Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G100.22 Capsicum annuum HOM05D004068 ORTHO05D004700 4.0e-131 471.5 242 100.0
Solyc01g068030.3 Solanum lycopersicum HOM05D004068 ORTHO05D004700 3.7e-105 385.2 237 84.4
Solyc01g068020.4 Solanum lycopersicum HOM05D004068 ORTHO05D004700 1.1e-104 383.6 246 81.7
PGSC0003DMG400005200 Solanum tuberosum HOM05D004068 ORTHO05D004700 1.1e-104 383.6 237 84.4
Nitab4.5_0004218g0050 Nicotiana tabacum HOM05D004068 ORTHO05D004700 1.4e-104 383.3 251 80.1
Sopen01g029950 Solanum pennellii HOM05D004068 ORTHO05D004700 1.0e-102 377.1 237 83.1
Sopen01g029940 Solanum pennellii HOM05D004068 ORTHO05D004700 1.3e-102 376.7 230 83.0
Peaxi162Scf00919g00026 Petunia axillaris HOM05D004068 ORTHO05D004700 2.0e-98 362.8 227 84.1
Nitab4.5_0000222g0260 Nicotiana tabacum HOM05D004068 ORTHO05D004700 1.9e-96 356.3 238 77.3
MSTRG.18070 Avicennia marina HOM05D004068 ORTHO05D004700 4.3e-77 292.0 156 86.5
Eucgr.H00894 Eucalyptus grandis HOM05D004068 ORTHO05D004700 2.8e-76 289.3 226 69.0
Actinidia06383 Actinidia chinensis HOM05D004068 ORTHO05D004700 4.8e-76 288.5 182 74.7
Actinidia21362 Actinidia chinensis HOM05D004068 ORTHO05D004700 6.2e-76 288.1 156 84.0
PGR083G2849 Punica granatum HOM05D004068 ORTHO05D004700 2.4e-75 286.2 237 64.6
Duzib138G0863 Durio zibethinus HOM05D004068 ORTHO05D004700 4.0e-75 285.4 151 86.1
COL.COLO4_23168 Corchorus olitorius HOM05D004068 ORTHO05D004700 5.3e-75 285.0 151 86.1
Glyma.02G009000 Glycine max HOM05D004068 ORTHO05D004700 5.3e-75 285.0 215 66.5
Prupe.3G006200 Prunus persica HOM05D004068 ORTHO05D004700 1.5e-74 283.5 179 74.3
Cfa004871 Carpinus fangiana HOM05D004068 ORTHO05D004700 2.0e-74 283.1 155 81.9
CANSAT54G1466 Cannabis sativa HOM05D004068 ORTHO05D004700 4.5e-74 282.0 152 85.5
RcHm_v2.0_Chr3g0486891 Rosa chinensis HOM05D004068 ORTHO05D004700 4.5e-74 282.0 156 81.4
Medtr1g086340 Medicago truncatula HOM05D004068 ORTHO05D004700 7.6e-74 281.2 223 65.0
Gorai.007G119900 Gossypium raimondii HOM05D004068 ORTHO05D004700 1.3e-73 280.4 218 67.9
Lalb_Chr06g0167051 Lupinus albus HOM05D004068 ORTHO05D004700 1.3e-73 280.4 203 69.0
Manes.05G011200 Manihot esculenta HOM05D004068 ORTHO05D004700 1.7e-73 280.0 191 73.3
CSS0008406 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 3.8e-73 278.9 155 80.0
Migut.D00035 Erythranthe guttata HOM05D004068 ORTHO05D004700 4.9e-73 278.5 156 80.8
PGR083G1259 Punica granatum HOM05D004068 ORTHO05D004700 4.9e-73 278.5 154 82.5
MD09G1287000 Malus domestica HOM05D004068 ORTHO05D004700 6.4e-73 278.1 179 75.4
Sed0027961 Sechium edule HOM05D004068 ORTHO05D004700 6.4e-73 278.1 217 65.0
Thecc.01G321500 Theobroma cacao HOM05D004068 ORTHO05D004700 1.1e-72 277.3 151 83.4
HanXRQChr16g0512461 Helianthus annuus HOM05D004068 ORTHO05D004700 1.9e-72 276.6 222 64.0
Ciclev10022090m.g Citrus clementina HOM05D004068 ORTHO05D004700 4.2e-72 275.4 229 66.4
