Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G100.23 Capsicum annuum HOM05D004068 ORTHO05D004700 3.5e-82 308.1 147 100.0
CAN.G100.22 Capsicum annuum HOM05D004068 ORTHO05D004700 8.2e-71 270.4 140 91.4
Nitab4.5_0004218g0050 Nicotiana tabacum HOM05D004068 ORTHO05D004700 4.0e-70 268.1 140 89.3
Peaxi162Scf00919g00026 Petunia axillaris HOM05D004068 ORTHO05D004700 4.0e-70 268.1 141 88.7
Solyc01g068030.3 Solanum lycopersicum HOM05D004068 ORTHO05D004700 1.7e-68 262.7 140 87.1
Sopen01g029950 Solanum pennellii HOM05D004068 ORTHO05D004700 2.9e-68 261.9 140 87.1
Solyc01g068020.4 Solanum lycopersicum HOM05D004068 ORTHO05D004700 3.8e-68 261.5 139 87.8
Sopen01g029940 Solanum pennellii HOM05D004068 ORTHO05D004700 3.8e-68 261.5 139 87.8
PGSC0003DMG400005200 Solanum tuberosum HOM05D004068 ORTHO05D004700 3.8e-68 261.5 140 87.1
Nitab4.5_0000222g0260 Nicotiana tabacum HOM05D004068 ORTHO05D004700 1.4e-67 259.6 140 86.4
MSTRG.18070 Avicennia marina HOM05D004068 ORTHO05D004700 4.3e-64 248.1 140 80.0
PGR083G2849 Punica granatum HOM05D004068 ORTHO05D004700 9.7e-64 246.9 137 81.8
Actinidia21362 Actinidia chinensis HOM05D004068 ORTHO05D004700 1.3e-63 246.5 140 78.6
Actinidia06383 Actinidia chinensis HOM05D004068 ORTHO05D004700 1.6e-63 246.1 140 77.9
Prupe.3G006200 Prunus persica HOM05D004068 ORTHO05D004700 2.2e-63 245.7 140 77.9
COL.COLO4_23168 Corchorus olitorius HOM05D004068 ORTHO05D004700 6.3e-63 244.2 136 80.9
MD09G1287000 Malus domestica HOM05D004068 ORTHO05D004700 6.3e-63 244.2 140 77.1
Eucgr.H00894 Eucalyptus grandis HOM05D004068 ORTHO05D004700 8.2e-63 243.8 137 81.8
Duzib138G0863 Durio zibethinus HOM05D004068 ORTHO05D004700 1.4e-62 243.0 136 80.9
Manes.05G011200 Manihot esculenta HOM05D004068 ORTHO05D004700 1.4e-62 243.0 139 79.9
FAN23G3049 Fragaria x ananassa HOM05D004068 ORTHO05D004700 1.8e-62 242.7 139 78.4
RcHm_v2.0_Chr3g0486891 Rosa chinensis HOM05D004068 ORTHO05D004700 1.8e-62 242.7 139 77.7
Gorai.007G119900 Gossypium raimondii HOM05D004068 ORTHO05D004700 2.4e-62 242.3 136 80.9
PGR083G1259 Punica granatum HOM05D004068 ORTHO05D004700 2.4e-62 242.3 139 79.1
Glyma.10G009700 Glycine max HOM05D004068 ORTHO05D004700 3.1e-62 241.9 138 79.0
TWI14G0788 Tripterygium wilfordii HOM05D004068 ORTHO05D004700 3.1e-62 241.9 136 81.6
Glyma.02G009000 Glycine max HOM05D004068 ORTHO05D004700 4.1e-62 241.5 138 79.0
Lalb_Chr06g0167051 Lupinus albus HOM05D004068 ORTHO05D004700 5.3e-62 241.1 139 78.4
Gohir.D11G111800 Gossypium hirsutum HOM05D004068 ORTHO05D004700 6.9e-62 240.7 136 80.1
Ciclev10022090m.g Citrus clementina HOM05D004068 ORTHO05D004700 9.0e-62 240.4 136 80.1
Cfa004871 Carpinus fangiana HOM05D004068 ORTHO05D004700 2.0e-61 239.2 141 74.5
Rhsim13G0001400 Rhododendron simsii HOM05D004068 ORTHO05D004700 2.0e-61 239.2 141 74.5
