota HOM05D004265 ORTHO05D005175 2.7e-38 162.9 199 57.3
Lalb_Chr02g0147811 Lupinus albus HOM05D004265 ORTHO05D005175 2.7e-38 162.9 213 42.3
Medtr7g112110 Medicago truncatula HOM05D004265 ORTHO05D005175 4.7e-38 162.2 195 43.6
HPP92_026862 Vanilla planifolia HOM05D004265 ORTHO05D005175 6.1e-38 161.8 187 44.9
Duzib106G0903 Durio zibethinus HOM05D004265 ORTHO05D005175 1.0e-37 161.0 207 43.0
Gohir.A13G175800 Gossypium hirsutum HOM05D004265 ORTHO05D005175 5.2e-37 158.7 206 52.9
RcHm_v2.0_Chr3g0457041 Rosa chinensis HOM05D004265 ORTHO05D005175 5.2e-37 158.7 199 43.2
Lalb_Chr18g0046091 Lupinus albus HOM05D004265 ORTHO05D005175 8.8e-37 157.9 198 44.9
Hund21868 Selenicereus undatus HOM05D004265 ORTHO05D005175 1.1e-36 157.5 209 40.7
Glyma.03G231300 Glycine max HOM05D004265 ORTHO05D005175 1.5e-36 157.1 204 51.0
HanXRQChr10g0294471 Helianthus annuus HOM05D004265 ORTHO05D005175 1.5e-36 157.1 209 40.7
Rhsim05G0126500 Rhododendron simsii HOM05D004265 ORTHO05D005175 1.5e-36 157.1 185 44.3
Gohir.D13G181500 Gossypium hirsutum HOM05D004265 ORTHO05D005175 2.6e-36 156.4 206 53.9
Gorai.013G207000 Gossypium raimondii HOM05D004265 ORTHO05D005175 2.6e-36 156.4 206 53.9
Peaxi162Scf00750g00013 Petunia axillaris HOM05D001712 ORTHO05D001731 5.7e-36 155.2 188 42.0
Phvul.001G225100 Phaseolus vulgaris HOM05D004265 ORTHO05D005175 5.7e-36 155.2 199 43.2
Aqoxy2G02767 Aquilegia oxysepala HOM05D004265 ORTHO05D005175 9.7e-36 154.5 204 44.6
PSO210G0294 Papaver somniferum HOM05D004265 ORTHO05D005175 1.7e-35 153.7 206 41.7
AL1G66120 Arabidopsis lyrata HOM05D004265 ORTHO05D005175 2.2e-35 153.3 205 41.5
AT1G56423 Arabidopsis thaliana HOM05D004265 ORTHO05D005175 3.7e-35 152.5 196 43.4
Haze_04061 Corylus avellana HOM05D004265 ORTHO05D005175 8.2e-35 151.4 187 54.0
Ah.04g158690 Amaranthus hybridus HOM05D004265 ORTHO05D005175 1.8e-34 150.2 200 39.5
ATR0796G255 Amborella trichopoda HOM05D004265 ORTHO05D005175 1.8e-34 150.2 208 44.7
AUR62006753 Chenopodium quinoa HOM05D004265 ORTHO05D005175 1.8e-34 150.2 209 37.8
Cc02_g35030 Coffea canephora HOM05D004265 ORTHO05D005175 1.8e-34 150.2 198 40.9
Ciclev10002200m.g Citrus clementina HOM05D004265 ORTHO05D005175 3.1e-34 149.4 210 39.5
Peaxi162Scf00484g00005 Petunia axillaris HOM05D004265 ORTHO05D005175 7.0e-34 148.3 190 41.1
Hma1.2p1_0486F.1_g163300 Hydrangea macrophylla HOM05D004265 ORTHO05D005175 9.1e-34 147.9 155 44.5
SEGI_10604 Sequoiadendron giganteum HOM05D004265 ORTHO05D005175 9.1e-34 147.9 215 50.7
PSO761G0637 Papaver somniferum HOM05D004265 ORTHO05D005175 1.2e-33 147.5 206 40.3
THA.LOC104816889 Tarenaya hassleriana HOM05D004265 ORTHO05D005175 1.2e-33 147.5 199 52.8
Ca_09300_v3 Cicer arietinum L. HOM05D001672 ORTHO05D007349 1.6e-33 147.1 178 43.8
PGR031G2746 Punica granatum HOM05D004265 ORTHO05D005175 1.6e-33 147.1 211 40.3
Prupe.6G313200 Prunus persica HOM05D004265 ORTHO05D005175 2.0e-33 146.7 212 39.6
unitig_37.g12619 Utricularia gibba HOM05D004265 ORTHO05D005175 2.6e-33 146.4 182 41.8