GSVIVG01028194001 Vitis vinifera HOM05D004068 ORTHO05D004700 4.2e-72 275.4 176 71.6
FAN23G3049 Fragaria x ananassa HOM05D004068 ORTHO05D004700 5.4e-72 275.0 154 80.5
SalBow6G1478 Salvia bowleyana HOM05D004068 ORTHO05D004700 7.1e-72 274.6 219 63.9
Glyma.10G009700 Glycine max HOM05D004068 ORTHO05D004700 1.2e-71 273.9 233 63.1
TWI14G0788 Tripterygium wilfordii HOM05D004068 ORTHO05D004700 1.2e-71 273.9 225 65.8
Nn3g21863 Nelumbo nucifera HOM05D004068 ORTHO05D004700 1.6e-71 273.5 153 79.7
Gohir.D11G111800 Gossypium hirsutum HOM05D004068 ORTHO05D004700 2.1e-71 273.1 145 85.5
unitig_90.g27445 Utricularia gibba HOM05D004068 ORTHO05D004700 2.1e-71 273.1 178 71.3
MELO3C023625.2 Cucumis melo HOM05D004068 ORTHO05D004700 3.5e-71 272.3 227 63.4
SGA_v2.0_scaffold417G51268 Striga asiatica HOM05D004068 ORTHO05D004700 3.5e-71 272.3 171 77.8
Cc01_g21940 Coffea canephora HOM05D004068 ORTHO05D004700 6.0e-71 271.6 156 80.1
Rhsim13G0001400 Rhododendron simsii HOM05D004068 ORTHO05D004700 6.0e-71 271.6 235 61.3
CiPaw.07G122600 Carya illinoinensis HOM05D004068 ORTHO05D004700 7.9e-71 271.2 159 76.1
CsaV3_7G030310 Cucumis sativus L. HOM05D004068 ORTHO05D004700 1.0e-70 270.8 220 64.1
CAN.G100.23 Capsicum annuum HOM05D004068 ORTHO05D004700 1.8e-70 270.0 140 91.4
PSO170G5617 Papaver somniferum HOM05D004068 ORTHO05D004700 6.7e-70 268.1 156 78.2
FAN28G2449 Fragaria x ananassa HOM05D004068 ORTHO05D004700 4.3e-69 265.4 178 70.2
PSO357G0073 Papaver somniferum HOM05D004068 ORTHO05D004700 4.3e-69 265.4 189 66.7
Gorai.001G146300 Gossypium raimondii HOM05D004068 ORTHO05D004700 9.6e-69 264.2 154 74.7
Gohir.A07G130200 Gossypium hirsutum HOM05D004068 ORTHO05D004700 2.1e-68 263.1 206 62.6
Gohir.D07G134600 Gossypium hirsutum HOM05D004068 ORTHO05D004700 2.8e-68 262.7 154 74.0
C05p01270 Brassica napus HOM05D004068 ORTHO05D004700 1.1e-67 260.8 178 69.7
CARHR001800 Cardamine hirsuta HOM05D004068 ORTHO05D004700 1.1e-67 260.8 175 70.9
A10p01270 Brassica napus HOM05D004068 ORTHO05D004700 1.4e-67 260.4 149 79.2
Thhalv10008722m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 1.4e-67 260.4 186 68.8
Sed0019105 Sechium edule HOM05D004068 ORTHO05D004700 1.4e-67 260.4 218 61.5
HPP92_010032 Vanilla planifolia HOM05D004068 ORTHO05D004700 1.4e-67 260.4 158 73.4
Potri.002G190300 Populus trichocarpa HOM05D004068 ORTHO05D004700 2.4e-67 259.6 224 60.7
Sp1g01550 Schrenkiella parvula HOM05D004068 ORTHO05D004700 5.3e-67 258.5 164 73.8
THA.LOC104801318 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 5.3e-67 258.5 178 70.2
Potri.014G115400 Populus trichocarpa HOM05D004068 ORTHO05D004700 9.0e-67 257.7 238 56.7
ECA236G4612 Erigeron canadensis HOM05D004068 ORTHO05D004700 1.2e-66 257.3 235 59.1
EL10As5g23587 Beta vulgaris HOM05D004068 ORTHO05D004700 1.5e-66 256.9 262 56.1
AT1G02475 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 4.5e-66 255.4 194 65.5
Carub.0001s0155 Capsella rubella HOM05D004068 ORTHO05D004700 4.5e-66 255.4 210 63.3