CSS0008406 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 2.6e-61 238.8 140 75.0
CANSAT54G1466 Cannabis sativa HOM05D004068 ORTHO05D004700 3.4e-61 238.4 136 78.7
Medtr1g086340 Medicago truncatula HOM05D004068 ORTHO05D004700 4.5e-61 238.0 140 78.6
HanXRQChr16g0512461 Helianthus annuus HOM05D004068 ORTHO05D004700 5.9e-61 237.7 140 76.4
SalBow6G1478 Salvia bowleyana HOM05D004068 ORTHO05D004700 7.6e-61 237.3 139 77.7
Thecc.01G321500 Theobroma cacao HOM05D004068 ORTHO05D004700 1.7e-60 236.1 135 77.8
GSVIVG01028194001 Vitis vinifera HOM05D004068 ORTHO05D004700 2.9e-60 235.3 139 74.1
Migut.D00035 Erythranthe guttata HOM05D004068 ORTHO05D004700 3.8e-60 235.0 140 75.0
MELO3C023625.2 Cucumis melo HOM05D004068 ORTHO05D004700 5.0e-60 234.6 137 76.6
CsaV3_7G030310 Cucumis sativus L. HOM05D004068 ORTHO05D004700 6.5e-60 234.2 137 76.6
Lsat_1_v5_gn_8_167400 Lactuca sativa HOM05D004068 ORTHO05D004700 8.5e-60 233.8 137 76.6
Sed0027961 Sechium edule HOM05D004068 ORTHO05D004700 1.9e-59 232.6 137 76.6
SGA_v2.0_scaffold417G51268 Striga asiatica HOM05D004068 ORTHO05D004700 1.9e-59 232.6 149 73.8
FAN28G2449 Fragaria x ananassa HOM05D004068 ORTHO05D004700 3.2e-59 231.9 161 67.7
Cc01_g21940 Coffea canephora HOM05D004068 ORTHO05D004700 4.2e-59 231.5 137 76.6
Aqoxy2G02578 Aquilegia oxysepala HOM05D004068 ORTHO05D004700 5.5e-59 231.1 137 75.9
Nn3g21863 Nelumbo nucifera HOM05D004068 ORTHO05D004700 5.5e-59 231.1 137 74.5
Sed0019105 Sechium edule HOM05D004068 ORTHO05D004700 1.2e-58 229.9 137 75.9
unitig_90.g27445 Utricularia gibba HOM05D004068 ORTHO05D004700 1.2e-58 229.9 134 76.1
EL10As5g23587 Beta vulgaris HOM05D004068 ORTHO05D004700 2.1e-58 229.2 139 73.4
PSO170G5617 Papaver somniferum HOM05D004068 ORTHO05D004700 2.1e-58 229.2 138 72.5
PSO357G0073 Papaver somniferum HOM05D004068 ORTHO05D004700 2.1e-58 229.2 138 72.5
CiPaw.07G122600 Carya illinoinensis HOM05D004068 ORTHO05D004700 2.7e-58 228.8 140 71.4
ECA236G4612 Erigeron canadensis HOM05D004068 ORTHO05D004700 3.6e-58 228.4 139 72.7
CARHR001800 Cardamine hirsuta HOM05D004068 ORTHO05D004700 4.6e-58 228.0 136 75.0
Potri.014G115400 Populus trichocarpa HOM05D004068 ORTHO05D004700 4.6e-58 228.0 140 73.6
A10p01270 Brassica napus HOM05D004068 ORTHO05D004700 6.1e-58 227.6 136 74.3
C05p01270 Brassica napus HOM05D004068 ORTHO05D004700 6.1e-58 227.6 136 74.3
Gohir.A07G130200 Gossypium hirsutum HOM05D004068 ORTHO05D004700 1.0e-57 226.9 139 71.9
Carub.0001s0155 Capsella rubella HOM05D004068 ORTHO05D004700 1.4e-57 226.5 136 75.0
Potri.002G190300 Populus trichocarpa HOM05D004068 ORTHO05D004700 1.4e-57 226.5 140 73.6
Sp1g01550 Schrenkiella parvula HOM05D004068 ORTHO05D004700 1.8e-57 226.1 136 75.0
AL1G11820 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 2.3e-57 225.7 136 74.3
AT1G02475 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 2.3e-57 225.7 136 74.3