Medtr7g112120 Medicago truncatula HOM05D004265 ORTHO05D005175 3.5e-33 146.0 195 40.0
Psat3g012800 Pisum sativum HOM05D004265 ORTHO05D005175 3.5e-33 146.0 200 38.5
Os03g0307000 Oryza sativa ssp. japonica HOM05D004265 ORTHO05D005175 4.5e-33 145.6 202 38.6
CSS0008259 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 1.7e-32 143.7 206 38.3
Nn3g16212 Nelumbo nucifera HOM05D004265 ORTHO05D005175 2.2e-32 143.3 206 40.3
EL10Ac4g09452 Beta vulgaris HOM05D004265 ORTHO05D005175 2.9e-32 142.9 207 38.2
Zm00001eb396130 Zea mays HOM05D004265 ORTHO05D005175 3.8e-32 142.5 193 39.9
CDE11G0488 Ceratophyllum demersum HOM05D004265 ORTHO05D005175 8.5e-32 141.4 208 38.0
AUR62000397 Chenopodium quinoa HOM05D004265 ORTHO05D005175 8.5e-32 141.4 207 37.7
Sed0011283 Sechium edule HOM05D004265 ORTHO05D005175 8.5e-32 141.4 218 35.8
Psat0s3400g0040 Pisum sativum HOM05D004265 ORTHO05D005175 1.1e-31 141.0 205 42.4
BcaC04g22056 Brassica carinata HOM05D004265 ORTHO05D005175 1.5e-31 140.6 206 45.6
BolC9t55323H Brassica oleracea HOM05D004265 ORTHO05D005175 1.5e-31 140.6 206 45.6
VMungo1383G0172 Vigna mungo HOM05D004265 ORTHO05D005175 1.5e-31 140.6 198 39.9
C09p24060 Brassica napus HOM05D004265 ORTHO05D005175 2.5e-31 139.8 206 45.6
Aa31LG2G11490 Aethionema arabicum HOM05D004265 ORTHO05D005175 4.2e-31 139.0 206 51.0
MD04G1193100 Malus domestica HOM05D004265 ORTHO05D005175 7.2e-31 138.3 202 37.1
SMO119G0102 Selaginella moellendorffii HOM05D004265 ORTHO05D005175 4.7e-30 135.6 183 38.8
SEGI_19544 Sequoiadendron giganteum HOM05D004265 ORTHO05D005175 4.7e-30 135.6 198 38.9
BcaB07g31123 Brassica carinata HOM05D004265 ORTHO05D005175 6.1e-30 135.2 212 44.3
Nitab4.5_0000368g0100 Nicotiana tabacum HOM05D004265 ORTHO05D005175 8.0e-30 134.8 203 40.4
Nitab4.5_0004873g0020 Nicotiana tabacum HOM05D004265 ORTHO05D005175 8.0e-30 134.8 203 40.4
SGA_v2.0_scaffold53G19289 Striga asiatica HOM05D004265 ORTHO05D005175 8.0e-30 134.8 199 38.7
BraA09t37526Z Brassica rapa HOM05D004265 ORTHO05D005175 1.0e-29 134.4 212 44.3
HPP92_003567 Vanilla planifolia HOM05D004265 ORTHO05D005175 4.0e-29 132.5 204 40.2
arahy.Tifrunner.gnm1.ann1.K90Y16 Arachis hypogaea HOM05D004265 ORTHO05D005175 6.7e-29 131.7 201 48.3
A09p19080 Brassica napus HOM05D004265 ORTHO05D005175 6.7e-29 131.7 212 44.8
arahy.Tifrunner.gnm1.ann1.7KQ9VF Arachis hypogaea HOM05D004265 ORTHO05D005175 8.8e-29 131.3 200 48.5
Thhalv10023634m.g Eutrema salsugineum HOM05D004265 ORTHO05D005175 8.8e-29 131.3 206 44.2
ClCG00G002440 Citrullus lanatus HOM05D004265 ORTHO05D005175 2.0e-28 130.2 202 49.5
ClCG02G014940 Citrullus lanatus HOM05D004265 ORTHO05D005175 2.0e-28 130.2 202 49.5
Lj5P334T30 Lonicera japonica HOM05D004265 ORTHO05D005175 2.6e-28 129.8 196 36.2
Gohir.A11G293141 Gossypium hirsutum HOM05D004265 ORTHO05D005175 3.3e-28 129.4 207 39.6
Gohir.D11G299703 Gossypium hirsutum HOM05D004265 ORTHO05D005175 3.3e-28 129.4 207 39.6
Gohir.D11G307566 Gossypium hirsutum HOM05D004265 ORTHO05D005175 3.3e-28 129.4 207 39.6