AL1G11820 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 5.8e-66 255.0 219 63.0
TAR633G0425 Trochodendron aralioides HOM05D004068 ORTHO05D004700 7.6e-66 254.6 155 74.8
FAN26G1054 Fragaria x ananassa HOM05D004068 ORTHO05D004700 1.3e-65 253.8 209 59.8
Lsat_1_v5_gn_8_167400 Lactuca sativa HOM05D004068 ORTHO05D004700 3.2e-64 249.2 143 80.4
Zm00001eb131060 Zea mays HOM05D004068 ORTHO05D004700 2.7e-63 246.1 200 60.0
Aqoxy2G02578 Aquilegia oxysepala HOM05D004068 ORTHO05D004700 4.6e-63 245.4 142 79.6
Aa31LG1G10110 Aethionema arabicum HOM05D004068 ORTHO05D004700 6.0e-63 245.0 185 63.2
Hma1.2p1_0484F.1_g162840 Hydrangea macrophylla HOM05D004068 ORTHO05D004700 2.3e-62 243.0 164 73.2
Atru.chr5.916 Acer truncatum HOM05D004068 ORTHO05D004700 3.9e-62 242.3 227 59.9
BcaB03g15774 Brassica carinata HOM05D004068 ORTHO05D004700 3.9e-62 242.3 148 74.3
HanXRQChr06g0168031 Helianthus annuus HOM05D004068 ORTHO05D004700 3.9e-62 242.3 235 52.8
QL12p034273 Quercus lobata HOM05D004068 ORTHO05D004700 4.3e-61 238.8 205 61.5
AUR62024574 Chenopodium quinoa HOM05D004068 ORTHO05D004700 9.6e-61 237.7 234 55.6
Haze_05111 Corylus avellana HOM05D004068 ORTHO05D004700 9.6e-61 237.7 128 82.8
MBI19_g32706_MAGBIO Magnolia biondii HOM05D004068 ORTHO05D004700 2.8e-60 236.1 176 67.0
FAN19G0978 Fragaria x ananassa HOM05D004068 ORTHO05D004700 3.7e-60 235.7 275 50.5
BraA10t42405Z Brassica rapa HOM05D004068 ORTHO05D004700 1.1e-59 234.2 226 56.2
Lj1A11T70 Lonicera japonica HOM05D004068 ORTHO05D004700 1.8e-59 233.4 221 56.6
TAR636G1362 Trochodendron aralioides HOM05D004068 ORTHO05D004700 4.1e-59 232.3 202 62.4
FvH4_1g26710 Fragaria vesca HOM05D004068 ORTHO05D004700 6.9e-59 231.5 202 60.9
CDE02G2955 Ceratophyllum demersum HOM05D000037 ORTHO05D001684 9.0e-59 231.1 181 65.2
Carub.0006s3535 Capsella rubella HOM05D004068 ORTHO05D004700 2.0e-58 229.9 185 61.1
Hund09678 Selenicereus undatus HOM05D004068 ORTHO05D004700 7.6e-58 228.0 131 79.4
AT4G01883 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 1.3e-57 227.3 168 62.5
Thhalv10028926m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 3.8e-57 225.7 183 60.1
Thhalv10028927m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 3.8e-57 225.7 183 60.1
THA.LOC104801319 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 5.0e-57 225.3 225 52.4
BcaB01g02105 Brassica carinata HOM05D004068 ORTHO05D004700 3.2e-56 222.6 191 57.6
AUR62011741 Chenopodium quinoa HOM05D004068 ORTHO05D004700 5.5e-56 221.9 202 56.4
Sp6g01730 Schrenkiella parvula HOM05D004068 ORTHO05D004700 7.2e-56 221.5 183 59.0
Duzib211G0484 Durio zibethinus HOM05D004068 ORTHO05D004700 1.6e-55 220.3 113 85.0
SEGI_19128 Sequoiadendron giganteum HOM05D004068 ORTHO05D004700 1.6e-55 220.3 151 64.2
CiPaw.08G084800 Carya illinoinensis HOM05D004068 ORTHO05D004700 2.1e-55 219.9 150 72.0
AL6G51410 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 2.7e-55 219.5 154 64.9