Gorai.001G146300 Gossypium raimondii HOM05D004068 ORTHO05D004700 2.3e-57 225.7 139 71.2
THA.LOC104801318 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 3.0e-57 225.3 142 73.9
Thhalv10008722m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 3.9e-57 224.9 135 74.8
Gohir.D07G134600 Gossypium hirsutum HOM05D004068 ORTHO05D004700 6.7e-57 224.2 139 70.5
HPP92_010032 Vanilla planifolia HOM05D004068 ORTHO05D004700 1.1e-56 223.4 141 69.5
FAN26G1054 Fragaria x ananassa HOM05D004068 ORTHO05D004700 9.7e-56 220.3 192 56.8
Zm00001eb131060 Zea mays HOM05D004068 ORTHO05D004700 1.3e-55 219.9 141 70.2
TAR633G0425 Trochodendron aralioides HOM05D004068 ORTHO05D004700 1.7e-55 219.5 143 69.2
AUR62024574 Chenopodium quinoa HOM05D004068 ORTHO05D004700 3.7e-55 218.4 142 71.1
HanXRQChr06g0168031 Helianthus annuus HOM05D004068 ORTHO05D004700 9.1e-54 213.8 140 66.4
Hund09678 Selenicereus undatus HOM05D004068 ORTHO05D004700 9.1e-54 213.8 129 73.6
Aa31LG1G10110 Aethionema arabicum HOM05D004068 ORTHO05D004700 3.4e-53 211.8 135 68.1
BcaC07g42396 Brassica carinata HOM05D004068 ORTHO05D004700 4.5e-53 211.5 138 71.0
BcaB03g15774 Brassica carinata HOM05D004068 ORTHO05D004700 2.2e-52 209.1 135 68.9
FAN19G0978 Fragaria x ananassa HOM05D004068 ORTHO05D004700 2.9e-52 208.8 193 55.4
Atru.chr5.916 Acer truncatum HOM05D004068 ORTHO05D004700 1.1e-51 206.8 138 71.0
Hma1.2p1_0484F.1_g162840 Hydrangea macrophylla HOM05D004068 ORTHO05D004700 1.1e-51 206.8 118 77.1
BraA10t42405Z Brassica rapa HOM05D004068 ORTHO05D004700 1.9e-51 206.1 137 69.3
Haze_05111 Corylus avellana HOM05D004068 ORTHO05D004700 1.6e-50 203.0 113 78.8
FvH4_1g26710 Fragaria vesca HOM05D004068 ORTHO05D004700 2.1e-50 202.6 112 79.5
AT4G01883 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 3.6e-50 201.8 136 65.4
Carub.0006s3535 Capsella rubella HOM05D004068 ORTHO05D004700 3.6e-50 201.8 136 66.2
Thhalv10028926m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 4.7e-50 201.4 136 66.9
Thhalv10028927m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 4.7e-50 201.4 136 66.9
QL12p034273 Quercus lobata HOM05D004068 ORTHO05D004700 6.1e-50 201.1 113 77.0
TAR636G1362 Trochodendron aralioides HOM05D004068 ORTHO05D004700 1.0e-49 200.3 113 77.0
BcaB01g02105 Brassica carinata HOM05D004068 ORTHO05D004700 2.3e-49 199.1 135 65.9
Sp6g01730 Schrenkiella parvula HOM05D004068 ORTHO05D004700 5.1e-49 198.0 135 65.9
THA.LOC104801319 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 1.1e-48 196.8 134 66.4
SEGI_19128 Sequoiadendron giganteum HOM05D004068 ORTHO05D004700 2.6e-48 195.7 138 63.0
MBI19_g32706_MAGBIO Magnolia biondii HOM05D004068 ORTHO05D004700 3.3e-48 195.3 157 62.4
AL6G51410 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 7.4e-48 194.1 139 63.3
Lj1A11T70 Lonicera japonica HOM05D004068 ORTHO05D004700 7.4e-48 194.1 110 80.0