Gorai.007G338000 Gossypium raimondii HOM05D004265 ORTHO05D005175 3.3e-28 129.4 207 39.6
PGSC0003DMG400002801 Solanum tuberosum HOM05D004265 ORTHO05D005175 3.3e-28 129.4 203 38.9
MELO3C004187.2 Cucumis melo HOM05D004265 ORTHO05D005175 1.3e-27 127.5 202 47.5
Sopen01g043990 Solanum pennellii HOM05D004265 ORTHO05D005175 1.3e-27 127.5 203 38.4
HanXRQChr03g0072861 Helianthus annuus HOM05D004265 ORTHO05D005175 1.7e-27 127.1 190 36.8
COL.COLO4_05553 Corchorus olitorius HOM05D004265 ORTHO05D005175 2.8e-27 126.3 190 50.5
Solyc01g100480.3 Solanum lycopersicum HOM05D004265 ORTHO05D005175 3.7e-27 125.9 203 37.9
Zm00001eb014630 Zea mays HOM05D004265 ORTHO05D005175 6.3e-27 125.2 159 38.4
Peaxi162Scf00673g00321 Petunia axillaris HOM05D004265 ORTHO05D005175 8.2e-27 124.8 203 37.9
AagrBONN_evm.TU.Sc2ySwM_228.834 Anthoceros agrestis HOM05D004265 ORTHO05D005175 1.8e-26 123.6 184 37.5
FAN05G3791 Fragaria x ananassa HOM05D004265 ORTHO05D005175 2.4e-26 123.2 199 35.2
FAN09G1150 Fragaria x ananassa HOM05D004265 ORTHO05D005175 2.4e-26 123.2 199 35.2
Oeu013207.1 Olea europaea HOM05D004265 ORTHO05D005175 3.1e-26 122.9 164 40.2
DCAR_005425 Daucus carota HOM05D004265 ORTHO05D005175 7.0e-26 121.7 161 38.5
TAR362G0651 Trochodendron aralioides HOM05D004265 ORTHO05D005175 1.2e-25 120.9 148 45.3
FvH4_6g07440 Fragaria vesca HOM05D004265 ORTHO05D005175 2.7e-25 119.8 199 34.7
FAN14G5021 Fragaria x ananassa HOM05D004265 ORTHO05D005175 2.7e-25 119.8 199 34.7
FAN02G3541 Fragaria x ananassa HOM05D004265 ORTHO05D005175 4.5e-25 119.0 183 35.5
DCAR_029352 Daucus carota HOM05D004265 ORTHO05D005175 7.7e-25 118.2 181 33.7
DCAR_025282 Daucus carota HOM05D004265 ORTHO05D005175 1.5e-23 114.0 165 37.6
Lsat_1_v5_gn_9_122281 Lactuca sativa HOM05D004265 ORTHO05D005175 4.2e-23 112.5 184 34.8
Mapoly0127s0047 Marchantia polymorpha HOM05D004265 ORTHO05D005175 2.1e-22 110.2 190 33.7
Sed0005794 Sechium edule HOM05D004265 ORTHO05D005175 6.1e-22 108.6 207 39.6
CDE05G2260 Ceratophyllum demersum HOM05D004265 ORTHO05D005175 5.7e-20 102.1 121 47.1
Pp3c20_10160 Physcomitrium patens HOM05D004265 ORTHO05D005175 1.7e-19 100.5 193 31.1
Pp3c8_19980 Physcomitrium patens HOM05D004265 ORTHO05D005175 1.8e-18 97.1 205 29.8
TPR.G1662 Trifolium pratense HOM05D004265 ORTHO05D005175 3.1e-18 96.3 199 34.7
Oeu016567.1 Olea europaea HOM05D004265 ORTHO05D005175 7.0e-18 95.1 105 45.7
Lsat_1_v5_gn_3_11681 Lactuca sativa HOM05D004265 ORTHO05D005175 7.2e-15 85.1 124 36.3
CsaV3_2G007060 Cucumis sativus L. HOM05D004265 ORTHO05D005175 9.5e-15 84.7 157 38.9
Lsat_1_v5_gn_7_81020 Lactuca sativa HOM05D004265 ORTHO05D005175 2.3e-08 63.5 80 40.0
QL03p013641 Quercus lobata HOM05D004265 ORTHO05D005175 2.9e-08 63.2 76 40.8
CiPaw.14G122500 Carya illinoinensis HOM05D002542 ORTHO05D012505 1.5e-07 60.8 75 45.3
Lsat_1_v5_gn_9_123981 Lactuca sativa HOM05D001336 ORTHO05D001211 3.3e-07 59.7 61 49.2


User provided reference genes

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