Sabra14G0085500 Salix brachista HOM05D004068 ORTHO05D004700 6.1e-55 218.4 256 49.2
BolC5t28909H Brassica oleracea HOM05D004068 ORTHO05D004700 2.3e-54 216.5 213 54.9
BcaC04g24068 Brassica carinata HOM05D004068 ORTHO05D004700 6.7e-54 214.9 151 65.6
Cpa.g.sc67.88 Carica papaya HOM05D004068 ORTHO05D004700 1.5e-53 213.8 186 61.3
AL1G11810 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 2.5e-53 213.0 151 61.6
AT1G02470 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 2.5e-53 213.0 151 60.9
Sc17g0000200 Simmondsia chinensis HOM05D004068 ORTHO05D004700 2.5e-53 213.0 171 62.0
BcaC07g42396 Brassica carinata HOM05D004068 ORTHO05D004700 3.3e-53 212.6 138 71.7
C09p01400 Brassica napus HOM05D004068 ORTHO05D004700 1.4e-51 207.2 153 63.4
Carub.0001s0154 Capsella rubella HOM05D004068 ORTHO05D004700 3.1e-51 206.1 229 47.2
CAN.G257.121 Capsicum annuum HOM05D004068 ORTHO05D004700 5.3e-51 205.3 158 75.3
BolC9t53073H Brassica oleracea HOM05D004068 ORTHO05D004700 6.9e-51 204.9 159 61.0
Mapoly0066s0015 Marchantia polymorpha HOM05D004068 ORTHO05D004700 9.0e-51 204.5 148 59.5
CARHR001790 Cardamine hirsuta HOM05D004068 ORTHO05D004700 1.5e-50 203.8 182 54.4
Sp1g01540 Schrenkiella parvula HOM05D004068 ORTHO05D004700 7.7e-50 201.4 145 59.3
ATR0693G403 Amborella trichopoda HOM05D004068 ORTHO05D004700 1.0e-49 201.1 126 70.6
Thhalv10008621m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 2.2e-49 199.9 145 58.6
THA.LOC104801317 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 2.2e-49 199.9 195 52.8
BcaC07g42395 Brassica carinata HOM05D004068 ORTHO05D004700 2.5e-48 196.4 145 57.9
BolC8t52840H Brassica oleracea HOM05D004068 ORTHO05D004700 2.5e-48 196.4 145 57.9
HPP92_015252 Vanilla planifolia HOM05D004068 ORTHO05D004700 4.2e-48 195.7 114 76.3
Pp3c26_7940 Physcomitrium patens HOM05D004068 ORTHO05D004700 5.5e-48 195.3 154 56.5
AagrBONN_evm.TU.Sc2ySwM_228.3301 Anthoceros agrestis HOM05D004068 ORTHO05D004700 7.2e-48 194.9 143 58.0
VMungo0720G2238 Vigna mungo HOM05D004068 ORTHO05D004700 6.1e-47 191.8 186 55.4
A10p01260 Brassica napus HOM05D004068 ORTHO05D004700 1.4e-46 190.7 145 55.9
BraA10t42404Z Brassica rapa HOM05D004068 ORTHO05D004700 1.4e-46 190.7 145 55.9
Aa31LG1G10100 Aethionema arabicum HOM05D004068 ORTHO05D004700 1.8e-46 190.3 198 47.5
C05p01260 Brassica napus HOM05D004068 ORTHO05D004700 1.8e-46 190.3 145 55.9
Gohir.A11G106800 Gossypium hirsutum HOM05D004068 ORTHO05D004700 2.5e-45 186.4 162 62.3
ClCG09G004770 Citrullus lanatus HOM05D004068 ORTHO05D004700 1.3e-44 184.1 230 49.1
A09p68650 Brassica napus HOM05D004068 ORTHO05D004700 6.3e-44 181.8 253 40.7
BraA09t42208Z Brassica rapa HOM05D004068 ORTHO05D004700 6.3e-44 181.8 253 40.7
MD17G1279300 Malus domestica HOM05D004068 ORTHO05D004700 3.1e-43 179.5 124 72.6
SMO134G0067 Selaginella moellendorffii HOM05D004068 ORTHO05D004700 1.2e-42 177.6 136 58.1