BcaC04g24068 Brassica carinata HOM05D004068 ORTHO05D004700 4.8e-47 191.4 135 65.2
BolC5t28909H Brassica oleracea HOM05D004068 ORTHO05D004700 1.1e-46 190.3 125 68.8
Cpa.g.sc67.88 Carica papaya HOM05D004068 ORTHO05D004700 7.0e-46 187.6 97 83.5
CDE02G2955 Ceratophyllum demersum HOM05D000037 ORTHO05D001684 2.0e-45 186.0 160 60.6
AUR62011741 Chenopodium quinoa HOM05D004068 ORTHO05D004700 2.0e-45 186.0 186 51.1
Mapoly0066s0015 Marchantia polymorpha HOM05D004068 ORTHO05D004700 4.5e-45 184.9 140 57.9
Duzib211G0484 Durio zibethinus HOM05D004068 ORTHO05D004700 7.7e-45 184.1 97 80.4
C09p01400 Brassica napus HOM05D004068 ORTHO05D004700 1.0e-44 183.7 137 62.8
CiPaw.08G084800 Carya illinoinensis HOM05D004068 ORTHO05D004700 1.7e-44 183.0 97 79.4
Carub.0001s0154 Capsella rubella HOM05D004068 ORTHO05D004700 2.2e-44 182.6 136 57.4
Sp1g01540 Schrenkiella parvula HOM05D004068 ORTHO05D004700 2.2e-44 182.6 136 58.1
HPP92_015252 Vanilla planifolia HOM05D004068 ORTHO05D004700 3.8e-44 181.8 112 71.4
AL1G11810 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 5.0e-44 181.4 136 57.4
BolC9t53073H Brassica oleracea HOM05D004068 ORTHO05D004700 5.0e-44 181.4 143 60.1
AT1G02470 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 6.5e-44 181.0 136 56.6
Sabra14G0085500 Salix brachista HOM05D004068 ORTHO05D004700 8.5e-44 180.6 170 52.9
BcaC07g42395 Brassica carinata HOM05D004068 ORTHO05D004700 1.1e-43 180.3 136 57.4
BolC8t52840H Brassica oleracea HOM05D004068 ORTHO05D004700 1.1e-43 180.3 136 57.4
CARHR001790 Cardamine hirsuta HOM05D004068 ORTHO05D004700 1.4e-43 179.9 136 57.4
Thhalv10008621m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 1.9e-43 179.5 136 56.6
Pp3c26_7940 Physcomitrium patens HOM05D004068 ORTHO05D004700 1.9e-43 179.5 139 56.1
ATR0693G403 Amborella trichopoda HOM05D004068 ORTHO05D004700 3.2e-43 178.7 113 66.4
Sc17g0000200 Simmondsia chinensis HOM05D004068 ORTHO05D004700 4.2e-43 178.3 98 76.5
AagrBONN_evm.TU.Sc2ySwM_228.3301 Anthoceros agrestis HOM05D004068 ORTHO05D004700 9.4e-43 177.2 136 57.4
A09p68650 Brassica napus HOM05D004068 ORTHO05D004700 1.6e-42 176.4 136 55.9
BraA09t42208Z Brassica rapa HOM05D004068 ORTHO05D004700 1.6e-42 176.4 136 55.9
A10p01260 Brassica napus HOM05D004068 ORTHO05D004700 1.1e-40 170.2 136 53.7
BraA10t42404Z Brassica rapa HOM05D004068 ORTHO05D004700 1.1e-40 170.2 136 53.7
C05p01260 Brassica napus HOM05D004068 ORTHO05D004700 1.5e-40 169.9 136 53.7
THA.LOC104801317 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 1.5e-40 169.9 136 54.4
Aa31LG1G10100 Aethionema arabicum HOM05D004068 ORTHO05D004700 4.4e-40 168.3 136 54.4
SMO134G0067 Selaginella moellendorffii HOM05D004068 ORTHO05D004700 8.2e-39 164.1 135 54.8
VMungo0720G2238 Vigna mungo HOM05D004068 ORTHO05D004700 9.1e-38 160.6 138 58.7
Sabra02G0165200 Salix brachista HOM05D004068 ORTHO05D004700 1.0e-36 157.1 148 54.1
ClCG09G004770 Citrullus lanatus HOM05D004068 ORTHO05D004700 2.2e-36 156.0 137 57.7
Pp3c9_13510 Physcomitrium patens HOM05D004068 ORTHO05D004700 2.9e-36 155.6 136 45.6
Gohir.A11G106800 Gossypium hirsutum HOM05D004068 ORTHO05D004700 6.5e-36 154.5 80 82.5
C08p53250 Brassica napus HOM05D004068 ORTHO05D004700 8.5e-36 154.1 112 58.0
MD17G1279300 Malus domestica HOM05D004068 ORTHO05D004700 2.5e-35 152.5 87 75.9
CSS0047755 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 1.0e-33 147.1 81 77.8
CBR_g29411 Chara braunii HOM05D004068 ORTHO05D004700 1.4e-33 146.7 112 56.2
DCAR_018255 Daucus carota HOM05D004068 ORTHO05D004700 5.2e-33 144.8 81 76.5
CSS0031477 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 6.7e-33 144.4 81 77.8
Cre14.g616250 Chlamydomonas reinhardtii HOM05D004068 ORTHO05D004700 2.0e-29 132.9 137 45.3
CARHR249850 Cardamine hirsuta HOM05D004068 ORTHO05D004700 4.5e-29 131.7 80 70.0
MCO03G258 Micromonas commoda HOM05D004068 ORTHO05D004700 1.5e-27 126.7 137 42.3
Ah.02g112620 Amaranthus hybridus HOM05D004068 ORTHO05D004700 1.9e-27 126.3 145 50.3
Dinv12104 Davidia involucrata HOM05D004068 ORTHO05D004700 1.6e-26 123.2 63 82.5
arahy.Tifrunner.gnm1.ann1.20WW32 Arachis hypogaea HOM05D004068 ORTHO05D004700 1.0e-25 120.6 139 48.2
Lj5g0018153 Lotus japonicus HOM05D004068 ORTHO05D004700 1.0e-25 120.6 72 75.0
Psat6g159440 Pisum sativum HOM05D004068 ORTHO05D004700 3.4e-24 115.5 62 82.3
Phvul.007G211200 Phaseolus vulgaris HOM05D004068 ORTHO05D004700 5.7e-24 114.8 88 61.4
arahy.Tifrunner.gnm1.ann1.G5UTBZ Arachis hypogaea HOM05D004068 ORTHO05D004700 4.8e-23 111.7 133 47.4
PRCOL_00002997 Prasinoderma coloniale HOM05D004068 ORTHO05D004700 4.8e-23 111.7 140 38.6
TPR.G3089 Trifolium pratense HOM05D004068 ORTHO05D004700 8.3e-23 110.9 62 79.0
Ca_10252_v3 Cicer arietinum L. HOM05D004068 ORTHO05D004700 1.1e-22 110.5 80 61.2
vmacro09333 Vaccinium macrocarpon HOM05D004068 ORTHO05D004700 1.8e-22 109.8 63 74.6
CAN.G257.121 Capsicum annuum HOM05D004068 ORTHO05D004700 5.9e-21 104.8 53 92.5
BraA09t35801Z Brassica rapa HOM05D004068 ORTHO05D004700 1.2e-18 97.1 75 58.7
TPR.G3034 Trifolium pratense HOM05D004068 ORTHO05D004700 2.8e-18 95.9 56 80.4
Aa31LG5G1470 Aethionema arabicum HOM05D004068 ORTHO05D004700 6.1e-18 94.7 136 39.7
Glyma.19G225300 Glycine max HOM05D004068 ORTHO05D004700 1.6e-13 80.1 85 48.2
Oeu052569.2 Olea europaea HOM05D004068 ORTHO05D004700 2.2e-07 59.7 31 80.6
CSS0034791 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 1.9e-06 56.6 58 56.9
CSS0043421 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 1.9e-06 56.6 58 56.9
Os01g0328600 Oryza sativa ssp. japonica HOM05D004068 ORTHO05D004700 3.2e-06 55.8 32 71.9


User provided reference genes

Program Settings