DCAR_018255 Daucus carota HOM05D004068 ORTHO05D004700 7.7e-42 174.9 162 58.0
CSS0047755 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 3.2e-40 169.5 91 81.3
Pp3c9_13510 Physcomitrium patens HOM05D004068 ORTHO05D004700 9.4e-40 167.9 143 46.9
CSS0031477 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 2.1e-39 166.8 91 81.3
Sabra02G0165200 Salix brachista HOM05D004068 ORTHO05D004700 1.4e-38 164.1 246 42.7
C08p53250 Brassica napus HOM05D004068 ORTHO05D004700 2.8e-36 156.4 229 39.7
CARHR249850 Cardamine hirsuta HOM05D004068 ORTHO05D004700 6.3e-36 155.2 124 61.3
CBR_g29411 Chara braunii HOM05D004068 ORTHO05D004700 1.1e-35 154.5 119 55.5
arahy.Tifrunner.gnm1.ann1.20WW32 Arachis hypogaea HOM05D004068 ORTHO05D004700 7.0e-35 151.8 150 54.0
Psat6g159440 Pisum sativum HOM05D004068 ORTHO05D004700 1.0e-33 147.9 103 68.9
Lj5g0018153 Lotus japonicus HOM05D004068 ORTHO05D004700 1.7e-33 147.1 126 60.3
Phvul.007G211200 Phaseolus vulgaris HOM05D004068 ORTHO05D004700 2.9e-33 146.4 100 70.0
Cre14.g616250 Chlamydomonas reinhardtii HOM05D004068 ORTHO05D004700 1.9e-32 143.7 145 46.2
arahy.Tifrunner.gnm1.ann1.G5UTBZ Arachis hypogaea HOM05D004068 ORTHO05D004700 4.2e-32 142.5 167 49.7
Ah.02g112620 Amaranthus hybridus HOM05D004068 ORTHO05D004700 5.2e-30 135.6 142 53.5
Ca_10252_v3 Cicer arietinum L. HOM05D004068 ORTHO05D004700 8.8e-30 134.8 166 47.6
MCO03G258 Micromonas commoda HOM05D004068 ORTHO05D004700 1.1e-29 134.4 146 41.1
Dinv12104 Davidia involucrata HOM05D004068 ORTHO05D004700 1.4e-27 127.5 64 87.5
PRCOL_00002997 Prasinoderma coloniale HOM05D004068 ORTHO05D004700 3.5e-26 122.9 166 38.0
vmacro09333 Vaccinium macrocarpon HOM05D004068 ORTHO05D004700 3.5e-26 122.9 65 84.6
TPR.G3089 Trifolium pratense HOM05D004068 ORTHO05D004700 6.5e-25 118.6 160 48.1
BraA09t35801Z Brassica rapa HOM05D004068 ORTHO05D004700 3.2e-24 116.3 156 41.0
Aa31LG5G1470 Aethionema arabicum HOM05D004068 ORTHO05D004700 1.2e-23 114.4 219 37.4
TPR.G3034 Trifolium pratense HOM05D004068 ORTHO05D004700 3.7e-20 102.8 56 85.7
Oeu052569.2 Olea europaea HOM05D004068 ORTHO05D004700 4.5e-18 95.9 111 53.2
Oeu044746.1 Olea europaea HOM05D004068 ORTHO05D004700 1.2e-15 87.8 105 52.4
Glyma.19G225300 Glycine max HOM05D004068 ORTHO05D004700 8.0e-15 85.1 85 52.9
Os01g0328600 Oryza sativa ssp. japonica HOM05D004068 ORTHO05D004700 1.4e-11 74.3 63 58.7
BcaC03g18203 Brassica carinata HOM05D004068 ORTHO05D004700 8.6e-09 65.1 50 56.0
C02p62690 Brassica napus HOM05D004068 ORTHO05D004700 3.3e-08 63.2 48 56.2
CSS0034791 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 1.6e-07 60.8 65 53.8
CSS0043421 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 1.6e-07 60.8 65 53.8
A02p42700 Brassica napus HOM05D004068 ORTHO05D004700 2.3e-06 57.0 121 36.4
A09p01340 Brassica napus HOM05D004068 ORTHO05D004700 5.2e-06 55.8 122 36.9


User provided reference genes

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